XLOC_003083 (hip1ra)


Basic Information

Item Value
gene id XLOC_003083
gene name hip1ra
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 44473851 ~ 44482911 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005644
GTTTGACATCACAGGTGAAGTTCTGGACTACATGGAAGCGGGTCTGAAACTGCAGGAAACAGTTTTCCGTCAGATGGATTCCCACTCCACCAGCTCCACCACAGCTGTGGGTCAGTGTCGTCTGGCTCCGCTGGTTCTGCTCATCCAGGATTCTGGTCCGCTTTATCATTTCCTGGTCAAGCTGCTGTTCAAGCTGCACAGCCgaatACCGGTGGACGCTCTGTTAGGACACAGAGACCGATTCCGCGATCACTTCAACAGTTTGACAGAGTTTTTCGAGAGAGCGAGGGGAATCGAGTTCTTCAAAACCATCATTCAGATCCCTGATCTGCCCAACgaGCCTCCAAATTTCCTGCGTGCGGCGTCGCTGGCGGATCATGTGAAGCCGGTGGTCGTCCAGAATGAGAGATTTGTTTATGATGACGAAACCGAGACGCAGGCGGACTTCAGTGAAGGACAGTTTCAGCCGTATTATGGGTTCAACCAGTTTGATTATCCAGTCGATGTACCGGAGCAAAGAGAGACGGAGGCTGATTCCCTGAGGAAGGAGCTGGAGGTGGTGAAGCCGGAGCTGGAGCTCATCAAAGTGGAGgcccaGCGCGCCGTCGTGCAGCTCAAATCTCAGGTGAATAAGCTGGAGTCGGAGTTGGAGGAGCAGCGGACGCACAAGCAGATGGCGCTGGTGGAGAACGAGAGGCTGCGCATGCAGGTGGAGAACATGAGGATGGAGAACACAGCCAGCGTACAGGCCACAGTGGAGGACCACAgcaACCGAGCGCAGACGGCTCAGATTCACTTCGCTCGACTCAAAGAGAAACACGCGGAGCTGGTCAGCAGACACGCAGATCTCATGCGCAAGAATGCAGAGATGCTGAAGCAGAAGAGCAGCGGTCAGCAGGCGCAGGAAGAGCTTCTGGCCTACAGACAGCAGGTGGCGCAGGAGATGCAGCAGCTCACACTGGACAACAACAGCAAGCTGGAGGCCCAGAGAGCAGAAATTGAGCGTCTGAAGCAGGAGTTGGTGAGCGGCAGAGCTGAAGTTTCTCAAGTCCATAATGCACTGCAGAGCAAGGAGAAGGTGAGCGTGCGCATGTCATTGTGTGTGATTGTCTGTGTGGCACTTTGTTGGAAAATTAAATGTCCTAGGTACTATTAAGAAAACACGTCTactcaaaatacaacacacacTGGGGGATTGAAAACACTTAAGGGCCCATTTCTCGgttcatttgacaagtgtgagtgctctgaatcgggctcaggcgtgGTTCAGTTTGCCGGTCCTGGCCCGGTCGGAAGAGGTGGTCCAGAGCACTAAACCCTATTGAAGAGTTGCTTTTCCGCTTGGAGATGGCGTGAATCCCAGCACACACATTTGGCTTGTTTTTCTGTGTGTACAGTAGTGTGAAACACTGATTATGTAGAGTACAAAGTTTAGCAAACATCGCTCAAGCAGCAGACAGAAACTCTGATAATCCTTCATCATGATTATTTTTGCAGATTAAATGTTATTTCACAAAAAT

Function

symbol description
hip1ra Predicted to enable actin binding activity; clathrin binding activity; and phosphatidylinositol binding activity. Predicted to act upstream of or within apoptotic process; endocytosis; and regulation of clathrin-dependent endocytosis. Predicted to be located in clathrin-coated pit and clathrin-coated vesicle.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000060627

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005644 True 1523 mRNA 0.51 11 44473851 44482911

Neighbor

gene id symbol gene type direction distance location
XLOC_003082 ccdc62 coding downstream 6467 44462447 ~ 44467384 (-)
XLOC_003081 CABZ01072096.1 coding downstream 62819 44408675 ~ 44411032 (-)
XLOC_003080 NA coding downstream 86049 44380918 ~ 44387802 (-)
XLOC_003079 sbno1 coding downstream 118317 44309997 ~ 44355534 (-)
XLOC_003077 zswim6 coding downstream 132563 44296863 ~ 44341288 (-)
XLOC_003084 CABZ01072084.1 coding upstream 11008 44493919 ~ 44501719 (-)
XLOC_003085 DUSP26 coding upstream 20908 44503819 ~ 44508249 (-)
XLOC_003086 CABZ01072083.2 coding upstream 30320 44513231 ~ 44517186 (-)
XLOC_003087 npm2b coding upstream 69637 44552548 ~ 44560302 (-)
XLOC_003088 tacr1b coding upstream 286139 44769050 ~ 44788554 (-)
XLOC_003076 CABZ01074708.1 non-coding downstream 197966 44268481 ~ 44275885 (-)
XLOC_003075 CABZ01085662.1 non-coding downstream 220747 44242236 ~ 44253104 (-)
XLOC_003068 CT583727.1 non-coding downstream 641183 43831882 ~ 43832668 (-)
XLOC_003064 dre-mir-9-2 non-coding downstream 937756 43535960 ~ 43536095 (-)
XLOC_003090 NA non-coding upstream 491325 44974236 ~ 44976643 (-)
XLOC_003094 NA non-coding upstream 564318 45047229 ~ 45051538 (-)
XLOC_003097 NA non-coding upstream 872713 45355624 ~ 45357482 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000177_00061966_00080120 NA coding CI01000177 null 61966 ~ 80120 (+)