XLOC_003192 (tax1bp3)


Basic Information

Item Value
gene id XLOC_003192
gene name tax1bp3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 6136220 ~ 6145158 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006297
GGGTGTGTGTATGAGTAATGCAGCCCAGCCCCAACATGACACACACATAGCCAAAGGGGAGGAACCGAACACCCTAACATTATTATCAGAGAAAAATCACAGAAATAAAGCCCGACAGTTCCAGCAGATTTAACAACTTTTTAAGCAGAAGAAAATGTCGTTTATACCTGGTCAGCCCGTCACAGCTGTCGTGCAACGAATTGAGATTCTCAAACTACGTGATGGTGACAATCTAATATTAGGATTTAGCATTGGAGGAGGAATCGACCAAGATCCAAGCCAGAATCCATTTTCTGAAGATAAAGCAGACAAGGGAATCTATGTCACACGAGTATCTGAAGGTGGACCTGCAGAAGTGGCTGGTCTCAGGGTGGGAGACAAAATCATGCAGGTGAATGGCTGGGACATGACCATGGTGACGCATGATCAGGCACGAAAAAGGCTCACCAAGAAGAAAGAAGATGTGGTCAGGCTGCTTATCTCTAGAAAATCCCTAGAGGAAGTAGTCAGACAGTCCATGATGCAACGCTAATGCAAATCCCAAACAAACTCATTTGAGCTAATTGAATGTCCTTATTGGTTAATCACATGTTCAAAGCATGTTggaactaataaaaaaaacagcctcCCTCAGCCAAAGAGCGAAGCCAAGAACACTTCATATGGACTATCAAGGACTTTCAGTCAATCAGAAAAATGTTTCGTATCAATTTGATGTACTTAACTTTTATTATACAAGTATTTGCGCGAATGATCAGTCACAGAGTACATTGTAAAGACTGATGGATGCATTTGCAATGTGTTATACTAATTTCAATGTATGAATACTTTATACCTTTATACCAAACGACTACACTGTCTGTACTGCATATACTCCTGGATGTATCATGTACTCCatatcatttcattcattggTTTCAAGGGCTACAGTGAATTGTGTTCACCTCATTTCTCTTTGCTTCATTAACATATACACCTTTACTTCTCTTAAAGCCTGCTTATTATCATTGTGTTATAACAGGCAGAATACGTCTGTACTTTAATGACCACTAACTACTTTACTTTTCTTCGGTTTTTGTAACTTTGACAActgtttttgtaattaattaacaCTATTGCCTTCATCTAGATTGGGCACAAGTGAGAACACTGCAATTTTGTATTACATAGGCTTCTGTCATATTTCCTATTGATAATGTTTTTGATAACTGATTTTTTGGCGTTTGATTGTATGCGGATATATTTTCACATCGAATAAAGGAATATTCTAGCA
>TCONS_00006298
AACATTATTATCAGAGAAAAATCACAGAAATAAAGCCCGACAGTTCCAGCAGATTTAACAACTTTTTAAGCAGAAGAAAATGTCGTTTATACCTGGTCAGCCCGTCACAGCTGTCGTGCAACGAATTGAGATTCTCAAACTACGTGATGGTGACAATCTAATATTAGGATTTAGCATTGGAGGAGGAATCGACCAAGATCCAAGCCAGAATCCATTTTCTGAAGATAAAGCAGACAAGGGAATCTATGTCACACGAGTATCTGAAGGTGGACCTGCAGAAGTGGCTGGTCTCAGGGTGGGAGACAAAATCATGCAGGTGAGAAATCCAAAACTGTCAGGTTAAGAGTTACTGGGGTTTTGTTCAGAGGCCTGTTGCATAAAACCAGTTGAACAAACTCTGGGTTGCAAGAGTACATTTTGGGTTGACAAATCCAAAGAAATGCAAACTGGTTAAGATCAGGTTCAGTTGTTTCACAAAGCTTGATATAAACCTTCTCTGTTAACGCAGAGTAAGTCATTAACTTTTGAGGGTGTAAAAGTGTGACacatgcagcaaacagccaatcacagaacACATTTGAGTGTCATGGAGCACTCACACTACACTATTCGAACTGTGCCcaggatcgtttgagaagtgtgagtgctctgaatcgggctcaggcatggttcagttggctggccctggcccggttggaagaggtgtgccagagcgcgcttcccttgggctttggcgtggtacgcttgtagtgtgagtgcaaggCATGCCTGAAACTGaggacgagacgtgacttttaagggactgtttcatatggatttatcaatcattcttactgttcgaTAAACATGactgttgtagattattaaagacgcaaaaacctcactgcacgacagctgcacctccAGCAAATCTCCTAAAacatgcagcacgaggacttcatGATTGTTTC
>TCONS_00006299
GAAATAAAGCCCGACAGTTCCAGCAGATTTAACAACTTTTTAAGCAGAAGAAAATGTCGTTTATACCTGGTCAGCCCGTCACAGCTGTCGTGGTAGTGCTGCCATATATGGTTACACACAGCTGTGCCGTGGGATGTGTCTTAAATCATACAACGAATTGAGATTCTCAAACTACGTGATGGTGACAATCTAATATTAGGATTTAGCATTGGAGGAGGAATCGACCAAGATCCAAGCCAGAATCCATTTTCTGAAGATAAAGCAGACAAGGGAATCTATGTCACACGAGTATCTGAAGGTGGACCTGCAGAAGTGGCTGGTCTCAGGGTGGGAGACAAAATCATGCAGGTGAATGGCTGGGACATGACCATGGTGACGCATGATCAGGCACGAAAAAGGCTCACCAAGAAGAAAGAAGATGTGGTCAGGCTGCTTATCTCTAGAAAATCCCTAGAGGAAGTAGTCAGACAGTCCATGATGCAACGCTAATGCAAATCCCAAACAAACTCATTTGAGCTAATTGAATGTCCTTATTGGTTAATCACATGTTCAAAGCATGTTggaactaataaaaaaaacagcctcCCTCAGCCAAAGAGCGAAGCCAAGAACACTTCATATGGACTATCAAGGACTTTCAGTCAATCAGAAAAATGTTTCGTATCAATTTGATGTACTTAACTTTTATTATACAAGTATTTGCGCGAATGATCAG

Function

symbol description
tax1bp3 Acts upstream of or within convergent extension involved in axis elongation. Predicted to be located in cytoplasm; nucleus; and plasma membrane. Is expressed in brain; eye; heart; and immature eye. Orthologous to human TAX1BP3 (Tax1 binding protein 3).

GO:

id name namespace
GO:0007266 Rho protein signal transduction biological_process
GO:0090630 activation of GTPase activity biological_process
GO:2000009 negative regulation of protein localization to cell surface biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-040426-2830 Acts upstream of or within convergent extension involved in axis elongation. Predicted to be located in cytoplasm; nucleus; and plasma membrane. Is expressed in brain; eye; heart; and immature eye. Orthologous to human TAX1BP3 (Tax1 binding protein 3).

Ensembl:

ensembl_id ENSDARG00000059177

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006297 False 1273 mRNA 0.38 4 6136220 6145158
TCONS_00006298 False 950 lncRNA 0.44 3 6136295 6141322
TCONS_00006299 True 715 processed_transcript 0.42 5 6136321 6144643

Neighbor

gene id symbol gene type direction distance location
XLOC_003191 nr2f6b coding upstream 1637 6115621 ~ 6134583 (+)
XLOC_003190 ushbp1 coding upstream 35116 6076646 ~ 6101104 (+)
XLOC_003189 CT573239.2 coding upstream 61437 6069875 ~ 6074783 (+)
XLOC_003188 gtpbp3 coding upstream 98461 6009984 ~ 6037759 (+)
XLOC_003187 NA coding upstream 169831 5955265 ~ 5966389 (+)
XLOC_003193 slc1a6 coding downstream 7485 6152643 ~ 6175057 (+)
XLOC_003194 BX248501.2 coding downstream 24154 6169312 ~ 6205367 (+)
XLOC_003195 BX248501.1 coding downstream 60811 6205969 ~ 6224120 (+)
XLOC_003196 ctns coding downstream 136489 6281647 ~ 6293709 (+)
XLOC_003197 ranbp3a coding downstream 150212 6295370 ~ 6316718 (+)
XLOC_003250 BX324177.11 misc downstream 5200645 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 5227728 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 5241204 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 5272875 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 5284235 11429393 ~ 11429689 (+)
XLOC_003180 NA non-coding upstream 533499 5602340 ~ 5602721 (+)
XLOC_003178 CU855733.1 non-coding upstream 604644 5531443 ~ 5531576 (+)
XLOC_003176 CR559931.1 non-coding upstream 654336 5481753 ~ 5481884 (+)
XLOC_003198 AL840638.1 non-coding downstream 177840 6322998 ~ 6324302 (+)
XLOC_003199 AL840638.2 non-coding downstream 182820 6327978 ~ 6328093 (+)
XLOC_003203 CU062501.1 non-coding downstream 298299 6443457 ~ 6444163 (+)
XLOC_003205 NA non-coding downstream 315466 6460624 ~ 6513018 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location