XLOC_031813 (si:ch211-85n16.3)


Basic Information

Item Value
gene id XLOC_031813
gene name si:ch211-85n16.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 6797520 ~ 6800387 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062314
AACAAGGAAGTGACGACATAGAGGCATGTTTTAACATGGCGGCGTCCTTGAGAATATagctatatttatgtttatttttgtcaatgtagcctgaaattaaaatttaagatTACATTACAGATTGACGATAATGGATCATGTAAAATGGCACCGGCGCGCGTCAATGCTTTATGCTATGGGTACTTGGACCTTGCTTGGTTATTGCTTTTACTCATACAAAAAAAAGCCTTCTCTTCCAGaAGAAACCACCTCCACCAAAAACAGTGACGAGGACACCACAATTGTAGAGAAACGTACAACAGCTTTCACGGAGACCACCGTCATCCAACGTGCTGGCACTGTGGAATATCACACCAGGCTTCTTAACCCCTTCAGGTCTAGAAATGACAGCCCTCCAGAGAATAAAACAGATGATGAAGAACTCAAATAGACTTTTTTCCAGACAAAATGTTTGGATAAATTAATGTTTTGGGACAATAATCTCATCCTTGGTTTCAACTAAGAGAAATGAAGCTCTCGGGCAACAAAATTGCATCTTGATGGTCATCTTTTGAGTAAAGCGTCTGTTAAGATAACTGGCAAATTAAATATCAAGTTGCCTTATTTAAGCCTTTAAGTTGTGGGTTTATTAGTGAATTACACTATTTAGGTTTGAGTGCCAGTTAGGTGTTTTTTTAGAAATAGGTACAGTTGATTATTAGGTTTTTTTCAGTCCCCAAAAAAAAGAAACGGAAGAAAACAG
>TCONS_00062315
ttgtaatgagtgcttatttgagttactgttgcctttctatcagctggaaccagcctGGCCATTTTCCGCTGACCTcgggcatcaacaaggcatttgcgtccacagaactgctgtTAATGAGCAattaaacaggtgtacctaataaagtgccgaAGAAACCACCTCCACCAAAAACAGTGACGAGGACACCACAATTGTAGAGAAACGTACAACAGCTTTCACGGAGACCACCGTCATCCAACGTGCTGGCACTGTGGAATATCACACCAGGCTTCTTAACCCCTTCAGGTCTAGAAATGACAGCCCTCCAGAGAATAAAACAGATGATGAAGAACTCAAATAGACTTTTTTCCAGACAAAATGTTTGGATAAATTAATGTTTTGGGACAATAATCTCATCCTTGGTTTCAACTAAGAGAAATGAAGCTCTCGGGCAACAAAATTGCATCTTGATGGTCATCTTTTGAGTAAAGCGTCTGTTAAGATAACTGGCAAATTAAATATCAAGTTGCCTTATTTAAGCCTT

Function

symbol description
si:ch211-85n16.3 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SMIM26 (small integral membrane protein 26).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-120215-137 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SMIM26 (small integral membrane protein 26).

Ensembl:

ensembl_id ENSDARG00000096346

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062314 False 742 mRNA 0.38 2 6797520 6800387
TCONS_00062315 True 526 lncRNA 0.41 2 6799291 6800258

Neighbor

gene id symbol gene type direction distance location
XLOC_031812 sec23b coding upstream 833 6779114 ~ 6796687 (+)
XLOC_031811 NA coding upstream 56112 6718916 ~ 6741408 (+)
XLOC_031810 zgc:113227 coding upstream 131094 6662479 ~ 6666426 (+)
XLOC_031809 bcl11ab coding upstream 256001 6491013 ~ 6541519 (+)
XLOC_031808 rps27a coding upstream 524001 6270686 ~ 6273519 (+)
XLOC_031814 dtd1 coding downstream 1755 6802142 ~ 6809598 (+)
XLOC_031815 RIN2 coding downstream 22205 6822592 ~ 6845993 (+)
XLOC_031816 RAPGEF4 coding downstream 50434 6850821 ~ 6922290 (+)
XLOC_031817 AL929341.1 coding downstream 79540 6879927 ~ 6880049 (+)
XLOC_031818 zak coding downstream 124250 6924637 ~ 6967588 (+)
XLOC_031807 BX324134.2 non-coding upstream 581610 6215794 ~ 6215910 (+)
XLOC_031805 NA non-coding upstream 711388 6085236 ~ 6086132 (+)
XLOC_031804 NA non-coding upstream 815662 5938465 ~ 5981858 (+)
XLOC_031803 CU074421.2 non-coding upstream 1113225 5684181 ~ 5684295 (+)
XLOC_031820 NA non-coding downstream 407206 7207593 ~ 7208629 (+)
XLOC_031826 AL953886.2 non-coding downstream 628924 7429311 ~ 7435700 (+)
XLOC_031828 AL953886.1 non-coding downstream 652968 7453355 ~ 7453831 (+)
XLOC_031837 NA non-coding downstream 1464377 8264764 ~ 8271403 (+)

Expression


Co-expression Network