XLOC_003153 (tmem167b)


Basic Information

Item Value
gene id XLOC_003153
gene name tmem167b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 2699951 ~ 2707028 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006221
GTTGGTTTCCCATAATGCCGTGGTACCGGAAGCGTTTCGGAAGTCTGCACTGTGTATGCGGAACtgatgaagacagtaaataaaacCCCACTGGCAGCTTGAACTTCATCTCAACGCACAATTGAACAGCAACGAAGATGACAAACGTCTACTCTTTCGATGGCATTCTTGTGTTTGGGCTTCTGTTCATTTGCACGTGTGCATACCTGAAGAAGGTTCCTCGTCTCAACAGCTGGCTCCTGTCGGAGAAGAAAGGTGTGTGGGGAGTCTTTTATAAAGCTGCGGTGATCGGCACACGGCTGCACGTCGTTGTGGCGGCGTCCTGTTTGTGTATGGCTTTTTACCTCATATTTCTCAAATGACTTGGATGAATCAGTACTGGACTGTGAGATGCTGATGGACATGCGGTGCGGTCAGGAGTCGCCAGCAGATGGGGACGATGCACAGAATCCCTCCTCCAGCTGCGGTTTAGCCCTCTTTCAAGATCTGCTTTCCACTTTTGTAAATGTGTAACTTAAAAATAGAGTCTGAAGGGGAATTGGGTCTCAGATCAGGGTCATTTCTGCTGGATGTGGAGCATCTGCTTATGGACTTCACACATGGTTTGTGGTGTCGTTCTCTCAAACATGCACATTTATGATTGAGCTTATGGGATAATGAAGGCAGAATCAAAGTTAATTTGTACAGAATAACATTTTATAGCAGTGTCTTTTCATTAGTTAGTTTTTATCATAAATAGCTTACATCactggtgtcaaactcagttcctggagggccgcagctatCACAGTTTAGTGATAAACACACATAATCAAaccaattgagtccttcaggATTGTTTGAAATGTacaggtgagtgtgttggagCATGGTTGGacactaaactgtgcagggcagcagtttgacacccctggcttacGTTATCACttaaagcagggatgtcaaactcaattcctagagggccgcagctctgcacagtttagtgccaaccctaattaaacacacctgatcaaactaatttaatccttcaggcttgtttgaaacctgcaggtaagtgtgttggagcagggttggactaaactgtgcagggctgcggccctctaggaattgagtttgacatccctgacttaaaggggcagttcacacacaaattaaaatggtcatcatttactcatgcttCTAAATCTGCTTGATTtcgtttttctgttgaacacaatagaagataatttgaagaatgttacaaATTGGTAGCCGTTAACATCCATGGTATCTCTTTATCCTACTATTAATGCCAATGACTTCCAGTCTTCTTAAATATATACCTTTTTATTGGTTCAACAACACAAGATAAACGTTGTAAAGGTTTGAAATCactcaagagtgagtaaatgtcaatgtttgtgtgaactatccctttaaattaccCCAGATGTTTATAAGGAAACATGATATAGTTTCATGCAGAGTGAAAAGGAAACCTAAATGTGATTTTTAGTTTAGGATATAGCTCAAAACTACACATGTATGAACTTATTTTCTTGATGAGACATATTCAGTAGTATATTTGAAAGTAAATCATCCTGGCACACACCATGTAGTTGCATAGCATGTCTATTCATATCAGTTTGATCAATACACAGCAAAGTTTATTAACAAAAAtcactttttcttttaaaaaaacatgcgTCTTACAGTAAATATAGATGATAATGGTTCATTCCTGAGGTTATGGCTCCGGAATATCAAGAGGATGGTatgatattaatttaaaaatcatacttgcAATAGAGAAACACACTACAGATTGAATCCTACACATTTATATGACTTTTTTCTGATTGTAAACACTCTGATGATTCTGTATGTTTCAGCACCATGATGCTCAGTGTGTCAACACTTTACACCGCACAAAAATACACAAGCCAAGATGTTCTGTAGTATTTATGCCTTTAGTTGTGTGTGTTACAGCAGCCTATCGTCGTTTCCTTACGTATTTAAACTTGGTTCAGCTTGTAAATATCTGCAGTCGTGCTCTGAAACTGCTAGCAAGTGATAGTTATTGGGTGTTTCATATTTGTAGACATGTGGACTCTAATAAATATTTGATATCAAACCCTATGCAACGAAATA

Function

symbol description
tmem167b Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Orthologous to human TMEM167B (transmembrane protein 167B).

GO:

id name namespace
GO:0005794 Golgi apparatus cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040808-17 Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Orthologous to human TMEM167B (transmembrane protein 167B).

Ensembl:

ensembl_id ENSDARG00000059400

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006221 True 2130 mRNA 0.40 3 2699951 2707028

Neighbor

gene id symbol gene type direction distance location
XLOC_003152 b3galt6 coding upstream 9018 2685112 ~ 2690933 (+)
XLOC_003151 si:ch211-160o17.4 coding upstream 15356 2649664 ~ 2684595 (+)
XLOC_003150 si:ch211-160o17.3 coding upstream 50455 2633743 ~ 2649496 (+)
XLOC_003149 FQ790208.1 coding upstream 83928 2615070 ~ 2616023 (+)
XLOC_003148 dnajc14 coding upstream 90127 2596667 ~ 2609824 (+)
XLOC_003154 mapk14b coding downstream 3502 2710530 ~ 2760373 (+)
XLOC_003155 srpk1b coding downstream 56140 2763168 ~ 2826562 (+)
XLOC_003156 CT583672.1 coding downstream 120525 2827553 ~ 2828675 (+)
XLOC_003157 kif21b coding downstream 148402 2855430 ~ 2974067 (+)
XLOC_003158 cpne5b coding downstream 298508 3005536 ~ 3195882 (+)
XLOC_003250 BX324177.11 misc downstream 8638775 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 8665858 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 8679334 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 8711005 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 8722365 11429393 ~ 11429689 (+)
XLOC_003140 NA non-coding upstream 379596 2308209 ~ 2320355 (+)
XLOC_003139 NA non-coding upstream 494153 2198530 ~ 2205798 (+)
XLOC_003138 mir196c non-coding upstream 509221 2190621 ~ 2190730 (+)
XLOC_003133 NA non-coding upstream 747357 1951631 ~ 1952594 (+)
XLOC_003159 dre-mir-724 non-coding downstream 469658 3176686 ~ 3176770 (+)
XLOC_003160 NA non-coding downstream 496459 3203487 ~ 3206698 (+)
XLOC_003164 NA non-coding downstream 624085 3331113 ~ 3333714 (+)
XLOC_003169 NA non-coding downstream 908722 3615750 ~ 3735803 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location