XLOC_030746


Basic Information

Item Value
gene id XLOC_030746
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 1997764 ~ 1999493 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061913
TCAAGTGTCATGCAACGTTAACTGTTTTATTGTGATCATTCCTCGTCATTTTTACATTGGTGctgtatttaaagggatagttcacctaaaaactgATATTTACTCAATTTATTCTCCCTCAAGTAGTTTAAGCCTTTGTATGTCTTCATGGTAGCAAAAACAAATCgaagtcaagggttacaggttttcagcatacttcaaaatgtcttatttggagtttaacagaagaaataaacttctAGATGTTTAGGTAAGTTAGTAAATGTTGACAGTATTTCCATTTTCATgtgaactgttgctttaaatccagtgtaaatgGCGAAGAATGATCACGGTTATCATAGTAGCATAACAACAACCATTAGCTGATGTTTTGTGATCTAATCGAACaggtttttgtttattattgtgattttatttgaatgtgtttttgcAGAATCCGACTGCTCGTACTGGAGATGGACGAAAGAAACCGGATTGTGGTCCAAGAAATGTCTGTTTTGCCTTTTTCCACTCGATGTTGATGTCGAGGACTCGCAATGTCGTTCATGCGCATGCGCAACTGTGTCACATTCTGCAGCCGCCGTCACGCGACCTGCTGCAGcagtgtgtatgagagagtgagagtgtgtctgtgtgtgtgtgtctgtgtgtcatgTCTTATAAACGTTTGTTGACTTTTATAACTATTAAAACGTGTTCAGCTGAAGGAAACTATTCTGAGAGTAGAGAATATGTAAACTTGTGTAATGGaagataaattattataataaagacaTTTTGCATTCAT
>TCONS_00059871
CAATCAACGAAGACACACGTGATGCTCGTGTTTGAGAAAACCGTGTGACTTCAGCGATGTTGTTTACACGCATTAACAGACTTGCAGAGAGAAGCTCCTCAAGAAAATGGCTGCAGAAATGGAAAGATTCACTTCATTCGAAGAGGCGCATTACGACCAATATGATTATTATAACCTGGAGGATTATTCCTCTCACGCTGGAGGGAAAGGCAGGAGTAAGAAGGAGATCTGCCTGAACACGAATCGCCATTCTCCAGCGGGACACGAGCGCAAAATCGCTGGAAAACTGCAGAACAGCGAGCTGAAACGCCGGAGAACCAAGAGCTGCTCCTCCTGAGGACATTCCCGGAGAATCCGACTGCTCGTACTGGAGATGGACGAAAGAAACCGGATTGTGGTCCAAGAAATGTCTGTTTTGCCTTTTTCCACTCGATGTTGATGTCGAGGACTCGCAATGTCGTTCATGCGCATGCGCAACTGTGTCACATTCTGCAGCCGCCGTCACGCGACCTGCTGCAGcagtgtgtatgagagagtgagagtgtgtctgtgtgtgtgtgtctgtgtgtcatgTCTTATAAACGTTTGTTGACTTTTATAACTATTAAAACGTGTTCAGCTGAAGGAAACTATTCTGAGAGTAGAGAATATGTAAACTTGTGTAATGGaagataaattattataataaagacaTTTTGCATTCAT
>TCONS_00059870
CAGACTTGCAGAGAGAAGCTCCTCAAGAAAATGGCTGCAGAAATGGAAAGATTCACTTCATTCGAAGAGGCGCATTACGACCAATATGATTATTATAACCTGGAGGATTATTCCTCTCACGCTGGAGGGAAAGGCAGGAGTAAGAAGGAGATCTGCCTGAACACGAATCGCCATTCTCCAGCGGGACACGAGCGCAAAATCGCTGGAAAACTGCAGAACAGCGAGCTGAAACGCCGGAGAACCAAGAGCTGCTCCTCCTGAGGACATTCCCGGAGGTCAGCAGCTTTCCTGTGGTCTTTGATCTGTGTTTGTTTGACCCTCTGGGCCTCAGGCATGTCCAGGCAGATCCTCCACCCTTTCTGAAAGACACCACCTCCATGTTTACATGCTCATTGgggataaagttggttttatattcgctcaTTCAGACTTTATCCGTAATAATATAGttttagaaaagtattatttgctaaattataTTAGCAcccaaatgactatcaaagtacaattgttcacagtcaaataaatagtgctaatgttgtcaCTTGCATGTGGTTTCAGACCGAATGTTCAAAGTAGCGTGATAAACAATATAGAAACCgttaaaatgaacatatttattaaatattaaaccaactttacctcacttGGTTCGACACTGTGGACCTTAGGCAGATCCTCCACCCTTTCTGAGCACCACCTCCATGCTGCCTTTAATGTGGACGTTAACAGTTTTATTATTCTGattattagttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacacacacacacacacacacacacacaacatcttATGTTTCAAGTGTCATGCAACGTTAACTGTTTTATTGTGATCATTCCTCGTCATTTTTACATTGGTGctgtatttaaagggatagttcacctaaaaactgATATTTACTCAATTTATTCTCCCTCAAGTAGTTTAAGCCTTTGTATGTCTTCATGGTAGCAAAAACAAATCgaagtcaagggttacaggttttcagcatacttcaaaatgtcttatttggagtttaacagaagaaataaacttctAGATGTTTAGGTAAGTTAGTAAATGTTGACAGTATTTCCATTTTCATgtgaactgttgctttaaatccagtgtaaatgGCGAAGAATGATCACGGTTATCATAGTAGCATAACAACAACCATTAGCTGATGTTTTGTGATCTAATCGAACaggtttttgtttattattgtgattttatttgaatgtgtttttgcAGAATCCGACTGCTCGTACTGGAGATGGACGAAAGAAACCGGATTGTGGTCCAAGAAATGTCTGTTTTGCCTTTTTCCACTCGATGTTGATGTCGAGGACTCGCAATGTCGTTCATGCGCATGCGCAACTGTGTCACATTCTGCAGCCGCCGTCACGCGACCTGCTGCAGcagtgtgtatgagagagtgagagtgtgtctgtgtgtgtgtgtctgtgtgtcatgTCTTATAAACGTTTGTTGACTTTTATAACTATTAAAACGTGTTCAGCTGAAGGAAACTATTCTGAGAGTAGAGAATATGTAAACTTGTGTAATGGaagataaattattataataaagacaTTTTGCATTCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-070705-255 Predicted to be involved in negative regulation of cell cycle; negative regulation of cell population proliferation; and regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human NUPR1 (nuclear protein 1, transcriptional regulator).

Ensembl:

ensembl_id ENSDARG00000094300

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061913 False 790 lncRNA 0.37 1 1997764 1998553
TCONS_00059871 False 705 lncRNA 0.45 2 1997764 1999493
TCONS_00059870 True 1653 mRNA 0.38 1 1997765 1999417

Neighbor

gene id symbol gene type direction distance location
XLOC_030745 NA coding downstream 6098 1989460 ~ 1991666 (-)
XLOC_030741 rplp0 coding downstream 34266 1950660 ~ 1963498 (-)
XLOC_030744 CT573103.2 coding downstream 35355 1962282 ~ 1962409 (-)
XLOC_030743 CT573103.5 coding downstream 37564 1960073 ~ 1960200 (-)
XLOC_030742 CT573103.1 coding downstream 44986 1952652 ~ 1952778 (-)
XLOC_030747 gusb coding upstream 66769 2066262 ~ 2112030 (-)
XLOC_030748 CR931815.1 coding upstream 213179 2212672 ~ 2212788 (-)
XLOC_030749 ca4a coding upstream 242230 2241723 ~ 2282256 (-)
XLOC_030750 cita coding upstream 410061 2409554 ~ 2636078 (-)
XLOC_030751 RAB35 coding upstream 651919 2651412 ~ 2676783 (-)
XLOC_030740 NA non-coding downstream 91227 1879511 ~ 1906537 (-)
XLOC_030755 FQ323163.1 non-coding upstream 772796 2772289 ~ 2775472 (-)
XLOC_030756 NA non-coding upstream 1087738 3087231 ~ 3089463 (-)
XLOC_030758 NA non-coding upstream 1167706 3167199 ~ 3169025 (-)
XLOC_030760 CABZ01076744.1 non-coding upstream 1258630 3258123 ~ 3266117 (-)

Expression


Co-expression Network