XLOC_003168 (cdab)


Basic Information

Item Value
gene id XLOC_003168
gene name cdab
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 3585934 ~ 3593118 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006251
TCAAACACGGAGCATATGGGAGGAGGGAGAACTGGGAAAAGGGGATTGGACGTCGCATATGGGAAAAAAAGAACAACTAAATCACAGGCAACTCTGCTGAGCCGCAGAACgactacacacacactacatagcAACATGGAAGACCAAAAGATGATGCATGAGCTTATTAATGGGTTGAATGGGCACTTGTTGGGAATAAAAGAGTTGACTCGAAAATCTCAAGAGGCTAAGAAGTTTGCCTATTGCCCATACAGCAAGTTTCGAGTCGGGGCAGCACTGCTGACACATGACGGGACGGTTTTCACAGGGTGTAACGTGGAAAACGCATGCTTCAACCTGGGAATCTGTGCTGAGAGAGTTGCCATTTCCAAAGCTGTATCTGAGGGCTACAGGGATTTCAAAGCCATTGCTATTGCGAGTGATATGTGTGAGAACTTTATTTCCCCCTGTGGAGGATGCCGGCAGTTCATGAGAGAGTTTGGTTCTAACTGGGAAGTGTATTTGTCCAAACCTGACGGTTCCTATGTTGAGATGACGGTTGAGGAACTTCTGCCTGCATCTTTCGGACCAGAGGACTTAAAAATGAAGAAAGCGAACATTCGGAATGAGTTCTGAAGAGGAGATTCTAGAGGAGATCGCATATGTTGAAGCCAGAATTTTTACCAGCCCTCCTGTGActgtttttcttgtttaaatatttcccaaatgatgttgaacagattgaggagtttttcacagtatttcctataatatttttttcttctggagaaagtctgatttgttttattttggctagaataaaagcagtttttcatttttaaaatcattttaaggtcaataatactAGCCCCCTTAAGCAGTGTTTTTtcctcaaccttttttttttgccttgagACCTccttttattatgtattaaaaaaaaaaaattctctccgttaaacagaaattgaggaaagaaatatacagggggttaataattctgacttctcaACTGTACAGGAGAGCTTTGCTGTGTATATAGTACATTATGAAACATTGTGTTTAAAgggaaaatttaaatgaaaactacctcatcatttattctccctcatagGGTTTtaatcctttatgagtttctgtcttctgttgaacacattagATGACATTTGAAAGAATGCAAGTTGATGGAACCCctcgacttccatagtaatttagatttttcctactatggaagtcaatgggctttcagcattcttcaaagtatcttcttttgttttcaagaaactcaaacaggtttgaaacaagtgaagagggagtaaatgatgacagtgttTCCAtcataaactatccctttaacagtgCTGAATGTTAACTAATTTATATACTCTTTAAATGTATGTAAAGATTgtaattattcttatttttgaATAAACACCAAAATATGAGTGAA
>TCONS_00006252
GCTGAGCCGCAGAACgactacacacacactacatagcAACATGGAAGACCAAAAGATGATGCATGAGCTTATTAATGGGTTGAATGGGCACTTGTTGGGAATAAAAGAGTTGACTCGAAAATCTCAAGAGGCTAAGAAGTTTGCCTATTGCCCATACAGCAAGTTTCGAGTCGGGGCAGCACTGCTGACACATGACGGGACGGTTTTCACAGGGTGTAACGTGGAAAACGCATGCTTCAACCTGGGAATCTGTGCTGAGAGAGTTGCCATTTCCAAAGCTGTATCTGAGGGCTACAGGGATTTCAAAGCCATTGCTATTGCGAGTGATATGTGTGAGAACTTTATTTCCCCCTGTGGAGGATGCCGGCAGTTCATGAGAGAGGTAAGTTCCTTTTTACACTGTATTCAGTGCTTCAaggattttgc

Function

symbol description
cdab Predicted to enable cytidine deaminase activity and zinc ion binding activity. Predicted to be involved in cytidine deamination. Predicted to be active in cytosol. Is expressed in liver. Human ortholog(s) of this gene implicated in lung non-small cell carcinoma. Orthologous to human CDA (cytidine deaminase).

GO:

id name namespace
GO:0009972 cytidine deamination biological_process
GO:0005829 cytosol cellular_component
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0003824 catalytic activity molecular_function
GO:0004126 cytidine deaminase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1911 Predicted to enable cytidine deaminase activity and zinc ion binding activity. Predicted to be involved in cytidine deamination. Predicted to be active in cytosol. Is expressed in liver. Human ortholog(s) of this gene implicated in lung non-small cell carcinoma. Orthologous to human CDA (cytidine deaminase).

Ensembl:

ensembl_id ENSDARG00000038199

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006251 False 1429 mRNA 0.38 4 3585934 3593118
TCONS_00006252 True 426 lncRNA 0.46 3 3586029 3590937

Neighbor

gene id symbol gene type direction distance location
XLOC_003167 si:dkey-33m11.8 coding upstream 1381 3575963 ~ 3584553 (+)
XLOC_003166 CR558302.1 coding upstream 19684 3538988 ~ 3566250 (+)
XLOC_003165 pusl1 coding upstream 60675 3499111 ~ 3525259 (+)
XLOC_003164 NA coding upstream 252220 3331113 ~ 3333714 (+)
XLOC_003163 sarnp coding upstream 267187 3308656 ~ 3318747 (+)
XLOC_003169 NA coding downstream 22632 3615750 ~ 3735803 (+)
XLOC_003170 NA coding downstream 178148 3771266 ~ 3783125 (+)
XLOC_003171 gnl3 coding downstream 366377 3959495 ~ 3971035 (+)
XLOC_003172 spcs1 coding downstream 396285 3989403 ~ 3993738 (+)
XLOC_003173 camk1b coding downstream 433111 4026229 ~ 4132662 (+)
XLOC_003250 BX324177.11 misc downstream 7752685 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 7779768 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 7793244 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 7824915 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 7836275 11429393 ~ 11429689 (+)
XLOC_003160 NA non-coding upstream 379236 3203487 ~ 3206698 (+)
XLOC_003159 dre-mir-724 non-coding upstream 409164 3176686 ~ 3176770 (+)
XLOC_003156 CT583672.1 non-coding upstream 757259 2827553 ~ 2828675 (+)
XLOC_003149 FQ790208.1 non-coding upstream 969911 2615070 ~ 2616023 (+)
XLOC_003176 CR559931.1 non-coding downstream 1888635 5481753 ~ 5481884 (+)
XLOC_003178 CU855733.1 non-coding downstream 1938325 5531443 ~ 5531576 (+)
XLOC_003180 NA non-coding downstream 2009222 5602340 ~ 5602721 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000057_02416295_02420310 CDA coding CI01000057 null 2416295 ~ 2420542 (+)