XLOC_003076 (CABZ01074708.1)


Basic Information

Item Value
gene id XLOC_003076
gene name CABZ01074708.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 44268481 ~ 44275885 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005636
CGCTCTCCACACACACTCGGGGGTGTAATCATGTCCACTGATGACAGCATCTCGGAGGACGCGTCCAGCTCTGTGGCCCTGAGCCACGAACATGGAGGAAAGCAGAGCGAGGCGTCTGGAGGATCCTCAGAAAGACACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcacacacataaacaaacaaacacacacacacacacacacacacacacacacacacgtgctgcTATTGTagacattcagtcattttctttcggcttagtgccttattgATATGGGggcgccacaacggaatgaaccaccaactattccagcatatgttttacatggtggatgcccttccaactgcaacccagtactgggaaacacttatacacactcatttacacacacacattcatacactacggccagtgtagttgatcagttcccctaaagcgcatgtgtttggactgtgggggaaaccggagcacccggaggaaacccacaccaacacggggagaacatgcaaactccacacagaaacaccaactgacccagccgagactcaaaccagagaccttcttgctgtgaggccacagtgctgaccactgcgccactgtgccgcCCATTAAAGAATAAGATATTAAAAAGTTGTAGGATTTAAGCTGCTGATGAGTCTTGATGATCAATATTCGTGTGGGGTATTGCTTTATAAAGTCCTCTATAACATATTGACTCATCTGCTCTGTGTAGTGTTGCTTTAATCACTATTAGTCATTCTGATTAAAAtaactaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcccgcaGGAGTCTGTGTCTGGGAAGCGCAGGCCGCAGTTTGCCCTTCATCAACCCCAGCTCCATGGAGACTCTGCGGGCCCTGGTGCAGGAGATCCAGAGCAGCGGAGAGACCGACCCCCAGATCTGGAGGAACTGTGAGGGCCGCTGGCTGCATCTGTTTCAGCTGGTGGAGAAACAGTATCAGGAGCAGATCCTGGCCCAGCAGGAGCAGTACCAGTGCCAGATACAGCTCATCCAGGATGAAATTAAAGCTTTAGTGCAGCTCCAGAACAGGCAGACTCCGTCTCAGGACGCCGCCCGCAGCCCCAGACCCCTACAGGACCCGGCGGAGAGCAGGTCAGAGGAGGGCATGCTGACGGTGGAGAGCAGCGGGTACGGCACGCTGTCGGCCTGGGAGCAGGCGCTGGACTCCGGCAGACAGGAGGCGCTGCTGTGGTCCCCCAACCCCAGCCTGACCCCGTCCCCGTCCCCGGGCCCCCAgaacacccacaaacacacacgcatcaGtcagCCCCTGACCTCGTGGGCTCAACGGCACAAACAGAAGAGGAGCGGTGTGTGTGCGGCgcagcagcagcagaagagcgCAGCAGGATCTCCAGAGCAAACACACACTTCACCCTCGTGTGTGAGCAGTGCAGTCTCGCTCGGTGTGATTCCTCTACAGAGAGCTGACAGCGTGGCGTCTGAAACCTCAGGTAACGCTGAACAAGCACAATGTctttaacttaaataaaataaacatttacaataaatgaaaacTCAATTAAACTAACAACAGTCACTAAAaacaagctgaaataaaatacaataaattacaataaattaaaaactaaatataaatactaACAGTCAcagaaaaaaactgctgaaattatatttaaaaattacaatattaacaactaaactaaaataaaacgaATAGTCACAGAAaaactgactaaaataaaataaaacatttaaaactaaaacaaaaaactgtAAGCTCACTGAAAAAGTGGAGTTAACCAAA

Function

GO:

id name namespace
GO:0048193 Golgi vesicle transport biological_process
GO:0006508 proteolysis biological_process
GO:0140096 catalytic activity, acting on a protein molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117699

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005636 True 1933 lncRNA 0.46 5 44268481 44275885

Neighbor

gene id symbol gene type direction distance location
XLOC_003075 CABZ01085662.1 coding downstream 15377 44242236 ~ 44253104 (-)
XLOC_003074 CABZ01087091.1 coding downstream 27362 44239844 ~ 44241119 (-)
XLOC_003073 crybb1 coding downstream 241090 44021147 ~ 44027391 (-)
XLOC_003072 acads coding downstream 250816 43999263 ~ 44017665 (-)
XLOC_003071 sept5b coding downstream 304453 43936252 ~ 43964028 (-)
XLOC_003077 zswim6 coding upstream 20978 44296863 ~ 44341288 (-)
XLOC_003078 CDK2AP1 coding upstream 26335 44302220 ~ 44306636 (-)
XLOC_003079 sbno1 coding upstream 34112 44309997 ~ 44355534 (-)
XLOC_003080 NA coding upstream 105033 44380918 ~ 44387802 (-)
XLOC_003081 CABZ01072096.1 coding upstream 132790 44408675 ~ 44411032 (-)
XLOC_003068 CT583727.1 non-coding downstream 435813 43831882 ~ 43832668 (-)
XLOC_003062 NA non-coding downstream 728297 43453171 ~ 43540184 (-)
XLOC_003064 dre-mir-9-2 non-coding downstream 732386 43535960 ~ 43536095 (-)
XLOC_003063 NA non-coding downstream 772265 43484627 ~ 43496216 (-)
XLOC_003084 CABZ01072084.1 non-coding upstream 218034 44493919 ~ 44501719 (-)
XLOC_003090 NA non-coding upstream 698351 44974236 ~ 44976643 (-)
XLOC_003094 NA non-coding upstream 771344 45047229 ~ 45051538 (-)
XLOC_003097 NA non-coding upstream 1079739 45355624 ~ 45357482 (-)

Expression


Co-expression Network