Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_003138 |
| gene name | mir196c |
| gene type | non-coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007122.7 |
| NCBI id | CM002895.2 |
| chromosome length | 45484837 |
| location | 2190621 ~ 2190730 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| mir196c | Predicted to enable translation repressor activity, mRNA regulatory element binding. Predicted to act upstream of or within mRNA cleavage involved in gene silencing by miRNA and miRNA mediated inhibition of translation. Is expressed in neural tube and tail bud. Human ortholog(s) of this gene implicated in hepatocellular carcinoma. Orthologous to human MIR196A2 (microRNA 196a-2). |
| id | name | namespace |
|---|---|---|
| GO:0035278 | miRNA mediated inhibition of translation | biological_process |
| GO:0035279 | mRNA cleavage involved in gene silencing by miRNA | biological_process |
| GO:0005575 | cellular_component | cellular_component |
| GO:0000900 | translation repressor activity, mRNA regulatory element binding | molecular_function |
| id | description |
|---|---|
| ko03100 | Non-coding RNAs |
| id | description |
|---|---|
| ZDB-MIRNAG-050712-1 | Predicted to enable translation repressor activity, mRNA regulatory element binding. Predicted to act upstream of or within mRNA cleavage involved in gene silencing by miRNA and miRNA mediated inhibition of translation. Is expressed in neural tube and tail bud. Human ortholog(s) of this gene implicated in hepatocellular carcinoma. Orthologous to human MIR196A2 (microRNA 196a-2). |
| ensembl_id | ENSDARG00000106838 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00006199 | True | 110 | miRNA | 0.50 | 1 | 2190621 | 2190730 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_003137 | hoxc11b | coding | upstream | 5447 | 2180072 ~ 2185174 (+) |
| XLOC_003136 | hoxc12b | coding | upstream | 15588 | 2172335 ~ 2175033 (+) |
| XLOC_003135 | hoxc13b | coding | upstream | 27800 | 2156430 ~ 2162821 (+) |
| XLOC_003134 | rargb | coding | upstream | 94152 | 2089461 ~ 2096469 (+) |
| XLOC_003132 | NA | coding | upstream | 193211 | 1935684 ~ 1997410 (+) |
| XLOC_003139 | NA | coding | downstream | 7800 | 2198530 ~ 2205798 (+) |
| XLOC_003140 | NA | coding | downstream | 117479 | 2308209 ~ 2320355 (+) |
| XLOC_003141 | igfbp6a | coding | downstream | 200739 | 2391469 ~ 2397974 (+) |
| XLOC_003142 | pip4k2cb | coding | downstream | 208113 | 2398843 ~ 2413107 (+) |
| XLOC_003143 | ube2v1 | coding | downstream | 225334 | 2416064 ~ 2429303 (+) |
| XLOC_003250 | BX324177.11 | misc | downstream | 9155073 | 11345803 ~ 11346099 (+) |
| XLOC_003255 | BX324177.14 | misc | downstream | 9182156 | 11372886 ~ 11373182 (+) |
| XLOC_003257 | BX324177.13 | misc | downstream | 9195632 | 11386362 ~ 11386658 (+) |
| XLOC_003260 | BX324177.2 | misc | downstream | 9227303 | 11418033 ~ 11418323 (+) |
| XLOC_003262 | BX324177.15 | misc | downstream | 9238663 | 11429393 ~ 11429689 (+) |
| XLOC_003133 | NA | non-coding | upstream | 238027 | 1951631 ~ 1952594 (+) |
| XLOC_003126 | AL935272.1 | non-coding | upstream | 644390 | 1546117 ~ 1546231 (+) |
| XLOC_003118 | FQ311892.1 | non-coding | upstream | 1459698 | 730807 ~ 730923 (+) |
| XLOC_003112 | NA | non-coding | upstream | 1646427 | 543348 ~ 544194 (+) |
| XLOC_003149 | FQ790208.1 | non-coding | downstream | 424340 | 2615070 ~ 2616023 (+) |
| XLOC_003156 | CT583672.1 | non-coding | downstream | 636823 | 2827553 ~ 2828675 (+) |
| XLOC_003159 | dre-mir-724 | non-coding | downstream | 985956 | 3176686 ~ 3176770 (+) |
