XLOC_030909 (si:ch211-244o22.2)


Basic Information

Item Value
gene id XLOC_030909
gene name si:ch211-244o22.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 14477282 ~ 14522712 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060090
AGATGGACTGGCAGATGCGTTAGAACTTGTAGTGCTATCTCGCGTCCtagaaatatataaacaaaacacacttaaaatgcGGTAAAATATAGCTGTAAATGCCTGCAAGGTTAACAACTGTAAAAATAAGTCGTTTATTTTAAGTTACCAAGGTGTTGTCGGGTTCCTCCAAGGCGGAAGGATATTTGCGCCGTTTTAACGTGCGattTCATATGCACTGGAGTCGAGCATGGATGTTACTGAAGCCATGGACAGCAGACCAGCACTTGCAGACTTGTCTCCCTCTCAGCAGAACACTGAAGCTGCGGATGTGGATTTCTCCAAACTCACCTCTTTACAGTTTGGGATATCAACAGACAGTTTCTTGCCGTCCTCTAAAAGTAAAGATAAGTCCAGAGTGGCTCAGCTGAAGGCTAGGAGGAGATCTACGATTGGGCTCCGGGGATCTCCAGAAACGAACTCGCTCATCTGCTTCAGAGCCAGACAAGCTGCAAAAACACCTCCCCGAACACCACAGCTTTTACAGGGGAGTCCTTTTCTTTCACGCTGTGACTCTCTGAAGAAAAAGATGGCTGCTTTCCAGTGTCTGATGGAGGACGATGAGGAGAAGGATGAATGGAAGAAAAATGAGGAGAATGAGAGTGCAAAAAGCACTTTGGCTAAGGATTCCCAGAACGGGAAGGAAAACACACCGACAACACCTAGCCCACCCATTTCAATGACGCCTCCTGCCTCTAAGAAACGCTGCTGGGCCCCACCAGGGGAGTGTGAGGACAAGATTACCAAGACGCCACTCCCCAACCCCACCGCTACAACACAGCAGGACCAAGGGGTTAAATGTACCGGGTCTCAAAGCCAGAGGCCTCTATCAGATGTGGATTCGGATGCAAAGAATGAGCTGCTTTCTTTACCCATGCTGTCAAAACCAGATATAAAGCCAGCAGatgaAAATGTGGTCTCCTCTGTATGCAAGAAGAAGCGTGTTCGTTTTGGGGCTCCACTATCTCCAGAGTTCTTTGACAAAGCTCTCCCTCCCAGTACACCACTGCAGAAAGGAGGCACCCCGAGGTGTCCTCCATCATCTACTGGTCCTAAACGCTCTCTGCTGAAGACACCTCAAAGATGTGAGCCCTCTCTTCCCCAACCTGACTTCAACAGCCCGCAAAGCAATGGAGCCTCTCCTGTCTTGGTTATTGACAGACGCAGCACCGGCCTTCTGTACAGCGATGAAGTATTTGAAGAGATTGAAAAGATCAGTTTTCCCATTATGGAGGAAGAGTCTCCCTCAAACCAGCTTCCAGGAAAATGGAAAGATGCACTCTTTGCTGAGGACACATGGAAGCCCCAGGCTGAAGAAACTGAAGTTATGAACGCTGCTTTTCAAGAGGAAGAGGATGTACCAGCAAATGTACAGACAGGGGATGAGCGGCCATGTACCACTGATGATCAGCCACTGGCTCTCTCTGTAGAGGCTGCAATCTCAGAAAAGACACTTTCATCCAACTCCAGCACTGAAGCAACTCGCTCTCGCGGTAGAAAAAGAAAGCAACCAGCCGAGAGTGAGCCTGAGAAAAGGAGAAGCTCACGTACAGCAGCAGTTTCTGCTTCAGGAAAGATGAAGAAAACGACAGGAGCAAAGAGAAAATTTGGAAATAAAGAGGTGGATCGTTCTCTCTATGGGAAAAGAGACTATGCCTCAAAAAACCCTCTGCTCAGCCCCATATTTGAGACAGCGTCTACCAGTTTCAACCTCACACCAACACAAAACCAATCAGGAAAAATAACAGATGGAGACCAAAATGGGATTCAGAAACCCAGTGTTCCCCAAAGTAAGACACTTCGTCCCGTGGTAGGTCTGGGAACTGCCAGTACATGGACCAATGAGTCACCAAGCTCCATTATGACAGACTCGGATATAAATGTGACTTGTTTGGAACACCAGGATCTTGCAGAAAGACAAAACTCTAGGTCAAAAACCTCTAAAACTAAACGAGACTCAGGGAGACCAGTCCGCCAGCGTCGTAGCTCAGGTGCAGCCAAGATAAAAAAGCTTGACAATCCAACCATTGACTCAACTACTGAATCAGATGCTGAAACTGTGGAGCAAGACACAGAGAGCCAAAAGTCCGCTGAATCAGCAGGTATGAGCTCAATGTACCATCATGAGTGCTCTGAGAAGAGGGAAACTGAGGAATTAATGAGCTGTGAGGAAGCAATTGAAGACTCTGTGAGCACTGAGAGGCTAGAACAGAAAACACCCAGCAATAAAAGACCTGGACAGGGTCAAAAGGTGCAGAAAAGTCCTCATGTAATGATCGATGTTGTAAAAGTAGACGAGATGGCTCTATCTGAGGGCATTGCATTAGAGAGCAACACTGGACCCGCAGAGTCTGATTTGGCACCCTGGCAGCAGGCCGACTTCAACATCGACGACATCCTTAAGCCTGTGGGGAAGAGTCGAGGTTCTGTGCGGCGCAGCTTGAGAAACCGAAGGAGCATGGACCTGCAGGCTGTGGGTCTGGCCTGGGTGGATCACACCTCACCAGAGCTGGTTAAAGCAAGTCGAAGGAGGACACGCGGAAGACTCAGTGGTGTTTCTGAACCATTCATCCCTCAACCCTCTGAAGAACTAACAACAAACTTGGGAGAGTAACTGGCCTCCATCCCCTGGTGTCAGTTTAAAGGAACACTTGATGGTTTTctagaaataggctcattttactagTAGCCTAGAGTTAAGCAGTTGAgtattaccattttttaatcaatttagctAATCTTTGGGTCTGGTTGTACCACTTTTAACCTagattagcataaatcattgaattggattagaccattttctttaaaaaagattTTGATTATTGTCCTATTTATTAGCCTGACTATTCATGCACTAAGACCACAGTGTAACTATGGAGTTTTATTGTACtacaaagtttcttgattattttGCTGGAATGAGAGCATAGTTACTAGTCATGTTGACCTAGAAAAAAGTTCTTGGCTTTGGTACATAACATATCTACATAATAGTCAAGTTTTAAATAGGAGATTTGTTTTGCTAAATgtttaatccgattcaatgatctatgctaaactaaatgaaaagtgctcctgccagattggatttaaaaatggtacaaatcaactgtttaactctagggaacTAAAATGAGCCACCAAAAAAAAAGTGCAGCTTTCTTTTAATGATCATATTATAAATGAACTTTTAATGCATCTTATTTTGCATATGAATTGTTTTAACTTTATATTGGTTCTTTACTGTTTTTAGTGTTTACAGATCACTCCTGACTCTTAAGAAGATTGCATAATTGTTAGATTACTTCTGCTCATTAAATCTTCTCTTGGATGAA
>TCONS_00060091
GCCTcctccatgtcctgaaacacctGGACCCTGTTTGTGGCTTTCAGCTCTCCATTCGACACAATCACACCAGAATGTCAGTCCATCCACCTGTCAGAGCTCATATCCGTGAGTCCTGACAGACCCTCGGGGGGGTTTTCTGCTCCGCGATCACTAAATGCTCCACATCTGattTCATATGCACTGGAGTCGAGCATGGATGTTACTGAAGCCATGGACAGCAGACCAGCACTTGCAGACTTGTCTCCCTCTCAGCAGAACACTGAAGCTGCGGATGTGGATTTCTCCAAACTCACCTCTTTACAGTTTGGGATATCAACAGACAGTTTCTTGCCGTCCTCTAAAAGTAAAGATAAGTCCAGAGTGGCTCAGCTGAAGGCTAGGAGGAGATCTACGATTGGGCTCCGGGGATCTCCAGAAACGAACTCGCTCATCTGCTTCAGAGCCAGACAAGCTGCAAAAACACCTCCCCGAACACCACAGCTTTTACAGGGGAGTCCTTTTCTTTCACGCTGTGACTCTCTGAAGAAAAAGATGGCTGCTTTCCAGTGTCTGATGGAGGACGATGAGGAGAAGGATGAATGGAAGAAAAATGAGGAGAATGAGAGTGCAAAAAGCACTTTGGCTAAGGATTCCCAGAACGGGAAGGAAAACACACCGACAACACCTAGCCCACCCATTTCAATGACGCCTCCTGCCTCTAAGAAACGCTGCTGGGCCCCACCAGGGGAGTGTGAGGACAAGATTACCAAGACGCCACTCCCCAACCCCACCGCTACAACACAGCAGGACCAAGGGGTTAAATGTACCGGGTCTCAAAGCCAGAGGCCTCTATCAGATGTGGATTCGGATGCAAAGAATGAGCTGCTTTCTTTACCCATGCTGTCAAAACCAGATATAAAGCCAGCAGatgaAAATGTGGTCTCCTCTGTATGCAAGAAGAAGCGTGTTCGTTTTGGGGCTCCACTATCTCCAGAGTTCTTTGACAAAGCTCTCCCTCCCAGTACACCACTGCAGAAAGGAGGCACCCCGAGGTGTCCTCCATCATCTACTGGTCCTAAACGCTCTCTGCTGAAGACACCTCAAAGATGTGAGCCCTCTCTTCCCCAACCTGACTTCAACAGCCCGCAAAGCAATGGAGCCTCTCCTGTCTTGGTTATTGACAGACGCAGCACCGGCCTTCTGTACAGCGATGAAGTATTTGAAGAGATTGAAAAGATCAGTTTTCCCATTATGGAGGAAGAGTCTCCCTCAAACCAGCTTCCAGGAAAATGGAAAGATGCACTCTTTGCTGAGGACACATGGAAGCCCCAGGCTGAAGAAACTGAAGTTATGAACGCTGCTTTTCAAGAGGAAGAGGATGTACCAGCAAATGTACAGACAGGGGATGAGCGGCCATGTACCACTGATGATCAGCCACTGGCTCTCTCTGTAGAGGCTGCAATCTCAGAAAAGACACTTTCATCCAACTCCAGCACTGAAGCAACTCGCTCTCGCGGTAGAAAAAGAAAGCAACCAGCCGAGAGTGAGCCTGAGAAAAGGAGAAGCTCACGTACAGCAGCAGTTTCTGCTTCAGGAAAGATGAAGAAAACGACAGGAGCAAAGAGAAAATTTGGAAATAAAGAGGTGGATCGTTCTCTCTATGGGAAAAGAGACTATGCCTCAAAAAACCCTCTGCTCAGCCCCATATTTGAGACAGCGTCTACCAGTTTCAACCTCACACCAACACAAAACCAATCAGGAAAAATAACAGATGGAGACCAAAATGGGATTCAGAAACCCAGTGTTCCCCAAAGTAAGACACTTCGTCCCGTGGTAGGTCTGGGAACTGCCAGTACATGGACCAATGAGTCACCAAGCTCCATTATGACAGACTCGGATATAAATGTGACTTGTTTGGAACACCAGGATCTTGCAGAAAGACAAAACTCTAGGTCAAAAACCTCTAAAACTAAACGAGACTCAGGGAGACCAGTCCGCCAGCGTCGTAGCTCAGGTGCAGCCAAGATAAAAAAGCTTGACAATCCAACCATTGACTCAACTACTGAATCAGATGCTGAAACTGTGGAGCAAGACACAGAGAGCCAAAAGTCCGCTGAATCAGCAGGTATGAGCTCAATGTACCATCATGAGTGCTCTGAGAAGAGGGAAACTGAGGAATTAATGAGCTGTGAGGAAGCAATTGAAGACTCTGTGAGCACTGAGAGGCTAGAACAGAAAACACCCAGCAATAAAAGACCTGGACAGGGTCAAAAGGTGCAGAAAAGTCCTCATGTAATGATCGATGTTGTAAAAGTAGACGAGATGGCTCTATCTGAGGGCATTGCATTAGAGAGCAACACTGGACCCGCAGAGTCTGATTTGGCACCCTGGCAGCAGGCCGACTTCAACATCGACGACATCCTTAAGCCTGTGGGGAAGAGTCGAGGTTCTGTGCGGCGCAGCTTGAGAAACCGAAGGAGCATGGACCTGCAGGCTGTGGGTCTGGCCTGGGTGGATCACACCTCACCAGAGCTGGTTAAAGCAAGTCGAAGGAGGACACGCGGAAGACTCAGTGGTGTTTCTGAACCATTCATCCCTCAACCCTCTGAAGAACTAACAACAAACTTGGGAGAGTAA
>TCONS_00060092
GTTACGGAGCAGCCACGTGCCGCACCGCAGACACAGCTGTGTGTGGATCAGCAGTCTAGATTGAGTGCATCATCAGTGTCTACACAGCTGGGTTTCTACTTCTGGAAGCATCTCTGAAGCATTATAGGTCACCAGTCAGAGCCGACTAGCAGAGGAGAGAGACCTGGAGattTCATATGCACTGGAGTCGAGCATGGATGTTACTGAAGCCATGGACAGCAGACCAGCACTTGCAGACTTGTCTCCCTCTCAGCAGAACACTGAAGCTGCGGATGTGGATTTCTCCAAACTCACCTCTTTACAGTTTGGGATATCAACAGACAGTTTCTTGCCGTCCTCTAAAAGTAAAGATAAGTCCAGAGTGGCTCAGCTGAAGGCTAGGAGGAGATCTACGATTGGGCTCCGGGGATCTCCAGAAACGAACTCGCTCATCTGCTTCAGAGCCAGACAAGCTGCAAAAACACCTCCCCGAACACCACAGCTTTTACAGGGGAGTCCTTTTCTTTCACGCTGTGACTCTCTGAAGAAAAAGATGGCTGCTTTCCAGTGTCTGATGGAGGACGATGAGGAGAAGGATGAATGGAAGAAAAATGAGGAGAATGAGAGTGCAAAAAGCACTTTGGCTAAGGATTCCCAGAACGGGAAGGAAAACACACCGACAACACCTAGCCCACCCATTTCAATGACGCCTCCTGCCTCTAAGAAACGCTGCTGGGCCCCACCAGGGGAGTGTGAGGACAAGATTACCAAGACGCCACTCCCCAACCCCACCGCTACAACACAGCAGGACCAAGGGGTTAAATGTACCGGGTCTCAAAGCCAGAGGCCTCTATCAGATGTGGATTCGGATGCAAAGAATGAGCTGCTTTCTTTACCCATGCTGTCAAAACCAGATATAAAGCCAGCAGatgaAAATGTGGTCTCCTCTGTATGCAAGAAGAAGCGTGTTCGTTTTGGGGCTCCACTATCTCCAGAGTTCTTTGACAAAGCTCTCCCTCCCAGTACACCACTGCAGAAAGGAGGCACCCCGAGGTGTCCTCCATCATCTACTGGTCCTAAACGCTCTCTGCTGAAGACACCTCAAAGATGTGAGCCCTCTCTTCCCCAACCTGACTTCAACAGCCCGCAAAGCAATGGAGCCTCTCCTGTCTTGGTTATTGACAGACGCAGCACCGGCCTTCTGTACAGCGATGAAGTATTTGAAGAGATTGAAAAGATCAGTTTTCCCATTATGGAGGAAGAGTCTCCCTCAAACCAGCTTCCAGGAAAATGGAAAGATGCACTCTTTGCTGAGGACACATGGAAGCCCCAGGCTGAAGAAACTGAAGTTATGAACGCTGCTTTTCAAGAGGAAGAGGATGTACCAGCAAATGTACAGACAGGGGATGAGCGGCCATGTACCACTGATGATCAGCCACTGGCTCTCTCTGCAGTAGAGGCTGCAATCTCAGAAAAGACACTTTCATCCAACTCCAGCACTGAAGCAACTCGCTCTCGCGGTAGAAAAAGAAAGCAACCAGCCGAGAGTGAGCCTGAGAAAAGGAGAAGCTCACGTACAGCAGCAGTTTCTGCTTCAGGAAAGATGAAGAAAACGACAGGAGCAAAGAGAAAATTTGGAAATAAAGAGGTGGATCGTTCTCTCTATGGGAAAAGAGACTATGCCTCAAAAAACCCTCTGCTCAGCCCCATATTTGAGACAGCGTCTACCAGTTTCAACCTCACACCAACACAAAACCAATCAGGAAAAATAACAGATGGAGACCAAAATGGGATTCAGAAACCCAGTGTTCCCCAAAGTAAGACACTTCGTCCCGTGGTAGGTCTGGGAACTGCCAGTACATGGACCAATGAGTCACCAAGCTCCATTATGACAGACTCGGATATAAATGTGACTTGTTTGGAACACCAGGATCTTGCAGAAAGACAAAACTCTAGGTCAAAAACCTCTAAAACTAAACGAGACTCAGGGAGACCAGTCCGCCAGCGTCGTAGCTCAGGTGCAGCCAAGATAAAAAAGCTTGACAATCCAACCATTGACTCAACTACTGAATCAGATGCTGAAACTGTGGAGCAAGACACAGAGAGCCAAAAGTCCGCTGAATCAGCAGGTATGAGCTCAATGTACCATCATGAGTGCTCTGAGAAGAGGGAAACTGAGGAATTAATGAGCTGTGAGGAAGCAATTGAAGACTCTGTGAGCACTGAGAGGCTAGAACAGAAAACACCCAGCAATAAAAGACCTGGACAGGGTCAAAAGGTGCAGAAAAGTCCTCATGTAATGATCGATGTTGTAAAAGTAGACGAGATGGCTCTATCTGAGGGCATTGCATTAGAGAGCAACACTGGACCCGCAGAGTCTGATTTGGCACCCTGGCAGCAGGCCGACTTCAACATCGACGACATCCTTAAGCCTGTGGGGAAGAGTCGAGGTTCTGTGCGGCGCAGCTTGAGAAACCGAAGGAGCATGGACCTGCAGGCTGTGGGTCTGGCCTGGGTGGATCACACCTCACCAGAGCTGGTTAAAGCAAGTCGAAGGAGGACACGCGGAAGACTCAGTGGTGTTTCTGAACCATTCATCCCTCAACCCTCTGAAGAACTAACAACAAACTTGGGAGAGTAA
>TCONS_00061528
GGAACTGCATCTCTGGAATTGTAGGCTACGTCACTTCCCACAATGATTAAACTGAGGAAACACAGGTGATATGTCACGCCATACACACACaccggtttttttttttttttaatgcacacacacacacacacacacacacacaccgttcaATGTAGCGTTTTTTTCTCACTTACGTCATCATGATTTACACATCGTGACGGTTATAATATGTGTTTTGTGCTGTGTTAAACGTGTGGAAGCTGCTAAATTACCTAGAGAAAGACTTATTAAACTGTAACAGgttaaatattttgacaaacgAACTTCAATAGTCTATTCTGCTTGATTTGTTTTGCTTAGtctttagtgttttttttcctgGTCTGACCGATTAGTACAGGCCAAAACATGACAACTATTAATCATTTTTAGACTTCATTTATGAACTATTACTGTATATTTGTGTTGTAATTTAGTATACTCCGTTGATAAACTCATCAATTACATGATATAGCCTAGTTCTGATTCCAGCCAAATAAACATTACAACATAGCCTACAGACTTTTCACAGAAAACGTAATAAATCAGACTAAAATCCAGACCAATATATGCATTTCTGAAGGATAAATCTAGCAAAGACAGTGGAAATATAATGAAACAATTCTCAAAAAAGGCTGAAGTGAGTAACATACTTGTTTTGAATATGATGTTAGCCTGTGAAGCACATTCAAACGAAATTTTCCAAGCTGGTAGATGCACTGCATGCCTGATTGAAGCACTTGAACACGGACAAAGGTTACGGAGCAGCCACGTGCCGCACCGCAGACACAGCTGTGTGTGGATCAGCAGTCTAGATTGAGTGCATCATCAGTGTCTACACAGCTGGGTTTCTACTTCTGGAAGCATCTCTGAAGCATTATAGGTCACCAGTCAGAGCCGACTAGCAGAGGAGAGAGACCTGGAGGTAATCCTGTGTTAAACACAATTACTGACTTTCCAAACTTTTAATACATGAGCATAAATGGATTGGGAGTGGTGAAAATTACCATTACTTATGTAACCCTGTTCAGTCCATATATACTgtggaaaatataaatattgcataTAGGGTCTGGATATCTGGAAATGGTCAAATAGTTGGAAAGAATCTGGTTTCAATTACGTTGACTGTCTG

Function

symbol description
si:ch211-244o22.2 Predicted to be involved in regulation of chromosome segregation and regulation of mitotic nuclear division. Predicted to act upstream of or within cell division and positive regulation of protein dephosphorylation. Predicted to be active in chromosome and nucleus. Is expressed in proliferative region. Orthologous to human CDCA2 (cell division cycle associated 2).

GO:

id name namespace
GO:0035307 positive regulation of protein dephosphorylation biological_process
GO:0051301 cell division biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3271 Predicted to be involved in regulation of chromosome segregation and regulation of mitotic nuclear division. Predicted to act upstream of or within cell division and positive regulation of protein dephosphorylation. Predicted to be active in chromosome and nucleus. Is expressed in proliferative region. Orthologous to human CDCA2 (cell division cycle associated 2).

Ensembl:

ensembl_id ENSDARG00000068759

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060090 False 3380 mRNA 0.44 13 14477282 14500622
TCONS_00060091 False 2619 mRNA 0.49 13 14478009 14509137
TCONS_00060092 False 2620 mRNA 0.49 13 14478009 14521500
TCONS_00061528 True 1153 lncRNA 0.38 2 14521122 14522712

Neighbor

gene id symbol gene type direction distance location
XLOC_030908 kat6a coding downstream 34158 14394323 ~ 14443124 (-)
XLOC_030907 ap3m2 coding downstream 86837 14375108 ~ 14390445 (-)
XLOC_030906 tet3 coding downstream 103620 14306475 ~ 14373662 (-)
XLOC_030905 CR388049.1 coding downstream 232002 14245149 ~ 14245280 (-)
XLOC_030904 npffr1l2 coding downstream 238204 14165567 ~ 14239078 (-)
XLOC_030910 sema4c coding upstream 6389 14529101 ~ 14648433 (-)
XLOC_030911 NA coding upstream 258130 14780842 ~ 15176098 (-)
XLOC_030912 NA coding upstream 476910 14999622 ~ 14999996 (-)
XLOC_030913 CR936518.1 coding upstream 664111 15186823 ~ 15215784 (-)
XLOC_030914 gnb1l coding upstream 699299 15222011 ~ 15283509 (-)
XLOC_030896 AL954191.1 non-coding downstream 944294 13532874 ~ 13532988 (-)
XLOC_030893 NA non-coding downstream 1170577 13277241 ~ 13306705 (-)
XLOC_030888 NA non-coding downstream 1640675 12835526 ~ 12836607 (-)
XLOC_030881 BX276096.2 non-coding downstream 2110957 12366209 ~ 12366325 (-)
XLOC_030915 NA non-coding upstream 784827 15307539 ~ 15310108 (-)
XLOC_030920 BX649391.1 non-coding upstream 1211813 15734525 ~ 15734580 (-)

Expression


Co-expression Network