XLOC_003078 (CDK2AP1)


Basic Information

Item Value
gene id XLOC_003078
gene name CDK2AP1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 44302220 ~ 44306636 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005638
GACTCTCTCCTTCCTCCGGTCGCTGATCTTCAGGTGAGTCCACTctcaatgtgtgtgtgcaggaaacCCTCCTCTGCGTCCTCCATGGCATCAGTTCAGTCTTATAAACCCATCCTGAATGACTTCGGTCCTCCTTCACTGGGCTTCcctcagGGTCCGAATGGTGGTCAGGTTCCTCAGAGTAAATATGCGGAGCTGCTGGCCATCATAGAGGAGCTGGGCAAGGAGATCAGACCCACATATGCCGGCAGTAAAAGCGCCATGGAGCGACTgaagagagGCATCATTCACGCCCGGGGGCTGGTGCGCGAGTGTCTGGCAGAGACAGAGAGGAACGCCCGGTCCTAG
>TCONS_00005639
GGGTTATTAGGCAATAATGTGAAGTGGAATGTTCATTACTCTGCTCAGACTGCAGTTCCCACACTgaaacCCTCCTCTGCGTCCTCCATGGCATCAGTTCAGTCTTATAAACCCATCCTGAATGACTTCGGTCCTCCTTCACTGGGCTTCcctcagGGTCCGAATGGTGGTCAGGTTCCTCAGAGTAAATATGCGGAGCTGCTGGCCATCATAGAGGAGCTGGGCAAGGAGATCAGACCCACATATGCCGGCAGTAAAAGCGCCATGGAGCGACTgaagagagGCATCATTCACGCCCGGGGGCTGGTGCGCGAGTGTCTGGCAGAGACAGAGAGGAACGCCCGGTCCTAG
>TCONS_00005640
ATGACTCGTTCTCATCTTGACATtgtttctcaaccatgctcctggaggagcaccagcactgcatgtttcgGATTTCAGTCTTATAAACCCATCCTGAATGACTTCGGTCCTCCTTCACTGGGCTTCcctcagGGTCCGAATGGTGGTCAGGTTCCTCAGAGTAAATATGCGGAGCTGCTGGCCATCATAGAGGAGCTGGGCAAGGAGATCAGACCCACATATGCCGGCAGTAAAAGCGCCATGGAGCGACTgaagagagGCATCATTCACGCCCGGGGGCTGGTGCGCGAGTGTCTGGCAGAGACAGAGAGGAACGCCCGGTCCTAG

Function

symbol description
cdk2ap1 Enables DNA polymerase binding activity. Involved in positive regulation of protein phosphorylation. Located in cytosol; nucleoplasm; and perinuclear region of cytoplasm.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000115248

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005638 False 348 mRNA 0.57 4 44302220 44305180
TCONS_00005639 False 351 mRNA 0.54 4 44302220 44306399
TCONS_00005640 True 327 mRNA 0.55 5 44302220 44306636

Neighbor

gene id symbol gene type direction distance location
XLOC_003076 CABZ01074708.1 coding downstream 26335 44268481 ~ 44275885 (-)
XLOC_003075 CABZ01085662.1 coding downstream 49116 44242236 ~ 44253104 (-)
XLOC_003074 CABZ01087091.1 coding downstream 61101 44239844 ~ 44241119 (-)
XLOC_003073 crybb1 coding downstream 274829 44021147 ~ 44027391 (-)
XLOC_003072 acads coding downstream 284555 43999263 ~ 44017665 (-)
XLOC_003079 sbno1 coding upstream 3361 44309997 ~ 44355534 (-)
XLOC_003080 NA coding upstream 74282 44380918 ~ 44387802 (-)
XLOC_003081 CABZ01072096.1 coding upstream 102039 44408675 ~ 44411032 (-)
XLOC_003082 ccdc62 coding upstream 155811 44462447 ~ 44467384 (-)
XLOC_003083 hip1ra coding upstream 167215 44473851 ~ 44482911 (-)
XLOC_003068 CT583727.1 non-coding downstream 469552 43831882 ~ 43832668 (-)
XLOC_003064 dre-mir-9-2 non-coding downstream 766125 43535960 ~ 43536095 (-)
XLOC_003063 NA non-coding downstream 806004 43484627 ~ 43496216 (-)
XLOC_003084 CABZ01072084.1 non-coding upstream 187283 44493919 ~ 44501719 (-)
XLOC_003090 NA non-coding upstream 667600 44974236 ~ 44976643 (-)
XLOC_003094 NA non-coding upstream 740593 45047229 ~ 45051538 (-)
XLOC_003097 NA non-coding upstream 1048988 45355624 ~ 45357482 (-)

Expression


Co-expression Network