XLOC_003150 (si:ch211-160o17.3)


Basic Information

Item Value
gene id XLOC_003150
gene name si:ch211-160o17.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 2633743 ~ 2649496 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006214
GGGCCCTGCAGGTTTTAAAAGACGCGCAGTTTGTTGACAGTAGTGAACGCAGATCCTGCTTCGGTGAAAATGGCCCACTATCTGGACGATTTTATTGCAGATTtcaaaaaacaaatgctacaAGATGAAGAAGAGGACTATGATGATCTGCAACCTGACATGGCTGAGTTCAGCATGAGCACAGCAGCAGAAGCTCTGAGAAAGGAACTTTGGGATAATTTAGAGCAGCAGTTCGCAAAAATGCAGCAGATGAAAAAAAGACTCGGTGAAGAGGAAACCAGGTTCCATCGGATATTCTTCCTCCTGCAGGAGAACGAACAGGAGCTGGAGAATCTGCTCATCAGCAACGCTAAACTGCGAGAAGAAGTAAAGAACAACCCTGAAGAAAAGGAGCGTCGTGAGTACTACAGGAGGAAACTTTGGATTAACGACGTCTATGACACATGTATAAGTGCGGCAGGAATGCCAGCGAACACACGGGACCCTCTGGAGCAGTTACAAATGATTAAAATCTTCCTTCAAATAATCAGCGATGTGAAAATGAAAACTGATGAAGAAGACTCTTAAAATCtaagcaaataaaataatcatctgaA
>TCONS_00006215
GCAGATCCTGCTTCGGTGAAAATGGCCCACTATCTGGACGATTTTATTGCAGATTtcaaaaaacaaatgctacaGAGAACGAACAGGAGCTGGAGAATCTGCTCATCAGCAACGCTAAACTGCGAGAAGAAGTAAAGAACAACCCTGAAGAAAAGGAGCGTCGTGAGTACTACAGGAGGAAACTTTGGATTAACGACGTCTATGACACATGTATAAGTGCGGCAGGAATGCCAGCGAACACACGGGACCCTCTGGAGCAGTTACAAATGTGTACGAGTTTTGTTCAAGTTTTCTGATACTTCGTATATTTATGGAtcaaaaaatacaatttcaaCAGCCAAATCCCGTGACATGTGATGCTGAAGACATGTACAAATACCCGCAAAAACCACCACCTCATAGGATGCCCAAAGGCACGCTGGACAGTGTCATGGGTGTAGTGGAGAGAAGCGCAGTTTTCACCCGTCAGAGGGACATCAGGCTGCCACCAATCCCTGGCATTAGTCATCATCTTGGGCCACCACCCGAGGTCCACCCCAGCCTCGATGCCCAGACACAGACTGACATTTATAAACGAATGAGAAGAACCATTAGAGCCACCTTATCAGATAAAGCAAAGAAAATTTTACAAAGTCGCTGTGAACAGCAGAAAAAGAGCAGCATGGGTGTGAGAAAGAAAGCCACGGTCTCCAGCCGACCAAAGACTGTCAAGCTTCCACCTAGCTCTGCTCCACCAGTCTCTGTTCCACCTGAACCTGTCCCACTTACCCCTGTCCCACCTGGCCCTTCCACAGCTACAGGACTGCCTCCACATCCAGCAGCTCAGATGAGCGAGACTGCGGTGGACCGAAGCCTCGACACTGGGAAAGACCTTCCAGTCGTCGAGTCCTCGAAGAAAAAGAGAAACAGACCCCCAAAAGCCTCAAGGAGAGATGAAGACATGGGATTTGAATTGATGGTCATTTCTGAGATGTGGTGGGAAATCGCAGACGAAATCAGGGAAATTGAGGCTAAAAAGGAAAACATCGTGAAGAAGGCAAACTGCTTGGAAAAAAGGTTTCATGCCAGTGTTCGCCTCATAGCAGAACAGCAGGAGGAAGAAAGGGATCTTAAGCAAATATGGCAGAGTAAAAACAGCGGTTGCCAGATACCTGTTTGGAGGATGAAAAATGAGCAGGTGGCGGAGGCCATCGCAGAGATCCACGAAAGCTTCGGTGAGATCAGCTGTCCGTCTATTCCGTATATAATGCAAGAAGACATTGATCAGTGGTGTTCAGACGCCAGCAGGTTCGTTAGAAACACAAGGCTCCAAAAGACAATACAGAGTGGCTTTCACCACATCGAGTACAGTAAAAGGCAGCAGAAAAACGCTGAGAGGCAAGCCCGGCGGAGGCAGATCCGACATGAGATCGCTCTCGCTCCTCCTGTAAAAATAACTGGAAGAAAGCTGATCCCACGCAGCCAGCCTCCGAAGGTTGTGGAGAAAGTAGTGAAGGTTAAGGAAGAGAagaatttactgtattttttaaacaattaaccGGACTGAATTCTCACGTATTGAAGAAGAAAATGCCTCCGTCTTTCAGTGAAGAATGAGGaaatcctcctcctcttccttcaCTGAACGACCAACTTCCAAAATCCGA
>TCONS_00006216
acatcccggTTTCGTCACAACGTTAACGGCCGCGCGCTGATCTGAATAAGCTCGCATATCGAATGTTcactagtttgttttgtttctacttCATTCAGTGTACGAGTTTTGTTCAAGTTTTCTGATACTTCGTATATTTATGGAtcaaaaaatacaatttcaaCAGCCAAATCCCGTGACATGTGATGCTGAAGACATGTACAAATACCCGCAAAAACCACCACCTCATAGGATGCCCAAAGGCACGCTGGACAGTGTCATGGGTGTAGTGGAGAGAAGCGCAGTTTTCACCCGTCAGAGGGACATCAGGCTGCCACCAATCCCTGGCATTAGTCATCATCTTGGGCCACCACCCGAGGTCCACCCCAGCCTCGATGCCCAGACACAGACTGACATTTATAAACGAATGAGAAGAACCATTAGAGCCACCTTATCAGATAAAGCAAAGAAAATTTTACAAAGTCGCTGTGAACAGCAGAAAAAGAGCAGCATGGGTGTGAGAAAGAAAGCCACGGTCTCCAGCCGACCAAAGACTGTCAAGCTTCCACCTAGCTCTGCTCCACCAGTCTCTGTTCCACCTGAACCTGTCCCACTTACCCCTGTCCCACCTGGCCCTTCCACAGCTACAGGACTGCCTCCACATCCAGCAGCTCAGATGAGCGAGACTGCGGTGGACCGAAGCCTCGACACTGGGAAAGACCTTCCAGTCGTCGAGTCCTCGAAGAAAAAGAGAAACAGACCCCCAAAAGCCTCAAGGAGAGATGAAGACATGGGATTTGAATTGATGGTCATTTCTGAGATGTGGTGGGAAATCGCAGACGAAATCAGGGAAATTGAGGCTAAAAAGGAAAACATCGTGAAGAAGGCAAACTGCTTGGAAAAAAGGTTTCATGCCAGTGTTCGCCTCATAGCAGAACAGCAGGAGGAAGAAAGGGATCTTAAGCAAATATGGCAGAGTAAAAACAGCGGTTGCCAGATACCTGTTTGGAGGATGAAAAATGAGCAGGTGGCGGAGGCCATCGCAGAGATCCACGAAAGCTTCGGTGAGATCAGCTGTCCGTCTATTCCGTATATAATGCAAGAAGACATTGATCAGTGGTGTTCAGACGCCAGCAGGTTCGTTAGAAACACAAGGCTCCAAAAGACAATACAGAGTGGCTTTCACCACATCGAGTACAGTAAAAGGCAGCAGAAAAACGCTGAGAGGCAAGCCCGGCGGAGGCAGATCCGACATGAGATCGCTCTCGCTCCTCCTGTAAAAATAACTGGAAGAAAGCTGATCCCACGCAGCCAGCCTCCGAAGGTTGTGGAGAAAGTAGTGAAGGTTAAGGAAGAGAagaatttactgtattttttaaacaattaaccGGACTGAATTCTCACGTATTGAAGAAGAAAATGCCTCCGTCTTTCAGTGAAGAATGAGGaaatcctcctcctcttccttcaCTGAACGACCAACTTCCAAAATCCGAAAATAGAAAACACAGCATACACAGCATGATGTTTTTGTAATGTCTTTCAATTCTaaagacattttaatacaattatgttaataaacatttcttttaaaggCA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-081022-42 No description available

Ensembl:

ensembl_id ENSDARG00000076652 ENSDARG00000105387 ENSDARG00000105440

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006214 False 596 mRNA 0.43 5 2633743 2641308
TCONS_00006215 False 1646 nonsense_mediated_decay 0.47 11 2633791 2649394
TCONS_00006216 True 1577 mRNA 0.46 8 2642013 2649496

Neighbor

gene id symbol gene type direction distance location
XLOC_003149 FQ790208.1 coding upstream 17720 2615070 ~ 2616023 (+)
XLOC_003148 dnajc14 coding upstream 23919 2596667 ~ 2609824 (+)
XLOC_003147 zgc:113184 coding upstream 67051 2554856 ~ 2566692 (+)
XLOC_003146 NABP2 coding upstream 120650 2506516 ~ 2513093 (+)
XLOC_003145 tp53rk coding upstream 166864 2458264 ~ 2466879 (+)
XLOC_003151 si:ch211-160o17.4 coding downstream 168 2649664 ~ 2684595 (+)
XLOC_003152 b3galt6 coding downstream 35616 2685112 ~ 2690933 (+)
XLOC_003153 tmem167b coding downstream 50455 2699951 ~ 2707028 (+)
XLOC_003154 mapk14b coding downstream 61034 2710530 ~ 2760373 (+)
XLOC_003155 srpk1b coding downstream 113672 2763168 ~ 2826562 (+)
XLOC_003250 BX324177.11 misc downstream 8696307 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 8723390 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 8736866 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 8768537 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 8779897 11429393 ~ 11429689 (+)
XLOC_003140 NA non-coding upstream 313388 2308209 ~ 2320355 (+)
XLOC_003139 NA non-coding upstream 427945 2198530 ~ 2205798 (+)
XLOC_003138 mir196c non-coding upstream 443013 2190621 ~ 2190730 (+)
XLOC_003132 NA non-coding upstream 636333 1935684 ~ 1997410 (+)
XLOC_003156 CT583672.1 non-coding downstream 178057 2827553 ~ 2828675 (+)
XLOC_003159 dre-mir-724 non-coding downstream 527190 3176686 ~ 3176770 (+)
XLOC_003160 NA non-coding downstream 553991 3203487 ~ 3206698 (+)
XLOC_003164 NA non-coding downstream 681617 3331113 ~ 3333714 (+)
XLOC_003169 NA non-coding downstream 966254 3615750 ~ 3735803 (+)

Expression


Co-expression Network