XLOC_003165 (pusl1)


Basic Information

Item Value
gene id XLOC_003165
gene name pusl1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 3499111 ~ 3525259 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006244
ggCATCGCTTCGGCTTCTAAACGTCAAACAGCTGCTAGGGCGCACACACACATGGCTCTGTGTTTATCATGTCTGTATCGCGTGTTGTGCTCAGTTTGGgttatatataacatttaataaagaTTTGTATATTTACTTCAGcgacacaaacacatacacaaacacacgttGGTCTCTCAATCCTGTTTATGCTCCGCGACTTTAACGTTAAACGAACGGACTGTGAATCATGCAACAAACTGTCGCGCGGTATTTAATCTTTTTCCAGTACACAGGGAGCAAATACAGTGGTGTGATGAAGGCTCCAGCTCATCAAGCTGTACAGGGGGTCGGGAATCATTTAGAGAATGCAGTGAGGAAGCTGAAGCCGGTGAATGAGGTGTGTGTGTCCATCTCCAGCAGAACAGACACTGGTGTCCATGCTTTGTGTAACTCTGCTCATGTAGATATCCAGCGGAGAGCAGACAAACCACCCTTGTCAGAGCAGAGCCTGCTCGaggctttaaactttcaattaaAAGAAGAACCTATAAGAATCACCAGAGCTTACCGTGTCCACAGTGACTTCCACGCACGCTATCAGGCGCAATCGCGGACATACGTATACCGCTTGGCTCTGGGTTGTCAGCATCACACACTAATGCCACTGACGGAGAAGGATCTATGCTGGGCATTACGAGACACGAGGTTAAATATTGATGCGATGCGTGAGGCGTCAGCACTGCTGTTAGGAACCCATGACTTCAGCACTTTTCGGGCCTTGAGCTCCGATGCCCCCTTTAAGTGCCCTGTGAAGACCCTCGATTTAGCCCAGCTGGAGCCTGGAGAATCATTCTCTCAGAGACACTTTCAAAGAGACATTCAGTTCTGGGAGCTCACTTTTAAAAGTAGGTCTTTTTTATACAGACAAGTGCGCAGGATGACCGGAGTGCTGGTTGCTATTGGTCAGGGTCGACTTTCTGTAAGTAAGATACAAGATCTATTAGAGGCGCGTGATTCGTTGGCATTCCCAAATAACCTGACGGCCCCAGCCCATGGCCTGTTTCTGACCAATGTACAGTACAGAGATACAGATCTTGTGGCTTCCATGTCAGAAGAACAATAATAGAGTTAGTTAATAATTTTATCATAATTATCAAGGCATggacattttaaattgtttaaaaatgtcaataaactgtttttgttatttttcttcaACTCTTTCTGTCATGACCATACTTTTACACACATGCTTGGTTATACATTAGTCAGTTCAGCGTTTTAGCTCAATGCTAATGCAATCACAGCACATCGTTTCTGACCGAAGTCTCTTTTTCTCAATCTAGTTAAACTTGATTTAAAATGACGGTTTTAACATTGTTGTATTTTTCAATTGTATTTCTATCATATGATTAATAGCTAAAGGTTCTGCCTTCTGGAGATGTTtgagaaacatttcttattattatcagtgttgggaAAAGCTGCGCTGCTTTATATTGTTGAGATACTGTGATATTACCATTCATCATATTTATTCAAGTGCACATTAAATtgtgacaaaatgtaaaaaaataaatactatatatacatagacacatttatatatatatatatatactcactggtcactttatgagGTAGaccagtccaactgctcgttaccgcaaatttctaatcagccaatcacatgacagcaactcaatgcatttaggtatgaagacatgatcaagatgatctgctgcaggtcaaacctcatcagaatggggaagaaagctgatttaagtgactttgaatgtggcatggttgttgatgccagacaggctggtctgagtatttcagaaactgatgatctactgggattttcatgcacaaccatctctagggtttacagagaatgggaggaaatatcaagtgagcggcagttctgttggtgcaaatgccttgttgaggccagaggtcagaggagaatggccagactggttccagctgatagaaaggcaacagtaactcaaacaaacactcgttacaaccgagctctgcagaagagcatctctgaacacacaacacgtccaaccttgaggtggatgggctacagcagcagaagaccacaccgggtgccgctcctgtcagctgagaacaggaaactgaggctacaattcacacaggctcaccaaaactggacaatagaagattggagaaacgttgcctgctctgatgagtctccatttctgctgccacattcggatgttctggtcagaatttggcacactttgggtccactAGTACTATtaaagcatcgtgtcaacgccacagcctacctgagtgttgttgcttaccatgtccatccctttatgaccacagtgtactcttcttctgatggctgcttccagcaggataacgcatcatgtcataaagcgtgaatcatctcagactggtttcttgaacatgacgatgagttcactgttctcaaatggcctccacagtcaccagatctcaatccaatagagcacctttgggatgtggtgaaacaggagattttcatcatggatgtgcagccgacaaatcttgttgaatctatggcatGAAGGAAAAGGGGTCCACCCAgtaatagtaaggtgtatctaataaagtggccggggattgtatatctatatgtattagctctcctgtgaagacttaattgtttttctaatatttcccaaataatgtttaatctggaaagtcttatttcttaagtttgttgccattaaaaaaaaatgtttttgtccaGTGacaacctagtcaagcctttaaaatgcaccttcagctgaatactagtatttgacaaaatgactgaaatatatatattctttaaacATGGCAACCCAttgttatttgaaaataattaagatattgtttaaaaaatgtgttggaaaaaaatctacagcacttaggaaatatttaaagatgatagctatatacatacagtgctcaacgtacgagtacacccctcacaaatctcaaATCTttcttaaattcatattttaataggaagctatacaatattatatttgtgcatatacattagattagtcagtactgaagccaaatctggagattACCTAACAAAAGAACTTGCGTGAACGATCCAAAAACTAGTTCAGCCAAATTTAccttatagaaaaatattaaatacaaataaaaaaagatgaaaaatccaaaacaaaaaaTTGTTTACAATTTAGTTGAAATAGTGTagtttgtcatttgtttttgctatattttgcttgAGTTGAATTGtattcttttaatttctaaatatatttggcgtctaaaataatattttaataaataaatctgttaaatgcaccaaaatacattgcctgaattcactgagaaatgaagaaaaataataactttcaaaatggggtgtactcgtgTATAAGCTAAGCACTATACATGACAAACAAAAGCAGAAATGACATGAAGCTTGTCGAACACGCTTGGATTCATAGGTTTATTCTATCATACATCATTCAGTCGCCAACATCAGCACGAATGCAGCACACCCGAGAGCTGCTCCAAGACCCAAACGCAAGCATTCCCTCATCCGGTAACATCCAATCATAGTCCGTCTCAACACAAACCACTTTTAAAAAGATGCACACTTTGTGTGTGTCGTCAACATTCAACTGAGGTGAAACTCCAGGAATTATCATCCATTTCAAAAGGCTGATTTGTCAGCAAGAAGTGCATGttctctaaaaacaaaacatcaactAGACAAAGAAAACCACATCATTTTGAGGTGAACATGACAGTATATGAAGTGAAAACAGCAACGAATTGTCCTCGAGCATTATGAGTATTTCAGTTACGCTCTTTAAAAACAAAGCGAAAGCATAATAATGCAGGAATGTGTTTGATAATATCCACAAGTCCATTTATTATCTGAAGCAGCACCAGGTTAATTAGCTTCAACTAGACAGtctttgtttagattttacataCAACCAAAAATATAAACCTCTCTCTTTAATATAATCATAACAAGTCAAGTATAATTGACAGCTTTAATTAAACCGACAAGGCATCAGGAGATATATTGAGCAATCTAGAAAGTCTTCCCTTCAAAAGACGCGACTGAAATACTTGCGACAACACACACACCAATgaataaaatgtctaaaatgcaTATATAGTGGAGCCGAGTGCAGTGCCTGTTGAGTTGAGAGTGGCTAATCTAAAATAGTCCTACGTGATGGTTACCCTGCCTGTTTTGAAGGCGGCTGAAAATGGGAATGCAGCACAGCCTTTACCGTGAACAAATACGTTAACATACTTAAACCTGATCGTTTGCAATTCAGTGCAGTCTCCTACCGCATAACGGCTACAGAAAATCCTCCACCTTCATTACACTGCATCTGCTTAATATATAGTGATCATTTCACTCTTTGTACTTGTTAAATATGGACAATAATATTCCTACAAACAAACACAGAGGCTTGTTTTTAGATGTCAAGTACTAGCGAATCCATAGGAGGCACAAATCTTTGGCTTTCGCATGATTTTAGATTAATAACAGGACTTTGGCGATGGTTTCTCTTGAATTCGAAGCCAATAAGAGCGAGCTTACTTTCACTTCTGGTTGTAATGAGGTATTAAAATGTGTAACAATGACAAATCTCATTTAATACAGTTGAAAACCCTGCTTTAGATTGATCGTTTTAGGAAGAGTCAACAAAACCTATATGTACTTGAATgcaacaattaataataatatcgaTGAACACACTTGAATGAAAGACGATGATCCACTAAACGTTCTGGGTTTGGAGTTCCATGATAAAACTCAATATAGGAgttcatgatttttattttttgaaggcAGGCGATTTTAAAAAGGTGCATGATGTAACGGTTAATCTTGAAAAGGCATATTCTCCTTGTCAGTGTCCCAGACGGCTCCCGCAGGATTCTCGTAGACGTGACGTTAAGACTACACATTCAGCATTTATTAAGTACAAAGagtgaaacaaaataaaagaccTATAAAAACACCATCTGAGATAAAACTGCTCCACATGTAAACATCCGCTCTGGCACAGCTCTGCTTCCAGCCTCTGAATTAAAATGTAGCGTGAGCACAGTCCTATTGTAAACGTCACAGGCGGACGCTCAGTTGGCGATCTTCTCGATCTCATCCAAATCATCGGTGTCCAGTTTCTCAATTTTCTTATCTGTAATAAAGAGACGAATCAATTCAGTCAACTTTCAGAGTCAATGTAAaaaagataaaattaaataaaataaaaattggttTCATAGTAAATGAAGAGATAGAGAGATCTAGATGTATATTtctagatatagatatatagatgtagacaaatatagata
>TCONS_00006245
AACAGCTGCTAGGGCGCACACACACATGGCTCTGTGTTTATCATGTCTGTATCGCGTGTTGTGCTCAGTTTGGgttatatataacatttaataaagaTTTGTATATTTACTTCAGcgacacaaacacatacacaaacacacgttGGTCTCTCAATCCTGTTTATGCTCCGCGACTTTAACGTTAAACGAACGGACTGTGAATCATGCAACAAACTGTCGCGCGGTATTTAATCTTTTTCCAGTACACAGGGAGCAAATACAGTGGTGTGATGAAGGCTCCAGCTCATCAAGCTGTACAGGGGGTCGGGAATCATTTAGAGAATGCAGTGAGGAAGCTGAAGCCGGTGAATGAGGTGTGTGTGTCCATCTCCAGCAGAACAGACACTGGTGTCCATGCTTTGTGTAACTCTGCTCATGTAGATATCCAGCGGAGAGCAGACAAACCACCCTTGTCAGAGCAGAGCCTGCTCGaggctttaaactttcaattaaAAGAAGAACCTATAAGAATCACCAGAGCTTACCGTGTCCACAGTGACTTCCACGCACGCTATCAGGCGCAATCGCGGACATACGTATACCGCTTGGCTCTGGGTTGTCAGCATCACACACTAATGCCACTGACGGAGAAGGATCTATGCTGGGCATTACGAGACACGAGGTTAAATATTGATGCGATGCGTGAGGCGTCAGCACTGCTGTTAGGAACCCATGACTTCAGCACTTTTCGGGCCTTGAGCTCCGATGCCCCCTTTAAGTGCCCTGTGAAGACCCTCGATTTAGCCCAGCTGGAGCCTGGAGAATCATTCTCTCAGAGACACTTTCAAAGAGACATTCAGTTCTGGGAGCTCACTTTTAAAAGTAGGTCTTTTTTATACAGACAAGTGCGCAGGATGACCGGAGTGCTGGTTGCTATTGGTCAGGGTCGACTTTCTGTAAGTAAGATACAAGATCTATTAGAGGCGCGTGATTCGTTGGCATTCCCAAATAACCTGACGGCCCCAGCCCATGGCCTGTTTCTGACCAATGTACAGTACAGAGATACAGGTGAGAACGTCTGAAATACCACACAGCTAGTCATTAGTGTACATTTTAGACTACACTATTTGACTGGAAGACACTGTACAGAACAACATAACCCACAATGCAATGCGTCTGCTCATCTGTTAAATAATCAAACAGCAAAATCTGTAGTGAAAACAAACTGCATTACCTTTAACAGAACACTTTGCAGCCCATATGAGTATACTGATTTACTGCATAATGTAATACTCTTATTTCTTACAGATCTTGTGGCTTCCATGTCAGAAGAACAATAATAGAGTTAGTTAATAATTTTATCATAATTATCAAGGCATggacattttaaattgtttaaaaatgtcaataaactgtttttgttatttttcttcaA
>TCONS_00006246
GCGTGTTGTGCTCAGTTTGGgttatatataacatttaataaagaTTTGTATATTTACTTCAGcgacacaaacacatacacaaacacacgttGGTCTCTCAATCCTGTTTATGCTCCGCGACTTTAACGTTAAACGAACGGACTGTGAATCATGCAACAAACTGTCGCGCGGTATTTAATCTTTTTCCAGTACACAGGGAGCAAATACAGTGGTGTGATGAAGGCTCCAGCTCATCAAGCTGTACAGGGGGTCGGGAATCATTTAGAGAATGCAGTGAGGAAGCTGAAGCCGGTGAATGAGATATCCAGCGGAGAGCAGACAAACCACCCTTGTCAGAGCAGAGCCTGCTCGaggctttaaactttcaattaaAAGAAGAACCTATAAGAATCACCAGAGCTTACCGTGTCCACAGTGACTTCCACGCACGCTATCAGGCGCAATCGCGGACATACGTATACCGCTTGGCTCTGGGTTGTCAGCATCACACACTAATGCCACTGACGGAGAAGGATCTATGCTGGGCATTACGAGACACGAGGTTAAATATTGATGCGAT
>TCONS_00006247
GCAGACAAACCACCCTTGTCAGAGCAGAGCCTGCTCGaggctttaaactttcaattaaAAGAAGAACCTATAAGAATCACCAGAGCTTACCGTGTCCACAGTGACTTCCACGCACGCTATCAGGCGCAATCGCGGACATACGTATACCGCTTGGCTCTGGGTTGTCAGCATCACACACTAATGCCACTGACGGAGAAGGATCTATGCTGGGCATTACGAGACACGAGGTTAAATATTGATGCGATGCGTGAGGCGTCAGCACTGCTGTTAGGAACCCATGACTTCAGCACTTTTCGGGCCTTGAGCTCCGATGCCCCCTTTAAGTGCCCTGTGAAGACCCTCGATTTAGCCCAGCTGGAGCCTGGAGAATCATTCTCTCAGAGACACTTTCAAAGAGACATTCAGTTCTGGGAGCTCACTTTTAAAAGTAGGTCTTTTTTATACAGACAAGTGCGCAGGATGACCGGAGTGCTGGTTGCTATTGGTCAGGGTCGACTTTCTGTAAGTAAGATACAAGATCTATTAGAGGCGCGTGATTCGTTGGCATTCCCAAATAACCTGACGGCCCCAGCCCATGGCCTGTTTCTGACCAATGTACAGTACAGAGATACAGATCTTGTGGCTTCCATGTCAGAAGAACAATAATAGAGTTAGTTAATAATTTTATCATAATTATCAAGGCATggacattttaaattgtttaaaaatgtcaataaactgtttttgttatttttcttcaA

Function

symbol description
pusl1 Predicted to enable RNA binding activity and tRNA pseudouridine synthase activity. Predicted to act upstream of or within pseudouridine synthesis and tRNA processing. Orthologous to human PUSL1 (pseudouridine synthase like 1).

GO:

id name namespace
GO:0001522 pseudouridine synthesis biological_process
GO:0009451 RNA modification biological_process
GO:0008033 tRNA processing biological_process
GO:0003723 RNA binding molecular_function
GO:0106029 tRNA pseudouridine synthase activity molecular_function
GO:0016853 isomerase activity molecular_function
GO:0009982 pseudouridine synthase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-101110-1 Predicted to enable RNA binding activity and tRNA pseudouridine synthase activity. Predicted to act upstream of or within pseudouridine synthesis and tRNA processing. Orthologous to human PUSL1 (pseudouridine synthase like 1).

Ensembl:

ensembl_id ENSDARG00000074565

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006244 False 5364 mRNA 0.39 8 3499111 3525259
TCONS_00006245 False 1414 mRNA 0.43 7 3499137 3521095
TCONS_00006246 False 559 nonsense_mediated_decay 0.46 6 3499190 3514108
TCONS_00006247 True 740 mRNA 0.45 6 3501669 3521095

Neighbor

gene id symbol gene type direction distance location
XLOC_003164 NA coding upstream 165397 3331113 ~ 3333714 (+)
XLOC_003163 sarnp coding upstream 180364 3308656 ~ 3318747 (+)
XLOC_003162 mmp19 coding upstream 207340 3279039 ~ 3291771 (+)
XLOC_003161 timeless coding upstream 227091 3211826 ~ 3272020 (+)
XLOC_003160 NA coding upstream 292413 3203487 ~ 3206698 (+)
XLOC_003166 CR558302.1 coding downstream 13729 3538988 ~ 3566250 (+)
XLOC_003167 si:dkey-33m11.8 coding downstream 50704 3575963 ~ 3584553 (+)
XLOC_003168 cdab coding downstream 60675 3585934 ~ 3593118 (+)
XLOC_003169 NA coding downstream 90491 3615750 ~ 3735803 (+)
XLOC_003170 NA coding downstream 246007 3771266 ~ 3783125 (+)
XLOC_003250 BX324177.11 misc downstream 7820544 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 7847627 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 7861103 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 7892774 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 7904134 11429393 ~ 11429689 (+)
XLOC_003159 dre-mir-724 non-coding upstream 322341 3176686 ~ 3176770 (+)
XLOC_003156 CT583672.1 non-coding upstream 670436 2827553 ~ 2828675 (+)
XLOC_003149 FQ790208.1 non-coding upstream 883088 2615070 ~ 2616023 (+)
XLOC_003176 CR559931.1 non-coding downstream 1956494 5481753 ~ 5481884 (+)
XLOC_003178 CU855733.1 non-coding downstream 2006184 5531443 ~ 5531576 (+)
XLOC_003180 NA non-coding downstream 2077081 5602340 ~ 5602721 (+)

Expression


Co-expression Network