XLOC_031839


Basic Information

Item Value
gene id XLOC_031839
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 8339271 ~ 8346941 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062364
GAGATCTTCAAACCTCCACCACTTACCTCACAGTCAGTCTGTCCATTCAAACAGAGGAAACGGGAAAACACAGTCCGCGTCCTTCGATGAGTCCTGATTTAAACTTTTTATCTAACTGAACAGTTTAAAACGACATGATGCGTCGTTTCTCTTCGACGACTGGACGCTCAGTTAGAAAGTTAAACTTGGGATAAACTGCCTGGAGGACGAGTGCAATAAAGGAACTTGCGTTATCACTGAAATTACACAAGCATGAATGCGATCAGGCTGAACGCGTCCATGTCCGAGAACTCAATCTATCGTTTTGCGGTTTACGAGAACCCGCTTTATGAGGAGTACAAACCCCCGGCCAGGGACCTCATCCAGCTGCCCAGAGCCCTGCTGTACCTGCTCATGGCCGCCGTGGTGGTGGTCGCCGTTGCATATGCCATCGTGGGACATTTAATCAAAGACCTCGCGCATGACATCTTAGattgGGTTTTGGGTCCTGATGAGGAGATGTTAAAGGCCAACAGTGAGGCGGGTGATAACGGTTCAACACACATGCCCCAAGGCCTCACTCACTCCCACCCCAACGCCTTCCACGTGTGGGATCAGGACGACGTGGTCATCCCGCTGTCCCCGGAGGACAGTCCTCAGAACAGCCCTCTTCTGGCCGTCATCCCATTCATCCCTCACTTCTTTCCAGCCTCTCACAGTGTGCTCAACAGCCCCTCACTGCCACAGCCAGGAGAAAACAGGAGTCCCACTAAAACCACGCAAGACGCCTACGTCTTTCCTACACCCAAAATCACCAGACAAAGCTCCACTTTTTCACATCATTCCGTATCATTCCACGACATGTAAAGGTTACATGACTGAACGCAAACTAAAGTGAAGTATATAAAAAACATACACTACCTGAgtagtcttgtcgttgatcccagttgtaagagcaacaaaaaatgAGGAAAAGTGGATCCTGCATGGACCCAAGTaacatagaaatcagtcaagtttggtgaaggaaaaatcatggtttggggttacattcagtatgcaggcgtgtgagagatctgcagagtggatggcaaaatcaacagcctgaggatgtaaagacatttgtgctgcccattacattacaaaacacaggagagggcaaattctttagcaggatagtgctcctcatacttcagcctccacatcaaagttcctgaaagcaaagaaggtcaaggtgctctagcaTTGGTCAGCCCAGTCATCTGACATAACTATTATTGagaatgtctggggtaagatggagaaggCATTGGAGAtcaatccaaagaatcttgatgaactctgggagtcctgcaagaacccttactttgccgttccagatgactttattaataagttatctgagtcattgcagagatgtatggatgcagtcctccaagctcatgggagtcatacacaatattaattctttttccactgcaccatgactttatattttatactgtacattatttctgttgagtgtcaagacttttgtctcgGCAAAGGCAGAACttattgtcttaattaaataataaaaaatcaagacatgatcatactttattgtggtaaaataagtgtaatctagaggcctttgcctttcatataaaccacttctgataccaaatgatcaaatagaagtcaagttgttatttgttgttcctaaaatgtgTATAggcaagacttttatcaggtagtgtacatataataattggtaaaactttacaataaggttccataTGGCAGATAAttgataacaaaaaaaaagctcgcaaaaaaagtttttgtttcagAAAGCTTGACAGATTGGTCTGATTCTGAAATAGTGTTCTGGGGCAATGCTGTGGGTTTTGAGTGTAAGACAAAATTGATCTGGCTATTTAATGTACATTTTGACCATGGCCAATTTTTGCGCAGTATATTAAATTTCACCAGACACTATTGAGTACTCTTAAAACACTTGAAATATGCTAAATATTTATGGGAGCATTTTGTGATATTATAAGCTCAACTCTGGTCGCTATTCACTCATCCGTTAtaaagatgaaaataaaaatcttttaaatctaCAGtccaaaaaaggaagaaagaattaaaacaaaacaagagaagagaagagagtaAATGACCACTTTATTTCAAGTTTTGTGGTGAACTTTCTCTTTagttggtaaaataaataatacattataaaaaaaatacaagttaatattattaactttatatattgttatttatatataaaatataactttATATTACTGctaatatttattgaaaatgaactTACAATGAACAGTTATCTGTCattagatgaataaatactgtaacaatTCAACAACCTGGATTTCATAACAGATTTGAgcaaaattgaaatatttttttgatgTGGACTCTACAAAGACTATTGCAAAATCATGCTCTATTCCATTAACCAATTTAATACACGTAAAACAACTCTTCCAACTCACGTCACAAAAGTTGTGACAAGAAGTTTACATAGCCattatattggtaacactttagtttaggtcacaattcatgccaTTAGCTACTGATTTATTATCATTAAGATATTAATTGTTCACtaattataaattcattcatttattcattttcttgtcggcttagtccctttattaatctgtggtcaccacagcggaatgaaccgccaacttatccagcacctttttacgtagcggatgcccttccagccgcaacccatctctgggaaatagtagttataaagtacgatcttattctgcatccatACCCAAAACCTAAGCCCAACCTTACTAACTAATaaaaaacagctaattagtagttcatTAAGCTAGTTGTGTTCGTTATTGGTTTGTTATtaccgtgaattgtgacctaaactaaagtgttaccattattttTTAATCGAAGGAGACAGGGGTGTTATATTTAGGTGTAATTATTGAATAATGTCATCTGCGAACTGTGGATTCAGATTTGTTTTGGATTAGCAGTTCAAACTTTTTTGAGTCAGGGAGCCAGTTTCTACAAATGAACGCATAGACAAACCTGTAAAGAATGATCAGACATTTTACATACGTCAAGTATCCagtaaatgtgaaaaatatttccATTGCAGTTTTGAATCTcctgtaaaaaaattttttttttgagaacttGCTGCAAATTCATTAGATATTTTCATTCACGCAATATGACACTAAGGTAATGAAAATGCAGCTAATgttaattacataattaattaaTGGAACATTATTGTAAATGATTACCAAACAGCTCCCCTAAAAATGaaactgtcatcatttatgtAGGatgttatattcattcattcattttgttgaattatttattttaagtaatgaTCGAACATATTCAGCTTAGCATGATCCATTTCTTTAAATAGAATTAAAAAATAGATGGAACATTTTCTTTGACAAACACCCAACGAGGGTGTTGACTACATTTACCATCGCACCCTTTGCTTTTCTACTCGTCTGCAAAAGCTGGGCTTTGTCCTGTGGAGTGTGTGAGGATCAGTGACCTGTCCTCAAAATAGGTGCTGGTGACCACAAACAACCTCAATAAGCAGAGAGCCGTATCAGTCCAAGCCGCATTACCGGAACGTGGTTGCCCGGTAAAACAGGGACAAGGCAGGACTGCAAAATCACGTCTGTAGGATTGTGCCAATTCAGGAGAAGCCTTCCCTCCTGGAGCCAAAATGCATCCTCGGAACATATCTGAACCATCGGATCGTTCACTTTGACGCAGGATAACCAGCGTTTGCAGTTCATGGATTTGCACGGAAATATTTTCGATTTTGTGCTTTATTTCAATAACCAGTGAAACTGGATTGGATTCAAAATCCAAAGTGTTACCGTCAAGAAACATTGCAGGAGTGTGTCCATGCTCCTAAAtaaacactttcaaagtgttAAATGCACGCAaataaacaaaagtctttctttCAAAAGGACTTTTTATTTTCAACAAACATTGTTAATAGTGACACCGCTGGTCATTAAGTGAACTGCAGCCAGCAACTTATTGTGCACGGAGACTGAATGAGATTCAATGTCCTAAAATGTTCAAAGGGGGTTAAAAAGAAGTTGGAAACGCTGTGATATAATGATAAAGAACATGTGAAGAGCAACATTTATGAATATGTATATAGTATGTGTTTCCTCTCTATAACATAAGCACAAAACACAACTGGTGAGAAAACAGCAGTAAAGAAAGCATCTGTTCATAGTGATATAGATATGTTTGCTCAAGCTGTGAAACTCACCATCAGTGTCAACGTCATTTAAATGACAAAGTCTGTAATGATTACAGTAGTGATTATTAATGATATATCTATAATGATATATTCACAGGGGTGCACTTAATGGTCGGAATACACGATTTAAATGAAAATTGTGCACTATATACGGCACTAGTGAAGCACTTTTGTGGACCAATTCCGCTTCCTCATGAATACATATGAGGAACAAGCACCAACTCCAGCTTGATGTTGAGAACATTGATGATGTGCTCCCCTGTATATACAGATGCTTTTTATTCATCAAACATGGATATTATTGTACAGAATACCTGTATCTGCATTATCTTAAGCATTTCATGTATCATAGAATGcaaataaatatcaattaataCTTAAAGT

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0048489 synaptic vesicle transport biological_process
GO:0009581 detection of external stimulus biological_process
GO:0009582 detection of abiotic stimulus biological_process
GO:0009583 detection of light stimulus biological_process
GO:0009314 response to radiation biological_process
GO:0007267 cell-cell signaling biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0104004 cellular response to environmental stimulus biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0009416 response to light stimulus biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0036465 synaptic vesicle recycling biological_process
GO:0097479 synaptic vesicle localization biological_process
GO:0097480 establishment of synaptic vesicle localization biological_process
GO:0009449 gamma-aminobutyric acid biosynthetic process biological_process
GO:0003008 system process biological_process
GO:0051606 detection of stimulus biological_process
GO:0071214 cellular response to abiotic stimulus biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0071478 cellular response to radiation biological_process
GO:0071482 cellular response to light stimulus biological_process
GO:0140238 presynaptic endocytosis biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0031226 intrinsic component of plasma membrane cellular_component
GO:0042995 cell projection cellular_component
GO:0001750 photoreceptor outer segment cellular_component
GO:0043005 neuron projection cellular_component
GO:0030424 axon cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0044459 obsolete plasma membrane part cellular_component
GO:0070032 synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex cellular_component
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:1905360 GTPase complex cellular_component
GO:0071944 cell periphery cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0097730 non-motile cilium cellular_component
GO:0097731 9+0 non-motile cilium cellular_component
GO:0097733 photoreceptor cell cilium cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0019905 syntaxin binding molecular_function
GO:0004351 glutamate decarboxylase activity molecular_function
GO:0008020 G protein-coupled photoreceptor activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062364 True 4681 lncRNA 0.38 2 8339271 8346941

Neighbor

gene id symbol gene type direction distance location
XLOC_031838 gcdha coding upstream 8694 8314451 ~ 8330577 (+)
XLOC_031837 NA coding upstream 67868 8264764 ~ 8271403 (+)
XLOC_031836 nfil3-5 coding upstream 159229 8172227 ~ 8180042 (+)
XLOC_031835 nfil3-3 coding upstream 184405 8153813 ~ 8154866 (+)
XLOC_031834 klf1 coding upstream 198313 8129543 ~ 8140958 (+)
XLOC_031840 NA coding downstream 103370 8450311 ~ 8453642 (+)
XLOC_031841 ube2g2 coding downstream 251487 8598428 ~ 8609395 (+)
XLOC_031842 tspeara coding downstream 275287 8622228 ~ 8650321 (+)
XLOC_031843 usp40 coding downstream 305369 8652310 ~ 8684070 (+)
XLOC_031844 CU571254.1 coding downstream 344467 8691408 ~ 8691993 (+)
XLOC_031828 AL953886.1 non-coding upstream 885440 7453355 ~ 7453831 (+)
XLOC_031826 AL953886.2 non-coding upstream 903571 7429311 ~ 7435700 (+)
XLOC_031820 NA non-coding upstream 1130642 7207593 ~ 7208629 (+)
XLOC_031817 AL929341.1 non-coding upstream 1459222 6879927 ~ 6880049 (+)
XLOC_031845 CR954285.2 non-coding downstream 358208 8705149 ~ 8997996 (+)
XLOC_031846 CR954285.1 non-coding downstream 424535 8771476 ~ 8771596 (+)
XLOC_031851 NA non-coding downstream 816066 9163007 ~ 9173106 (+)

Expression


Co-expression Network