XLOC_031327 (cenpv)


Basic Information

Item Value
gene id XLOC_031327
gene name cenpv
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 42022826 ~ 42071619 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060811
TGGAGCACAAttattatttcaggtTTCATTATGATTAATATTCAGTCATACAGTATTAGTTTAAATTTTTCCATGAGTGGTAGGGGAAGAACAACTCACagATTACATATTAGCATATATTACGTTATAGattatttaatgtcatctgGGCGATTAGAAGAGATATGCAGGGTGTTTAGTTTAGccaattacattattattactgtatatttgactataATAGAGTTGAGTGTGAAAtggatgtatttgttaaatttttgttttattttatgccatgatgacaccaaaataaaaaaaaagtcttttttgtgttattttggCTCTCTGTTATGGACAAGAGtattatatttattaattaataggtacgtatttattaacaatacacaaaaaactaaaagaacaaccaaaaatgttatggtttattag
>TCONS_00060812
AATGTTCAACAGGACAGCATGACTTGACACTTTAAACCGGTTTgcctgaagaaaataaacaactgGTTTCAACATTACATATTAGCATATATTACGTTATAGGTACTAAATGGCGCACGTAATTAAAGATGAAAGGTAGGTCTTGTGAAACCGATGGTCTTGTGAAACACACCGGGGGTTGTCACTGCGGCGCGGTGCGTTTTGAGGTGTGGAGCGCCCCAGATTTACACGTGTTCAATTGCAATTGCAGCATTTGCACAAAGAAACAGAATCGTCACTTCATTGTGCCAAAATCCCAGTTCACCTTGCTGCAGGGATCAGACAACATAATCACATACACATTTAACACACACATGGCCAAACACACATTCTGCAAAACctgcggccctctagtaACTGAGTTTGCCACCTGTGTGTTAGATTTTCAGCTAGAGGACATAACATGTATTGTCCTGCTTAACACATGTTAATTGATGCACTATTAACCCAAAATCACAGTTTGGGTTCGGGTATTGGTTTAAGCTCCTAATGTATATGTTAGTGCACTCCTA
>TCONS_00060813
aacaactgGTTTCAACATTACATATTAGCATATATTACGTTATAGGTACTAAATGGCGCACGTAATTAAAGATGAAAGGTAGGTCTTGTGAAACCGATGGTCTTGTGAAACACACCGGGGGTTGTCACTGCGGCGCGGTGCGTTTTGAGGTGTGGAGCGCCCCAGATTTACACGTGTTCAATTGCAATTGCAGCATTTGCACAAAGAAACAGAATCGTCACTTCATTGTGCCAAAATCCCAGTTCACCTTGCTGCAGGGATCAGACAACATAATCACATACACATTTAACACACACATGGCCAAACACACATTCTGCAAAACGTGCGGCGTCCAGAGTTTCTACACTCCACGCTCCAACCCAGATGGGTTTGGTGTGGCACCTCATTGTTTGGACCCTGGAACGGTTAACAGTGTGACTGTTGAGGATTTCTGTGGACAGAACTGGGAGGAAAGTATGCAGGAGCATAAGACtataaaaaacatgtcaaaaccaACAACACAGAACACATAACTCTCTGTATCCAGTGGTCATTTGATGTGTTAGACcacaaa
>TCONS_00060814
GAAACCGATGGTCTTGTGAAACACACCGGGGGTTGTCACTGCGGCGCGGTGCGTTTTGAGGTGTGGAGCGCCCCAGATTTACACGTGTTCAATTGCAATTGCAGCATTTGCACAAAGAAACAGAATCGTCACTTCATTGTGCCAAAATCCCAGTTCACCTTGCTGCAGGGATCAGACAACATAATCACATACACATTTAACACACACATGGCCAAACACACATTCTGCAAAACGTGCGGCGTCCAGAGTTTCTACACTCCACGCTCCAACCCAGATGGGTTTGGTGTGGCACCTCATTGTTTGGACCCTGGAACGGTTAACAGTGTGACTGTTGAGGATTTCTGTGGACAGAACTGGGAGGAAAGTATGCAGGAGCATAAGACtataaaaaacatgtcaaaaccaACAACACAGAACACATAA

Function

symbol description
cenpv Predicted to enable carbon-sulfur lyase activity and metal ion binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in head; motor neurons; muscle; retinal outer nuclear layer; and trunk musculature. Orthologous to human CENPV (centromere protein V).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016846 carbon-sulfur lyase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060526-76 Predicted to enable carbon-sulfur lyase activity and metal ion binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in head; motor neurons; muscle; retinal outer nuclear layer; and trunk musculature. Orthologous to human CENPV (centromere protein V).

Ensembl:

ensembl_id ENSDARG00000092285

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060811 False 426 mRNA 0.27 21 42022826 42071619
TCONS_00060812 False 551 mRNA 0.42 5 42054362 42060178
TCONS_00060813 False 553 mRNA 0.44 5 42054638 42060121
TCONS_00060814 True 423 mRNA 0.47 4 42054679 42059869

Neighbor

gene id symbol gene type direction distance location
XLOC_031326 ncor1 coding downstream 26412 41878252 ~ 41996414 (-)
XLOC_031325 si:dkey-65b12.10 coding downstream 146992 41874958 ~ 41875834 (-)
XLOC_031324 si:dkey-65b12.12 coding downstream 162270 41857450 ~ 41860556 (-)
XLOC_031323 CR931763.1 coding downstream 167432 41853438 ~ 41855394 (-)
XLOC_031322 si:dkey-65b12.6 coding downstream 177710 41826958 ~ 41845116 (-)
XLOC_031329 cxcl11.5 coding upstream 10265 42081884 ~ 42083363 (-)
XLOC_031330 NA coding upstream 13385 42085004 ~ 42091969 (-)
XLOC_031331 emc6 coding upstream 51191 42122810 ~ 42123794 (-)
XLOC_031332 fam222ba coding upstream 92460 42164079 ~ 42180205 (-)
XLOC_031333 BX548073.5 coding upstream 180590 42252209 ~ 42253313 (-)
XLOC_031314 NA non-coding downstream 548566 41464093 ~ 41474260 (-)
XLOC_031312 CR753861.2 non-coding downstream 839574 41183136 ~ 41183252 (-)
XLOC_031309 BX470118.1 non-coding downstream 1018564 41004148 ~ 41004262 (-)
XLOC_031306 NA non-coding downstream 1192993 40810788 ~ 40829833 (-)
XLOC_031334 NA non-coding upstream 199416 42271035 ~ 42273074 (-)
XLOC_031335 BX548073.4 non-coding upstream 229505 42301124 ~ 42306483 (-)
XLOC_031336 BX548073.2 non-coding upstream 261552 42333171 ~ 42334595 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000039_04244908_04247540 CENPV coding CI01000039 null 4244504 ~ 4247540 (+)
bowfin (Amia calva) G44034 ddx5,kpna2,LOC102776273,LOC103469782,LOC108432045,LOC108261381,LOC100304957 misc CM030125.1 CM030125.1 29926383 ~ 30028230 (-)