XLOC_030868 (CABZ01077121.1)


Basic Information

Item Value
gene id XLOC_030868
gene name CABZ01077121.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 11278426 ~ 11283521 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060019
AGAATGAACCTCAGACATGCAAGCCTGTTTGACCTTTAGGTGACATGAAgATAATAGACCTCAGCAGGAAGCTCTTGGGCCAGAAAATGTTTGAGCAGTTTATGAAGATGACGTTCTACGGTCAGTTTGTGGCAGGCGAGGACCATCAGTCCATCAGGCCGGTCGTACAGAAGAACCAGGCGTATGGAGTGGGAGCTGTGCTGGATTACAGTGTAGAAGAGGATCTCTCACAGGAAGAGGCTGAAAGGAAAGAAATGGAGTAAGTTTTGATGTAAACAAGATCAAACGACCAGGTTTCAAATAATATTAACCCAAAAACtttaattctgtcattgtttattcGCTCTATACTTGTTCCAAGTCTAttagtgtttttcttttcttctgttgaacacaaaatatgatgTTTTGAAGAGTGCTGAAAACTTTTAACCATTAACTTCAATTATATTTGCAATTCTTTGCATGGATGCTGTTGCACActggtatttaaaaaatctaaatacatacatatttacatataaattatgtaaattatattagatttttttaggaGATTGTTGTTGAAGATTGTTGTTCTGCTAATTATTTCAAAGGGTTAACCTGttttgtctgttgaacacaaaaaaaatatatttcgaagaatgctgaaaacctgtaaccattgacttgcattttatttgcttttcttAGCATGGAAGTTGATGTTgtaaaaatgaggaaaaaagtTTACCTGGtcatttcaaacctgtttgagtttctctttcttctgttgaacacaagtagatattttgaggaatgctgaacACCTGTATCCATTGACCtcattttatttgcttttcctaGCATGGATTTTGTAATTGTAatcatttacaataaaacattaaattattaaattatttaaattatttcatctTGATAGTAGAATGTTGTTCAAGATGTTCAGTTGATtatcttaaaggcatagttcacctcaaaatgaaaaaaataaattaaattactcgTTTCgaacctgtttgattttctttcttctgttgaacacgcacactaaaaaagatatataaaaatatattggagacttgtaaccattcacttccatagtatttgtcttTCCTACTGAAGATGTTTacagtttttcagctttcttccaaaCATCTTCTTTTCAGAGATACTCTAAAGATTTTGAAGGACTCGATGGGAGAGTAAATTGTcttttttgggtgatctatccctttaattcgTTTTCTGGCATTTATTTGCAGAGCACACAAgccaaacttgactaattaatgggcaaataaataaatcagtgatcagtgtgtgagtGGAATATAAATGTGTGCAATTATTTTGTTCCATAGCACTTGATTAGCTTAATTTAAAGCAgcttgttaagtttttttttctttgttggtATTTActgttttccagttttttttttggggggggggggggcaatcattaaagtttatttttccatttaaaggggacctattaagCACACATCACCTTTATATGGGgtttaaacatttctgtggcagCAGTCTGTGAATATGACCAGCTTCTTTtagtaaaaatgtattgattttatttttttaaattacacttgataaaaacagaagcagaaacactttgattgacattctcctttttGTA
>TCONS_00060020
AAACTAGAATACGGGGCGGGACTTACAGGTTGCGTTCAATGTGTTCGGTTGGTTTTCAGCACTAGCAGtggatcattttttattttatgaacatTGTCAACATTAGAGTCTCGGGCTGATGTCTCTCCGCAAAACTCTAACGTTACCCAGATTTGGGTTCGCGGCTCGTGACCGAAGTTTTAGAAATTTGGTGACCTCCACTTGTCGCTATcatcaaaccaaaacaaacacacaagaggAGTCCGTTAACAGCAGTGAGCATGACTCCTTCAATAGCAAGATCTCCATCGACTTTGAACTGACCAGAGAAGCCTACAAGAGCAAAGACACTCTTGAGCTGCTGAGAAGCTTGGTCGTTTTCAAACTGTGCTCCTATGACATACTGGTCGATAAGAATAAAGAgATAATAGACCTCAGCAGGAAGCTCTTGGGCCAGAAAATGTTTGAGCAGTTTATGAAGATGACGTTCTACGGTCAGTTTGTGGCAGGCGAGGACCATCAGTCCATCAGGCCGGTCGTACAGAAGAACCAGGCGTATGGAGTGGGAGCTGTGCTGGATTACAGTGTAGAAGAGGATCTCTCACAGGAAGAGGCTGAAAGGAAAGAAATGGAGTAAGTTTTGATGTAAACAAGATCAAACGACCAGGTTTCAAATAATATTAACCCAAAAACtttaattctgtcattgtttattcGCTCTATACTTGTTCCAAGTCTAttagtgtttttcttttcttctgttgaacacaaaatatgatgTTTTGAAGAGTGCTGAAAACTTTTAACCATTAACTTCAATTATATTTGCAATTCTTTGCATGGATGCTGTTGCACActggtatttaaaaaatctaaatacatacatatttacatataaattatgtaaattatattagatttttttaggaGATTGTTGTTGAAGATTGTTGTTCTGCTAATTATTTCAAAGGGTTAACCTGttttgtctgttgaacacaaaaaaaatatatttcgaagaatgctgaaaacctgtaaccattgacttgcattttatttgcttttcttAGCATGGAAGTTGATGTTgtaaaaatgaggaaaaaagtTTACCTGGtcatttcaaacctgtttgagtttctctttcttctgttgaacacaagtagatattttgaggaatgctgaacACCTGTATCCATTGACCtcattttatttgcttttcctaGCATGGATTTTGTAATTGTAatcatttacaataaaacattaaattattaaattatttaaattatttcatctTGATAGTAGAATGTTGTTCAAGATGTTCAGTTGATtatcttaaaggcatagttcacctcaaaatgaaaaaaataaattaaattactcgTTTCgaacctgtttgattttctttcttctgttgaacacgcacactaaaaaagatatataaaaatatattggagacttgtaaccattcacttccatagtatttgtcttTCCTACTGAAGATGTTTacagtttttcagctttcttccaaaCATCTTCTTTTCAGAGATACTCTAAAGATTTTGAAGGACTCGATGGGAGAGTAAATTGTcttttttgggtgatctatccctttaattcgTTTTCTGGCATTTATTTGCAGAGCACACAAgccaaacttgactaattaatgggcaaataaataaatcagtgatcagtgtgtgagtGGAATATAAATGTGTGCAATTATTTTGTTCCATAGCACTTGATTAGCTTAATTTAAAGCAgcttgttaagtttttttttctttgttggtATTTActgttttccagttttttttttggggggggggggggcaatcattaaagtttatttttccatttaaaggggacctattaagCACACATCACCTTTATATGGGgtttaaacatttctgtggcagCAGTCTGTGAATATGACCAGCTTCTTTtagtaaaaatgtattgattttatttttttaaattacacttgataaaaacagaagcagaaacactttgattgacattctcctttttGTA

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0043010 camera-type eye development biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0048880 sensory system development biological_process
GO:0001654 eye development biological_process
GO:0007423 sensory organ development biological_process
GO:0150063 visual system development biological_process
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117617

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060019 False 1656 lncRNA 0.33 2 11278426 11282892
TCONS_00060020 True 2009 lncRNA 0.35 2 11278426 11283521

Neighbor

gene id symbol gene type direction distance location
XLOC_030867 prodhb coding downstream 7217 11242291 ~ 11271209 (-)
XLOC_030866 NA coding downstream 240121 11037177 ~ 11038305 (-)
XLOC_030865 NA coding downstream 306825 10967799 ~ 10971601 (-)
XLOC_030864 rtn4r coding downstream 332047 10765611 ~ 10946379 (-)
XLOC_030863 CR790366.3 coding downstream 553761 10720894 ~ 10724665 (-)
XLOC_030869 NA coding upstream 73116 11356637 ~ 11466153 (-)
XLOC_030870 CABP7 coding upstream 219057 11502578 ~ 11573490 (-)
XLOC_030871 NA coding upstream 293152 11576673 ~ 11663328 (-)
XLOC_030872 nf2a coding upstream 440907 11724428 ~ 11809710 (-)
XLOC_030873 fbxw8 coding upstream 580908 11864429 ~ 11905920 (-)
XLOC_030862 BX511089.3 non-coding downstream 769612 10507826 ~ 10508814 (-)
XLOC_030861 NA non-coding downstream 777629 10488937 ~ 10500797 (-)
XLOC_030876 castor1 non-coding upstream 698843 11982364 ~ 12031921 (-)
XLOC_030880 CR735143.1 non-coding upstream 909377 12192898 ~ 12193014 (-)
XLOC_030881 BX276096.2 non-coding upstream 1082688 12366209 ~ 12366325 (-)

Expression


Co-expression Network