XLOC_003143 (ube2v1)


Basic Information

Item Value
gene id XLOC_003143
gene name ube2v1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 2416064 ~ 2429303 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006205
AAAATGATGACTAATATCAGCGCACTATATTGAACTTCAATTTCCAGGTTCACCGATTATTTCATGCATAATTCATGAGGCGATTGTTCACTGTTGGCGCGTCCCCGCTGCTGAGCAACAAGATGGCGGCCGCCGCCGGATCAGGCGTGAAAGTCCCCCGTAACTTCCGGCTGCTGGAGGAGCTTGAGGAGGGTCAGAAGGGTGTTGGAGACGGGACAGTGAGCTGGGGTCTGGAAGACGATGAGGACATGACCCTCACACGCTGGAGAGGAATGATCATCGGGCCCCCGAGGACCATCTATGAGAACAGGATGTACAGCCTCAGAGTAGAATGTGGACCAAGATATCCAGAAACGCCCCCTTTTGTCCGTTTTGTGACGAAGATCAACTTGAATGGAGTGCATAACTCCAATGGTGTGGTTGACATGCGCGCTGTATCCTCATTGGCCAAGTGGCAGAACTCGTACAGCATCCGCGTGGTCCTGCAGGAGCTGCGACGACTGATGATGTGCAAAGAAAACATGAAGCTGCCGCAGCCTCCTGAAGGACAGATCTACAGCAACTGAGCTTCttctcctccctctctctctttctctctctctctctctttctttctctctctctacctTCATCCACAACAAAGTCACACACGCAAGGCTGAgcattcctcctcctcctcctctttctggACTCATGAGATATCCTCCGTTCTCCTCTGTTCCTGACACTCCCCCACGTGCTGCAGCAGCCAATGAGCAGTCCTGCCTCCGGGAGCTCCCATTGGACAGAAACCATGGATGTAGTGGTGTGCACAGCAGAATACTGTACATCATtctaatctctttttttttaaatgtttatttgttatacatgcaaaattgtaaaaataacaaatgatCTTATTGAGTGTAATCTGTGTGCCCTCATTTGAGAATTAGTTCATGCAAGTGTAAATGAATTTGTGCCATCGTGTAACATGCTGTGTGGTGGGAATATTTAGATTCATATTTCTTGTTTCCTTTCATTTTTcctattgatgatgatgatgatactgcAGTCAGCAGTTCAGACTGTTTAGTCTCTGGCCTGAGCATTTTAGagttgctcattttatttttaagcagtCTTTTTCAGTTTTGAAGGTTTTCTGAAATTGCTTTACATCCAAGATCAAAACACTTTAATTTCCTC

Function

symbol description
ube2v1 Acts upstream of or within protein K63-linked ubiquitination. Part of UBC13-UEV1A complex. Orthologous to human UBE2V1 (ubiquitin conjugating enzyme E2 V1).

GO:

id name namespace
GO:0006301 postreplication repair biological_process
GO:0070534 protein K63-linked ubiquitination biological_process
GO:0000209 protein polyubiquitination biological_process
GO:0035370 UBC13-UEV1A complex cellular_component
GO:0005634 nucleus cellular_component
GO:0061631 ubiquitin conjugating enzyme activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-051030-102 Acts upstream of or within protein K63-linked ubiquitination. Part of UBC13-UEV1A complex. Orthologous to human UBE2V1 (ubiquitin conjugating enzyme E2 V1).

Ensembl:

ensembl_id ENSDARG00000041875

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006205 True 1191 mRNA 0.46 4 2416064 2429303

Neighbor

gene id symbol gene type direction distance location
XLOC_003142 pip4k2cb coding upstream 2957 2398843 ~ 2413107 (+)
XLOC_003141 igfbp6a coding upstream 18090 2391469 ~ 2397974 (+)
XLOC_003140 NA coding upstream 95709 2308209 ~ 2320355 (+)
XLOC_003139 NA coding upstream 210266 2198530 ~ 2205798 (+)
XLOC_003138 mir196c coding upstream 225334 2190621 ~ 2190730 (+)
XLOC_003144 csnk2a4 coding downstream 4959 2434262 ~ 2446346 (+)
XLOC_003145 tp53rk coding downstream 28961 2458264 ~ 2466879 (+)
XLOC_003146 NABP2 coding downstream 77213 2506516 ~ 2513093 (+)
XLOC_003147 zgc:113184 coding downstream 125553 2554856 ~ 2566692 (+)
XLOC_003148 dnajc14 coding downstream 167364 2596667 ~ 2609824 (+)
XLOC_003250 BX324177.11 misc downstream 8916500 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 8943583 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 8957059 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 8988730 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 9000090 11429393 ~ 11429689 (+)
XLOC_003132 NA non-coding upstream 418654 1935684 ~ 1997410 (+)
XLOC_003149 FQ790208.1 non-coding downstream 185767 2615070 ~ 2616023 (+)
XLOC_003156 CT583672.1 non-coding downstream 398250 2827553 ~ 2828675 (+)
XLOC_003159 dre-mir-724 non-coding downstream 747383 3176686 ~ 3176770 (+)
XLOC_003160 NA non-coding downstream 774184 3203487 ~ 3206698 (+)
XLOC_003164 NA non-coding downstream 901810 3331113 ~ 3333714 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000057_01510783_01522965 UBE2V1, UBE2V1.L, UB2V1 coding CI01000057 null 1510783 ~ 1523768 (+)