XLOC_003155 (srpk1b)


Basic Information

Item Value
gene id XLOC_003155
gene name srpk1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 2763168 ~ 2826562 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006227
ATGCGCCGACCGTTACATGTGAGTGACTGTGAGCACTTTAGCCGCCGGTGCAGCATGGAAAGGAAAGTACTTGCACTTCAGGCCAGGAAGAAAAGGACCAAAACCAAGAAACCTGGCAAAAAGCCTGATCCTCACCCGAGGGGCGCCGCGCAGCAGCCTGACGCTCTGCAGGAGCAAGATGAAGAGATCCTGGGCTCCGATGAtgaagaacaggaggatcccaaTGATTACTGCAAGGGTGGTTACCACCATGTGAAAATAGGCGACCTGTTCAACGGACGGTATCATGTAATCCGCAAGCTGGGTTGGGGCCACTTTTCCACTGTTTGGCTTGCCTGGGACACACAAGGGAAGCGTTTTGTGGCCATGAAAGTGGTGAAGAGCGCCGAACACTACACTGAAACAGCCCTGGATGAGATCAAGCTCCTGAAAGCTGTCAGGAACACAGACCAGAATGATCCCAGCAGAGAGAAAGTGGTGCAGTTATTGGATGACTTCAAGATCTCAGGCGTCAACGGAACCCATGTGTGTATGGTGTTTGAAGTTCTCGGCCACCATCTGCTCAAGTGGATTATTAAGTCTAATTATCAGGGCCTGCCTCTGCCGTGTGTCAAAAGCATCATTCGACAGGTTCTGCAAGGCCTGGATTACCTGCACACCAAGTGTAAGATCATTCACACTGACATAAAGCCAGAGAACATCCTCATGGACGTCAATGAAGCGTATGTAAAGAGACTGGCAGCGGAGGCCACAGAATGGCAGAAATCTGGAGCTCCACCGCCTTCTGGGTCCGCAGTGAGTACAGCTCCAGCCCCAAAACAAGCGACTAAAATGTCCAAGAACAAGAAgaaaaagatgaagaagaagCAGAAGCGTCAGGCGGAGCTCTTGGAGAAGAGGATTCTGGAGATCGAGGGACTGGAGAAAGGGCTAGATGGAGGAGAAGAGGAAGATGAGGATGAAACGGAGACGCCCGACAGCACCCCGTCAGTGCCCAGCAGTCACACGCTACAGGACATCAGCACTGAGACCACACTGGATGGCACCTCAGAAGCTTGGTCTCAGGTCACAGGATCCGTCAACGGTCACATCCCGAGCCCAGAAGACGAGCAGAGCCTTGACGTCCAGCAGCAGATGAAGGACGAGACCCCTGTTAACCCCTACGACAGCGGCAACGAGACCTCCGAGCCCACCAACCCCTACCCAGCATGCAACGGCACAGAAGAGACCGAGCCCAGCCCCGCATGCCTGTCCGCCGCTGACGGTAATGGAGCTTTGATTAGTGGCATGGTTGAGTCTCAGGGCTGTAGGGTGCAGGATGGAGAAAGCCTGACGGCGGAGCTGAAGGATCCCAGAGCGGAGATGGAGGCGGAGCCCGGCACGCAGGCGGTCCCAGAAGAGGAGGAGAGCCTGAAGGACGCTAAAACTGCAGCAGGAAACCTGCTAGTCAACCCTCTGGAGCCGCTAAACGCTGAGAAGATCCAGGTGAAAATCGCTGACCTGGGCAATGCCTGCTGGGTGCACAAGCACTTCACAGATGACATTCAGACGCGGCAGTATCGCTCTCTGGAGGTGCTGATCGGAACGGGATACGGTACTCCAGCAGACATCTGGAGCACAGCCTGCATGGCGTTTGAGCTGGCTACCGGAGATTACCTGTTTGAGCCTCACTCCGGAGAGGATTATTCCAGAGATGAAGATCACATCGCATTGATCATTGAGCTGCTGGGGAAGATTCCTCGTAAACTCGTCATGAATGGCAAATATTCCAAGGAGTTCTTCACCAAGAAAGGTGACCTAAGGCACATCACCAAACTGAAACCGTGGGGTTTACAGGACGTCCTGGTGGAAAAGTACGAGTGGCACCGAGAGGAAGCACAGAATTTCTCCGACTTCCTCCTGCCGATGTTGGATCTCATCCCAGAGAAAAGAGCCACGGCCGCCGAGTGCCTCCGTCATTCCTGGATCAACTCCTAGTGGTCAAAATCAcatacacctacacacacacacacacactcatgcacttcTCTGAACTCATGAACTATCACACTGACAGACCCTTCTGTCTGAGGAGCCGATAACAGCAGATCTGATCTCAAtccatttctttttttactataatttagGTGTACCGACATTTCCGTGGCTCGTGCTCTTAAACATTTATCTAACAATCACTTTTCTATCAATTTCCATCATATCACAGGGATGCTTCGAGACACTTCTGGATTGATTTCTCTTTTAGAAGGCTGGATTTGCTCCAGTTTCACTGACCGTGACCGTTTTTTAGTCCATGTCCGCCAGTAACTCGGACTCGGTAGCTGATTGTAGTGTTTCTTCACCGTATTAATAAACGATTGTTAATCGCAA

Function

symbol description
srpk1b Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in intracellular signal transduction; regulation of mRNA processing; and spliceosomal complex assembly. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm and nucleus. Orthologous to human SRPK1 (SRSF protein kinase 1).

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0050684 regulation of mRNA processing biological_process
GO:0006468 protein phosphorylation biological_process
GO:0010468 regulation of gene expression biological_process
GO:0000245 spliceosomal complex assembly biological_process
GO:0016310 phosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0004707 MAP kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070112-2292 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in intracellular signal transduction; regulation of mRNA processing; and spliceosomal complex assembly. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm and nucleus. Orthologous to human SRPK1 (SRSF protein kinase 1).

Ensembl:

ensembl_id ENSDARG00000031560

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006227 True 2370 mRNA 0.52 16 2763168 2826562

Neighbor

gene id symbol gene type direction distance location
XLOC_003154 mapk14b coding upstream 2795 2710530 ~ 2760373 (+)
XLOC_003153 tmem167b coding upstream 56140 2699951 ~ 2707028 (+)
XLOC_003152 b3galt6 coding upstream 72235 2685112 ~ 2690933 (+)
XLOC_003151 si:ch211-160o17.4 coding upstream 78573 2649664 ~ 2684595 (+)
XLOC_003150 si:ch211-160o17.3 coding upstream 113672 2633743 ~ 2649496 (+)
XLOC_003156 CT583672.1 coding downstream 991 2827553 ~ 2828675 (+)
XLOC_003157 kif21b coding downstream 28868 2855430 ~ 2974067 (+)
XLOC_003158 cpne5b coding downstream 178974 3005536 ~ 3195882 (+)
XLOC_003159 dre-mir-724 coding downstream 350124 3176686 ~ 3176770 (+)
XLOC_003160 NA coding downstream 376925 3203487 ~ 3206698 (+)
XLOC_003250 BX324177.11 misc downstream 8519241 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 8546324 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 8559800 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 8591471 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 8602831 11429393 ~ 11429689 (+)
XLOC_003149 FQ790208.1 non-coding upstream 147145 2615070 ~ 2616023 (+)
XLOC_003140 NA non-coding upstream 442813 2308209 ~ 2320355 (+)
XLOC_003139 NA non-coding upstream 557370 2198530 ~ 2205798 (+)
XLOC_003138 mir196c non-coding upstream 572438 2190621 ~ 2190730 (+)
XLOC_003133 NA non-coding upstream 810574 1951631 ~ 1952594 (+)
XLOC_003164 NA non-coding downstream 504551 3331113 ~ 3333714 (+)
XLOC_003169 NA non-coding downstream 789188 3615750 ~ 3735803 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000057_01780001_01798256 SRPK1, SRPK1B coding CI01000057 null 1780001 ~ 1798647 (+)
bowfin (Amia calva) AMCG00009764 LOC103384391,LOC107373447 coding CM030126.1 CM030126.1 45643238 ~ 45647541 (+)