XLOC_003160


Basic Information

Item Value
gene id XLOC_003160
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 3203487 ~ 3206698 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008516
gtgtgtgtatatacagtatatatatatatatatatatatatatatatatatatatatataaaacagagtCTTGTGAACTTGTTTAACTTCATAAGGGTCAGATATTTAACTGTCCTGATGTGCTTACACCAGccagatctcacaaggaaacataactattttacattttgtcattttaatagctaattcgtacaaatccccccccccccccaccctacCGTTATTGCGAgttaagcaaatcgtactaaactgtacaaatgagatcgtacaaattcatacaaagtgaaatttatttctaaactaatttggcgaggatcacgtgcttatgattgcttgcgtccgttcccgcattattcaatttatgattcaaccaggtgattcctaagccactataaataccctaagatccacataacagccatcttcatccacccctactcctccaccttttctagatgggtggcacggtggctcagtggttagcactgttgcctcacagcaagaacgtcactggttctagtccttaccaagccagacGACGTTTCTGTgcgtttacacattctccccgtgctcacgttcTCCGGATTCCCCGGTtttctcccaccgtccaaaaacatgcaacttaagttaattgactaatccaaatcagcaccatagacatgctcctagtaagtagtgaTCTTTATTAGATGGAACCGGTTCTCGATACCCAGCCCTATTATACAGTGTCGACAGAGATCGTTTTTCTAAAACGCAATACAAACGATGTCTGGATGAGGAGCGTTTTCattgtaaaatggcattttaaaatataatgatcAAGTGTAAGTATCACCATAGGTTAACTAGCATTAATTGCTATTTTTCTGCCTTTTTATTAGGTTTGGATCTAAAAAATAGTTTTCTCCACAATTAATTTCAGTGCtaaaaagtgtttttctttttaaaataaatttcacaGGTTTTTCGACTGTGAAAACGTaagaaaacgtaactattttacattttgtcagttttgtggctaattcgtacaaactcgtacaagttcagtcgtaagaaaatgtatgatttttaaaaggaggcgtggcaccaaaccccacccctaaacccaaccgtcattggtggatgagcaaattgtactaaattgtacaaatgagatccactgaatcaaaaagttacaaattggtgTGAGATAGCATTGGTATTTCATGTTTTGCTCATCAACAAACCTACAACAAAAGTTttctgctattattattaaattattagattTTCTATGCACTCTTTTGCTGTTCAAAGTgttaaaactgaactgaacacaCTCTACACCGCAGTGGTCAGCGAGAATTGGGAATTGTAAATACGCTTATGTGATGTTTTACTGCGTTTTCCAGTGTGGACCAACAAAAAGTTTACAATCTTCTATTTTTCATCATTTCTCATTACGGGAGCACTTTAAATGATCTATTTGTTTCCCTTTCTCAAGACGATGctgtaaaaaacaaaagagagagaaaaatccatttatttttgTTCCTACCAGGAATGTATGATAAGCCATTAAATTCAGCAAATAATAGAGTGGACAGTGTAGAGAATGTATGTATACGTGTTTTACAGGAAGTGTGTGGCACAGGACCTGTTACGCATACGTTACGTGCACCCATCCACATGTAACATACTGTAGAGACTGTTTTCATCACAATACTTGTGCATGTATGGCCTGAAGCATCGTGGATCGATTGGGTTTGTTTTCTCTTGCTATTTCTGTAGTTACGttgggatgttttttatatatatacatatatcaaaatatatatgttaaaggTACACTATGAAACTTTTGGCCAGGcggttaataaataaaactgcatgcGGGTTGTGGAGGAATGaaatgatttagttttttataaagATATCATCTACACCAATAAGTAATCCCATTGGTGAGTTATTGCAAATATTGATGTGTTTATGGTAAATTTTCCAGTTTACTAGATATCATGCTAGAGAGCTAAAGACATTCTTTATTTGGTGATTATTAGATTTTCATCACTGAAATTAAATGCAGCATAAGCACTGCAACACACCATATAGAAATAACATCAGCTAAAGATATATAATGAACTGACAAACTTGTCACCGAGCTACAAAACTTGAGCAAGTAAGAGGCATTTAGAATAAGAGTTAAACCCTTATAAATCCCTAAAAAGCCAAGTCAATGTTGATTCAGGTTTTATTAcagcccagcaggcacaggacatcaacatgatgtcagctTGACATTGTACCTCTACATTGTGGGGACATTGcaatttgtttgtaaatgaaaatcaggttgaaaTCAGAACCCAATGTTGgaccgacatcaatgtccaacctgaaatcaaccaaatatcaacatctaatgattttgactttttgactttgactttgtatggacgttaccactatgacgtctattagatgttggattGTGGTTGTCAcacacctgacgaataaatgtcagtttttgatgtcaatatgactttGGTTTAAATTGTTGGCTCAACGTTAGATTTTGGCCACTTTCcgaaacaacctaaaatcaatcaaatatcaacatctaatgaagttacagcttgacattttgtgaacgttaccacttttatcagacgttggattttggttcaTCCTTTGGTTCATCCATGCTTTGAAAGCAAGGTGTTTACTCAGTTTCTAAGActgtaactaatcacttttaacagTGTATGTGTGCAGTTTTTATCTATCCTGATGTTTTAATTAGCTCATGTTATTAGCTTATCTCAGTGTTTCAGGGCTAGAGACTAAAGTATGATTCTGAAAGCAGATTCACAATGTTTTTGCTTTAATGTTTGTTATATTTCTGAAGCAACAGGTTGCATAGTGTACCTTTAACAAACCTCATTTATATTCATCTGCAGCACTGACGGCCAACCAGCATACCACGGCCAATATTAATATCTACTATTACAGCTTGTAATATACACGTTTTATTTCTCAATTtcgtttttttaattatcaacatACATCAGAGCATTTTCACATGGTTTAACTGTTATTATTTCTTTTGCATGTTTGCTCCCAACAGATTCTATTGTACATGATCTTTGTCATACGGTGGGTTGTGAAATGGTTTGTATTGAAATGCcttaactaaatattaataaaagtttttacAAACTCAAGAC

Function

GO:

id name namespace
GO:0006887 exocytosis biological_process
GO:0099643 signal release from synapse biological_process
GO:0050877 nervous system process biological_process
GO:0016079 synaptic vesicle exocytosis biological_process
GO:0048489 synaptic vesicle transport biological_process
GO:0043010 camera-type eye development biological_process
GO:0007267 cell-cell signaling biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0045161 neuronal ion channel clustering biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0045162 clustering of voltage-gated sodium channels biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0032940 secretion by cell biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0046903 secretion biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0042551 neuron maturation biological_process
GO:0099500 vesicle fusion to plasma membrane biological_process
GO:0017156 calcium-ion regulated exocytosis biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0031629 synaptic vesicle fusion to presynaptic active zone membrane biological_process
GO:0048880 sensory system development biological_process
GO:0007626 locomotory behavior biological_process
GO:0023061 signal release biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0097479 synaptic vesicle localization biological_process
GO:0097480 establishment of synaptic vesicle localization biological_process
GO:0003008 system process biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process
GO:0001654 eye development biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0007423 sensory organ development biological_process
GO:0051640 organelle localization biological_process
GO:0051648 vesicle localization biological_process
GO:0051650 establishment of vesicle localization biological_process
GO:0051656 establishment of organelle localization biological_process
GO:0045055 regulated exocytosis biological_process
GO:0150063 visual system development biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0030133 transport vesicle cellular_component
GO:0042734 presynaptic membrane cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0070032 synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex cellular_component
GO:0045202 synapse cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0098793 presynapse cellular_component
GO:0005484 SNAP receptor activity molecular_function
GO:0017075 syntaxin-1 binding molecular_function
GO:0000149 SNARE binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0019905 syntaxin binding molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008516 True 3212 lncRNA 0.35 1 3203487 3206698

Neighbor

gene id symbol gene type direction distance location
XLOC_003158 cpne5b coding upstream 7605 3005536 ~ 3195882 (+)
XLOC_003159 dre-mir-724 coding upstream 26717 3176686 ~ 3176770 (+)
XLOC_003157 kif21b coding upstream 229420 2855430 ~ 2974067 (+)
XLOC_003156 CT583672.1 coding upstream 374812 2827553 ~ 2828675 (+)
XLOC_003155 srpk1b coding upstream 376925 2763168 ~ 2826562 (+)
XLOC_003161 timeless coding downstream 5128 3211826 ~ 3272020 (+)
XLOC_003162 mmp19 coding downstream 72341 3279039 ~ 3291771 (+)
XLOC_003163 sarnp coding downstream 101958 3308656 ~ 3318747 (+)
XLOC_003164 NA coding downstream 124415 3331113 ~ 3333714 (+)
XLOC_003165 pusl1 coding downstream 292413 3499111 ~ 3525259 (+)
XLOC_003250 BX324177.11 misc downstream 8139105 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 8166188 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 8179664 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 8211335 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 8222695 11429393 ~ 11429689 (+)
XLOC_003149 FQ790208.1 non-coding upstream 587464 2615070 ~ 2616023 (+)
XLOC_003140 NA non-coding upstream 883132 2308209 ~ 2320355 (+)
XLOC_003139 NA non-coding upstream 997689 2198530 ~ 2205798 (+)
XLOC_003169 NA non-coding downstream 409052 3615750 ~ 3735803 (+)
XLOC_003170 NA non-coding downstream 564568 3771266 ~ 3783125 (+)
XLOC_003176 CR559931.1 non-coding downstream 2275055 5481753 ~ 5481884 (+)
XLOC_003178 CU855733.1 non-coding downstream 2324745 5531443 ~ 5531576 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G243797 NA non-coding CI01000057 null 2105697 ~ 2111516 (+)