XLOC_003077 (zswim6)


Basic Information

Item Value
gene id XLOC_003077
gene name zswim6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 44296863 ~ 44341288 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005637
tgtattaataaatGTTTGCAGGTCCGGTTCCACCTGAGCGGTACAGTGACGGAGCCGGCAGTGGGGGCGGAGCCTGAGCAGGTGTGCAGCGTGGCCATCAGCTTCGACCGCTGTAAGATCACCTCCGTCACCTGCGGCTGTGGGAACAAGGACATCTTCTACTGCGCCCATGTGGTGGCGCTGTCGCTGTACCGCGTGCGCAGGCCGGAGCAGGTGAAGCTGCACCTGCCCATCTCAGAGACACTGTTCCAGATGAACCGAGACCAGCTGCAGAAACTGCTGCAGTACCTGATCAGCGTTCACCACACACAGGTGCTGCCCACCGCACAGAGACTGGCGGACGAGATCCTGTCGCAGAACTCGCAGATCAACCAGGTGCACGGGGCCCCGGACCCCACCGCAGGGGCCAGTGTGGACGATGAGAACTGCTGGCACCTGGATGAGGAGCAGGTGCAGGAGCAGGTGAAGGTGTTCCTGTCTCAGGGCGGATACCACGGCTCCGGGAAACAGCTCAACCTGCTGTTCTctaagTTCAGAATCAATAAATCAATGGAGATTCAGAATCAATGGAGAGTGAATCAGTTCAGTTCAGAATCAATAGTGAGTGAATCAGGCATGGCGCTGTGGAAGCAGAAGTCCTACAGTCTTCTTACTAATTatactacattatTAGACGAGCTAAgcgctctGTGGATGTGTATTGTGCTCAATCCTCACTGTAAGCGGGAGCAGAAGGCCTCGTGGCTCCGGCAGCTGAAGAAGTGGAACGGTGTGGACGTGTGTCCCCTGGAGGACGGTAACCACGGCAGCGAGCTGCCCAATCTAACCAATGCCCTGCCTCAGGGTGCGCACGGCAACCAAGATTCAGCTTCCCGCCCGCACCGGACCGTCTTCACGCGCGCCATCGAGGCCTGCGATCTGCACTGGCAGGACACACACTTACAGCACATCATCAGCGACGACCTCTACACAAACTACTGCTACCACGAGcacactgaaaacacactgtTCGACGTGCGCGGATGGCCCCTGTGGCacgagcaCGTCCCGACGGCCTGTGCGCGTGTGGATGCGCTGCGCTCTCATGGTTATCCTCAGGAAGCTCTGCGATTGGCCATCGCTATCGTCAACACACTGCGGCGGCAGCAGCAGAAACAGCTGGAGCTCTTCCGCAACCACAGGAAAGATGTGCTCCATAAAGGCGTGACGTCCATCACCAACCTGGAGGGCTGGGTGGGTCACCCTCTGGACCCCATCGGGACGCTGTTCAACACTCTGATGGACACGGGCCGGGGGGATGAGGACACCTCCCACTGCACATTCCTGGACTTCTCAGCCGGCTCCAGCAGGCACAGTGAGCTCTTGTTTCCGTCTGCGCGGCGGTTCCTGGAGGACGGAGAGTCGTACCTGGCGCTGGCAGTGGAGACGGCGCTGATGGGTCTGGGGCAGCAGCGGGTGATGCCCGACGGTCTGTACGCCCAGGAGAAGGTCTGCCGCAACGAGGAGCAGCTGATGGCCAAACTGCAGGAGGTGGAGCACACTGATGCGGCTGTGGCAAGATTTAGAGGCAGAGCTGTATTTatgcttcattgcggGCCCTACAGCGGTCTGGGAGAGCTGGTCTACAGAGAGAGCGTCCCCATGCACACCTTTGCCAAGTACCTGTTCACAAGTCTGCTACCTCACGACGCCGAACTGGCCTATAAAATTGCACTGAGAGCGATGCGgtTACCCGTGCTGGAGTCGTCCGCGAGTGTGTCGTCTGATCTGACGCGTCCTCATCATCTGGTGTCGGTGGTGCCGAACCGTTACCCGCGCTGGTTCACACTCAGCCACATCGAGACACAGCAGTGTGAGCTCGCATCCACCATGCTGACTGCTGCTAAAGgggaCGCGCGGCGGCTGGAGACAGTATTAGAGTCCATCCAGAAGAGCATCCACTCGTCTTCACACATCTTCAAGCTGGCGCAGGACGCCTTCAAGATCGCCACACTGATGGACACACTGCCGGACATTACCCTGCTGAAGGTGTCACTGGAGCtgggcctgcagGTGATGCGCATGACTCTGTCCACACTGAACTGGCGGCGGAGGGAGATGGTGCGCTGGCTGGTCACCTGCGCCACTGaagtggGTGTGTATGCTCTGGACAGCATCATGCAGAGCTGGTTCACCCTCTTCACCCCCACTGAAGCCACCAGTCTGGTTGCGAGCTCGGTGATGTCCAACAGCAGTGTGGTGCGCCTGCGGCTGGACGGGCACCAGCAGGAGAACCTGGCGGGCAGCGCTCGGACCCTGGCCCTGCAGTGCGCCATGAAGGACCCTCAGAACTGCGCCCTGTCCGCGCTCACGCTGTGTGAGAAGGACCACATGGCGTTCGAGACGGCGTATCAGATCGTGCTGGACGCCGCCGCCACGGGCATGAGCTACACGCAGCTGTTCATCATCGCCCGCTACATGGAGCACCGCGGGTACCCGCTGCGGGCGTACAAGCTGGCCACGCTGGCGCTGGCGCACCTCAACCTGAGCTACAACCAGGACACACACCCGGCGATCAACGACGTGCTGTGGGCGTGCGCGCTGGCACACTCGCTGGGCAGGAGCGAGCTGGCGGCCGTCGTCCCCCTGGTGGTGAAGAGCGTGAAGTGCGCCACGGTGCTGTCCGACATCCTGCGGCGCTGCACGCTGAGCTCGCCGGGCGCCGCGCCGCTGCACGCCCGCAGGAACGCCAGCAAGATGCTGTCGCTGGATAAAGCGCCGCTGCGGCAGCTGCTGGACGCCACCATCGGCGCCTACATCAACACCACACACTCGCGGCTCACACACATCAGCCCGCGACACTACAGCGAGTTCATCGAGTTCCTCAGTAAAGCGCGCGAGACCTTCCTGATGGCGCAGGACGGACATCTGCAGTTCACACAGTTCATAGACAACCTCAAGCAGATCTACAAGGGCAAGAAGAAGCTGATGATGCTAGTGCGCGAGCGCTTCGGCTAG

Function

symbol description
zswim6 Is expressed in hindbrain; midbrain; retina; and telencephalon. Human ortholog(s) of this gene implicated in acromelic frontonasal dysostosis. Orthologous to human ZSWIM6 (zinc finger SWIM-type containing 6).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-060602-4 Is expressed in hindbrain; midbrain; retina; and telencephalon. Human ortholog(s) of this gene implicated in acromelic frontonasal dysostosis. Orthologous to human ZSWIM6 (zinc finger SWIM-type containing 6).

Ensembl:

ensembl_id ENSDARG00000101282

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005637 True 2997 mRNA 0.60 23 44296863 44341288

Neighbor

gene id symbol gene type direction distance location
XLOC_003076 CABZ01074708.1 coding downstream 20978 44268481 ~ 44275885 (-)
XLOC_003075 CABZ01085662.1 coding downstream 43759 44242236 ~ 44253104 (-)
XLOC_003074 CABZ01087091.1 coding downstream 55744 44239844 ~ 44241119 (-)
XLOC_003073 crybb1 coding downstream 269472 44021147 ~ 44027391 (-)
XLOC_003072 acads coding downstream 279198 43999263 ~ 44017665 (-)
XLOC_003080 NA coding upstream 39630 44380918 ~ 44387802 (-)
XLOC_003081 CABZ01072096.1 coding upstream 67387 44408675 ~ 44411032 (-)
XLOC_003082 ccdc62 coding upstream 121159 44462447 ~ 44467384 (-)
XLOC_003083 hip1ra coding upstream 132563 44473851 ~ 44482911 (-)
XLOC_003084 CABZ01072084.1 coding upstream 152631 44493919 ~ 44501719 (-)
XLOC_003068 CT583727.1 non-coding downstream 464195 43831882 ~ 43832668 (-)
XLOC_003062 NA non-coding downstream 756679 43453171 ~ 43540184 (-)
XLOC_003090 NA non-coding upstream 632948 44974236 ~ 44976643 (-)
XLOC_003094 NA non-coding upstream 705941 45047229 ~ 45051538 (-)
XLOC_003097 NA non-coding upstream 1014336 45355624 ~ 45357482 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000168_00179369_00184905 ZSWIM6 coding CI01000168 null 178605 ~ 184905 (-)
bowfin (Amia calva) AMCG00010601 zswim6,LOC108425190,LOC107704169 coding CM030129.1 CM030129.1 36741485 ~ 36770547 (+)