Fish Transcriptome and Expression Database

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model fish

XLOC_031221 (BX530075.3)

Basic Information

Item	Value
gene id	XLOC_031221
gene name	BX530075.3
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007116.7
NCBI id	CM002889.2
chromosome length	72500376
location	34833978 ~ 34834093 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060636
atcggcagctagctctctgcaactctcacgtggtcacccactgaagccaagcagggctgtgcccggtcagtacctggatgggagaccacataggaaaagctggattgctgccggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000108823

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00060636	True	116	rRNA	0.58	1	34833978	34834093

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_031219	hexb	coding	downstream	217379	34600714 ~ 34616599 (-)
XLOC_031218	BX296533.1	coding	downstream	595955	34237907 ~ 34238023 (-)
XLOC_031217	fibcd1	coding	downstream	648481	34066591 ~ 34185497 (-)
XLOC_031216	zgc:63972	coding	downstream	874110	33940215 ~ 33959868 (-)
XLOC_031215	si:dkeyp-72a4.1	coding	downstream	898582	33879807 ~ 33935396 (-)
XLOC_031222	btf3	coding	upstream	153355	34987448 ~ 34997630 (-)
XLOC_031223	tmem174	coding	upstream	270992	35105085 ~ 35108893 (-)
XLOC_031224	fcho2	coding	upstream	289569	35123662 ~ 35201482 (-)
XLOC_031225	tnpo1	coding	upstream	367970	35202063 ~ 35252761 (-)
XLOC_031226	ptcd2	coding	upstream	419364	35253457 ~ 35264517 (-)
XLOC_031210	NA	non-coding	downstream	1547320	33286587 ~ 33286658 (-)
XLOC_031209	CU019641.3	non-coding	downstream	1548381	33285526 ~ 33285597 (-)
XLOC_031200	NA	non-coding	downstream	1906059	32922656 ~ 32927919 (-)
XLOC_031198	NA	non-coding	downstream	1948104	32885179 ~ 32885874 (-)
XLOC_031229	NA	non-coding	upstream	689316	35523409 ~ 35540980 (-)
XLOC_031231	BX005476.1	non-coding	upstream	989325	35823418 ~ 35823548 (-)
XLOC_031238	NA	non-coding	upstream	1987781	36821874 ~ 36829073 (-)
XLOC_031240	NA	non-coding	upstream	2069053	36903146 ~ 36907379 (-)
XLOC_031242	BX927323.1	non-coding	upstream	2100475	36934568 ~ 36943975 (-)

Expression

Co-expression Network