XLOC_003195 (BX248501.1)


Basic Information

Item Value
gene id XLOC_003195
gene name BX248501.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 6205969 ~ 6224120 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006303
GGTAGGTTAAGGCGACATTACAAGCTCGTATTACACCCCTCCACatcagtatttatttatgctgGTAGGACAACGTGATGGATATGCTAACGTTACCTATCGGTTTATATTTTGATTACACACTATGCTACCTATTTTTTGAATGGAAAAATCTGACAGGATAGGACTTATCGACGGAACACTTGCcaggcataaaacaaaaacagtgtaATCATGACAGACATACAAAACTGGAATAAAACACTTGGGGAGAGGGGTAAACTCAGGCAGCACGTGTACGTGTGTCTCACCGTAGCTTTAGCTATGATGAACACGGACTCTTGACTCGCCAGAGTCACATCCGGATCTGCTTTCATCAGGGTTTTAATGCGGGACAGCGGAAGCCTGGCGAGCCGGTGTTGCTGTGCGCCCGCGGTGGGCCCGGTTTGCCCGCTCCCCGCGTCTTCCTCCGGCTCGGTGCCCCGGGGCTCTTCTTCAGCCCCGCTGCGGTCCAACTCCGATTCCGCGGGAGCTGCAGACGCGGTCGCCGCCATCGACGCACAAAAACTCTCAACCGAACGCGCTGCTGTGAACCGAAAGCAGATAATCTAATCCTCTCCCGCCAAATCTGACTGTAAACACAACCTAGAGGAGGACGGCGGAAACCACGTCACTGCACGACGTCATGCTAGCGGGTCAACTCATTTCACTGAGTAAGGTACCAAAACACTAAATATCTGGGCAAAGCGGCACGCAAAGAAAGGAAAGAATGAGGCAGCAGCACAACCCGTTCAGAAAGAGGCAGAAGCACGAAAGCCTCCGGTTCTCACACCCGAACAACGAGCAAAGCAGACAGCCTTCGAGAGGGTCCTCTATGACATGTCCCACAACGACCGGGTCATCAATGACATCATTCTGGGCCGCAGGATAGGTTTCTACGATCTCAGAGGAGAAATAGGGACTGGAAATTTCTCCCAGGTCAAACTTGCTGTTCATGAGTTGACCAAAGAGCGTGTTGCAGTCAAAATTCTTAACAAGGCACGTCTCGACAAGAAGTCGCAGAATTTATTTGCCTCAGAGATCATGTGTATGGAAAAACTCTCCCATCCAAACATCGTTCGTCTGTATGAAGTGCTTGAGACGGGTAAGCATGTGTACCTCGCTATGGAGTACGGCAGCGGAGGCGATCTGTTCTCACGCATCACCACCAGAGGACGCCTGTCAGACCTGGAGAGCAAACTCATCTTTGCCCAGATCGTCTCAGCCATTAAATACATGCATGAAATCAACATCATCCACCGTGACCTGAAAGCCGAAAATATTTTTTACACCACATGCTACTGCATCAAAGTGGGCGACTTTGGTTTTAGTGTGTTTAGTGAGCCCGGCGAAACTCTCACCACGTTTTGTGGTTCCCCTCCATATGCAGCTCCCGAGCTGTTCAGGGACAAGAGCTACATGGGCCGTTATGTGGACGTCTGGGCGCTGGGCGTCCTCCTCTACTTCATGGTAACCGCCACCATGCCTTTCTTCGCTGACAACTTAGGCCGACTGAAGCGCTGCATCCTGCAGGGGGCATACAGCATCCCGTCCTATGTCCCGGACTCCTGCCAGCTGGCCATCAAGGGGATGCTGAGACCTGTACCTGTGGACCGCAGCACACTGTCACAGCTGATGATCTGCTCCTGGATGCAGTGCATCGAATACCCCAAACCTTACCCCACATTCAGCGGGACACCCGGCTATCTGGCTGACCCTGCCAAGAGCCTGTGTGTGGAGGAGCAGGAGGTAAAGTCAGCTCTAAGCGAGCTGGGTTTAAGCGGGACACATCTGCAGAATAACACCTGCACTGACTGCCGCAGCCCGATCACAGGAGCCTACCGTATCCTGCTGCACCGCATCCAGAAGAGGAGATCCGTGGAGGCAGTGGGATATTCAGGTCTCTACCCAGAGGATTTCAGTAGCAAGAAATACTGGGCCAACAGCCCGACGGCAAAACACAATCCTTCCGCAGTGTGTAATGTCCTGTGAAGACCTTATTTTGAAACGGATTATGTGAATGAGGCCACATTACAGGAACTGGTGAATTGAAATTCATGCAATTATTTCCAGTTTAAGGGTTAGTTCAACCAAAATTTACatttctgtaattaattactcTCCATCTTGTCGTTTTCATCCAATGAGACCTTTATTtaacttcaaaacacaaattaaaatattttgaatgaaatcagagagctccatCATCCTCCGTAGATAACAATGGTTCTGATATATTCAATCAAGacaaggaaccaaaaacattccaTGCGACTTCAGTGGTTTAAATGTGATAATATGAacctttaaaaacacttttgtgtgccaaaaaactctgaaaataagtcacatggaatgttttgataatgtttttgtttcatttcctGGACTCTGATAGTCTCTTGACTGTTTCTGACTGTAGAGAGTTCtcgaatttcatctaaaatatcttaatgaaggtctcagggggttGGAATGACAAGagcgagtaattaataacagaattgtaatgttttttgCAGGAACTAACACTTTAATCCCATGTTCACCATCGAGGAATGATCACAAGATCAGTCTCTTACATTAGgtactgtttttttaatatatcaatttaaaagCTGACCTTTATCagtgttttaaatgtgatttcaAAGCAATGTCAGATGATTACAAGTCTCTTTTTATCAAATCAACAACATACAGAAAAAACAACACGTTTAGACCTGTGCAGCCAGATTCACAAAAGAAATGCAACAGTAAACATCAAAAACACATGGCCCCTGATtgcgaaaataaatgaattatgagtg
>TCONS_00006304
CGAGCCGGTGTTGCTGTGCGCCCGCGGTGGGCCCGGTTTGCCCGCTCCCCGCGTCTTCCTCCGGCTCGGTGCCCCGGGGCTCTTCTTCAGCCCCGCTGCGGTCCAACTCCGATTCCGCGGGAGCTGCAGACGCGGTCGCCGCCATCGACGCACAAAAACTCTCAACCGAACGCGCTGCTGTGAACCGAAAGCAGATAATCTAATCCTCTCCCGCCAAATCTGACTGTAAACACAACCTAGAGGAGGACGGCGGAAACCACGTCACTGCACGACGTCATGCTAGCGGGTCAACTCATTTCACTGAGTAAGGTACCAAAACACTAAATATCTGGGCAAAGCGGCACGCAAAGAAAGGAAAGAATGAGGCAGCAGCACAACCCGTTCAGAAAGAGGCAGAAGCACGAAAGCCTCCGGTTCTCACACCCGAACAACGAGCAAAGCAGACAGCCTTCGAGAGGGTCCTCTATGACATGTCCCACAACGACCGGGTCATCAATGACATCATTCTGGGCCGCAGGATAGGTTTCTACGATCTCAGAGGAGAAATAGGGACTGGAAATTTCTCCCAGGTCAAACTTGCTGTTCATGAGTTGACCAAAGAGCGTGTTGCAGTCAAAATTCTTAACAAGGCACGTCTCGACAAGAAGTCGCAGAATTTATTTGCCTCAGAGATCATGTGTATGGAAAAACTCTCCCATCCAAACATCGTTCGTCTGTATGAAGTGCTTGAGACGGGTAAGCATGTGTACCTCGCTATGGAGTACGGCAGCGGAGGCGATCTGTTCTCACGCATCACCACCAGAGGACGCCTGTCAGACCTGGAGAGCAAACTCATCTTTGCCCAGATCGTCTCAGCCATTAAATACATGGTAAGAACATCAGGGCCTCGTCCTTCTCTGACTTGCCAATGTTTCCGCTTTTCATTAATGCTGCCTGTAAAGACAAGTTAGGAATTTGAACAAAGCCCTAATCTGAAATGTTATAGGGATAGTTCAACTATAAAAATTACAGTACTCTTGT
>TCONS_00006305
ATGAAGGATCCACAGCTACCAGGTACCAAAACACTAAATATCTGGGCAAAGCGGCACGCAAAGAAAGGAAAGAATGAGGCAGCAGCACAACCCGTTCAGAAAGAGGCAGAAGCACGAAAGCCTCCGGTTCTCACACCCGAACAACGAGCAAAGCAGACAGCCTTCGAGAGGGTCCTCTATGACATGTCCCACAACGACCGGGTCATCAATGACATCATTCTGGGCCGCAGGATAGGTTTCTACGATCTCAGAGGAGAAATAGGGACTGGAAATTTCTCCCAGGTCAAACTTGCTGTTCATGAGTTGACCAAAGAGCGTGTTGCAGTCAAAATTCTTAACAAGGCACGTCTCGACAAGAAGTCGCAGAATTTATTTGCCTCAGAGATCATGTGTATGGAAAAACTCTCCCATCCAAACATCGTTCGTCTGTATGAAGTGCTTGAGACGGGTAAGCATGTGTACCTCGCTATGGAGTACGGCAGCGGAGGCGATCTGTTCTCACGCATCACCACCAGAGGACGCCTGTCAGACCTGGAGAGCAAACTCATCTTTGCCCAGATCGTCTCAGCCATTAAATACATGCATGAAATCAACATCATCCACCGTGACCTGAAAGCCGAAAATATTTTTTACACCACATGCTACTGCATCAAAGTGGGCGACTTTGGTTTTAGTGTGTTTAGTGAGCCCGGCGAAACTCTCACCACGTTTTGTGGTTCCCCTCCATATGCAGCTCCCGAGCTGTTCAGGGACAAGAGCTACATGGGCCGTTATGTGGACGTCTGGGCGCTGGGCGTCCTCCTCTACTTCATGGTAACCGCCACCATGCCTTTCTTCGCTGACAACTTAGGCCGACTGAAGCGCTGCATCCTGCAGGGGGCATACAGCATCCCGTCCTATGTCCCGGACTCCTGCCAGCTGGCCATCAAGGGGATGCTGAGACCTGTACCTGTGGACCGCAGCACACTGTCACAGCTGATGATCTGCTCCTGGATGCAGTGCATCGAATACCCCAAACCTTACCCCACATTCAGCGGGACACCCGGCTATCTGGCTGACCCTGCCAAGAGCCTGTGTGTGGAGGAGCAGGAGGTAAAGTCAGCTCTAAGCGAGCTGGGTTTAAGCGGGACACATCTGCAGAATAACACCTGCACTGACTGCCGCAGCCCGATCACAGGAGCCTACCGTATCCTGCTGCACCGCATCCAGAAGAGGAGATCCGTGGAGGCAGTGGGATATTCAGGTCTCTACCCAGAGGATTTCAGTAGCAAGAAATACTGGGCCAACAGCCCGACGGCAAAACACAATCCTTCCGCAGTGTGTAATGTCCTGTGA
>TCONS_00006306
ATGCCACGTGAAACTGGTACCAAAACACTAAATATCTGGGCAAAGCGGCACGCAAAGAAAGGAAAGAATGAGGCAGCAGCACAACCCGTTCAGAAAGAGGCAGAAGCACGAAAGCCTCCGGTTCTCACACCCGAACAACGAGCAAAGCAGACAGCCTTCGAGAGGGTCCTCTATGACATGTCCCACAACGACCGGGTCATCAATGACATCATTCTGGGCCGCAGGATAGGTTTCTACGATCTCAGAGGAGAAATAGGGACTGGAAATTTCTCCCAGGTCAAACTTGCTGTTCATGAGTTGACCAAAGAGCGTGTTGCAGTCAAAATTCTTAACAAGGCACGTCTCGACAAGAAGTCGCAGAATTTATTTGCCTCAGAGATCATGTGTATGGAAAAACTCTCCCATCCAAACATCGTTCGTCTGTATGAAGTGCTTGAGACGGGTAAGCATGTGTACCTCGCTATGGAGTACGGCAGCGGAGGCGATCTGTTCTCACGCATCACCACCAGAGGACGCCTGTCAGACCTGGAGAGCAAACTCATCTTTGCCCAGATCGTCTCAGCCATTAAATACATGCATGAAATCAACATCATCCACCGTGACCTGAAAGCCGAAAATATTTTTTACACCACATGCTACTGCATCAAAGTGGGCGACTTTGGTTTTAGTGTGTTTAGTGAGCCCGGCGAAACTCTCACCACGTTTTGTGGTTCCCCTCCATATGCAGCTCCCGAGCTGTTCAGGGACAAGAGCTACATGGGCCGTTATGTGGACGTCTGGGCGCTGGGCGTCCTCCTCTACTTCATGGTAACCGCCACCATGCCTTTCTTCGCTGACAACTTAGGCCGACTGAAGCGCTGCATCCTGCAGGGGGCATACAGCATCCCGTCCTATGTCCCGGACTCCTGCCAGCTGGCCATCAAGGGGATGCTGAGACCTGTACCTGTGGACCGCAGCACACTGTCACAGCTGATGATCTGCTCCTGGATGCAGTGCATCGAATACCCCAAACCTTACCCCACATTCAGCGGGACACCCGGCTATCTGGCTGACCCTGCCAAGAGCCTGTGTGTGGAGGAGCAGGAGGTAAAGTCAGCTCTAAGCGAGCTGGGTTTAAGCGGGACACATCTGCAGAATAACACCTGCACTGACTGCCGCAGCCCGATCACAGGAGCCTACCGTATCCTGCTGCACCGCATCCAGAAGAGGAGATCCGTGGAGGCAGTGGGATATTCAGGTCTCTACCCAGAGGATTTCAGTAGCAAGAAATACTGGGCCAACAGCCCGACGGCAAAACACAATCCTTCCGCAGTGTGTAATGTCCTGTGA
>TCONS_00008531
attacatacatttttattaacagaAGTAATTTGACTTCACTgtcttatccaAGGTACCAAAACACTAAATATCTGGGCAAAGCGGCACGCAAAGAAAGGAAAAAAGAGGCAGAAGCACGAAAGCCTCCGGTTCTCACACCCGAACAACGAGCAAAGCAGACAGCCTTCGAGAGGGTCCTCTATGACATGTCCCACAACGACCGGGTCATCAATGACATCATTCTGGGCCGCAGGATAGGTTTCTACGATCTCAGAGGAGAAATAGGGACTGGAAATTTCTCCCAGGTCAAACTTGCTGTTCATGAGTTGACCAAAGAGCGTGTTGCAGTCAAAATTCTTAACAAGGCACGTCTCGACAAGAAGTCGCAGAATTTATTTGCCTCAGAGATCATGTGTATGGAAAAACTCTCCCATCCAAACATCGTTCGTCTGTATGAAGTGCTTGAGACGGGTAAGCATGTGTACCTCGCTATGGAGTACGGCAGCGGAGGCGATCTGTTCTCACGCATCACCACCAGAGGACGCCTGTCAGACCTGGAGAGCAAACTCATCTTTGCCCAGATCGTCTCAGCCATTAAATACATGCATGAAATCAACATCATCCACCGTGACCTGAAAGCCGAAAATATTTTTTACACCACATGCTACTGCATCAAAGTGGGCGACTTTGGTTTTAGTGTGTTTAGTGAGCCCGGCGAAACTCTCACCACGTTTTGTGGTTCCCCTCCATATGCAGCTCCCGAGCTGTTCAGGGACAAGAGCTACATGGGCCGTTATGTGGACGTCTGGGCGCTGGGCGTCCTCCTCTACTTCATGGTAACCGCCACCATGCCTTTCTTCGCTGACAACTTAGGCCGACTGAAGCGCTGCATCCTGCAGGGGGCATACAGCATCCCGTCCTATGTCCCGGACTCCTGCCAGCTGGCCATCAAGGGGATGCTGAGACCTGTACCTGTGGACCGCAGCACACTGTCACAGCTGATGATCTGCTCCTGGATGCAGTGCATCGAATACCCCAAACCTTACCCCACATTCAGCGGGACACCCGGCTATCTGGCTGACCCTGCCAAGAGCCTGTGTGTGGAGGAGCAGGAGGTAAAGTCAGCTCTAAGCGAGCTGGGTTTAAGCGGGACACATCTGCAGAATAACACCTGCACTGACTGCCGCAGCCCGATCACAGGAGCCTACCGTATCCTGCTGCACCGCATCCAGAAGAGGAGATCCGTGGAGGCAGTGGGATATTCAGGTCTCTACCCAGAGGATTTCAGTAGCAAGAAATACTGGGCCAACAGCCCGACGGCAAAACACAATCCTTCCGCAGTGTGTAATGTCCTGTGA
>TCONS_00008385
AAAGAGGCAGAAGCACGAAAGCCTCCGGTTCTCACACCCGAACAACGAGCAAAGCAGACAGCCTTCGAGAGGGTCCTCTATGACATGTCCCACAACGACCGGGTCATCAATGACATCATTCTGGGCCGCAGGATAGGTTTCTACGATCTCAGAGGAGAAATAGGGACTGGAAATTTCTCCCAGGTCAAACTTGCTGTTCATGAGTTGACCAAAGAGCGTGTTGCAGTCAAAATTCTTAACAAGGCACGTCTCGACAAGAAGTCGCAGAATTTATTTGCCTCAGAGATCATGTGTATGGAAAAACTCTCCCATCCAAACATCGTTCGTCTGTATGAAGTGCTTGAGACGGGTAAGCATGTGTACCTCGCTATGGAGTACGGCAGCGGAGGCGATCTGTTCTCACGCATCACCACCAGAGGACGCCTGTCAGACCTGGAGAGCAAACTCATCTTTGCCCAGATCGTCTCAGCCATTAAATACATGCATGAAATCAACATCATCCACCGTGACCTGAAAGCCGAAAATATTTTTTACACCACATGCTACTGCATCAAAGTGGGCGACTTTGGTTTTAGTGTGTTTAGTGAGCCCGGCGAAACTCTCACCACGTTTTGTGGTTCCCCTCCATATGCAGCTCCCGAGCTGTTCAGGGACAAGAGCTACATGGGCCGTTATGTGGACGTCTGGGCGCTGGGCGTCCTCCTCTACTTCATGGTAACCGCCACCATGCCTTTCTTCGCTGACAACTTAGGCCGACTGAAGCGCTGCATCCTGCAGGGGGCATACAGCATCCCGTCCTATGTCCCGGACTCCTGCCAGCTGGCCATCAAGGGGATGCTGAGACCTGTACCTGTGGACCGCAGCACACTGTCACAGCTGATGATCTGCTCCTGGATGCAGTGCATCGAATACCCCAAACCTTACCCCACATTCAGCGGGACACCCGGCTATCTGGCTGACCCTGCCAAGAGCCTGTGTGTGGAGGAGCAGGAGGTAAAGTCAGCTCTAAGCGAGCTGGGTTTAAGCGGGACACATCTGCAGAATAACACCTGCACTGACTGCCGCAGCCCGATCACAGGAGCCTACCGTATCCTGCTGCACCGCATCCAGAAGAGGAGATCCGTGGAGGCAGTGGGATATTCAGGTCTCTACCCAGAGGATTTCAGTAGCAAGAAATACTGGGCCAACAGCCCGACGGCAAAACACAATCCTTCCGCAGTGTGTAATGTCCTGTGAAGACCTTATTTTGAAACGGATTATGTGAATGAGGCCACATTACAGGAACTGGTGAATTGAAATTCATGCAATTATTTCCAGTTTAAGGGTTAGTTCAACCAAAATTTACatttctgtaattaattactcTCCATCTTGTCGTTTTCATCCAATGAGACCTTTATTtaacttcaaaacacaaattaaaatattttgaatgaaatcagagagctccatCATCCTCCGTAGATAACAATGGTTCTGATATATTCAATCAAGacaaggaaccaaaaacattccaTGCGACTTCAGTGGTTTAAATGTGATAATATGAacctttaaaaacacttttgtgtgccaaaaaactctgaaaataagtcacatggaatgttttgataatgtttttgtttcatttcctGGACTCTGATAGTCTCTTGACTGTTTCTGACTGTAGAGAGTTCtcgaatttcatctaaaatatcttaatgaaggtctcagggggttGGAATGACAAGagcgagtaattaataacagaattgtaatgttttttgCAGGAACTAACACTTTAATCCCATGTTCACCATCGAGGAATGATCACAAGATCAGTCTCTTACATTAGgtactgtttttttaatatatcaatttaaaagCTGACCTTTATCagtgttttaaatgtgatttcaAAGCAATGTCAGATGATTACAAGTCTCTTTTTATCAAATCAACAACATACAGAAAAAACAACACGTTTAGACCTGTGCAGC

Function

GO:

id name namespace
GO:0034440 lipid oxidation biological_process
GO:0009056 catabolic process biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0044242 cellular lipid catabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:0030258 lipid modification biological_process
GO:0019395 fatty acid oxidation biological_process
GO:0016042 lipid catabolic process biological_process
GO:0005737 cytoplasm cellular_component

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000074519

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006303 False 2831 lncRNA 0.47 4 6205969 6224120
TCONS_00006304 False 1020 lncRNA 0.51 3 6206357 6220937
TCONS_00006305 False 1335 processed_transcript 0.52 4 6209170 6223299
TCONS_00006306 False 1329 processed_transcript 0.52 4 6209911 6223299
TCONS_00008531 False 1338 lncRNA 0.51 5 6213943 6223299
TCONS_00008385 True 1979 lncRNA 0.45 3 6214094 6224042

Neighbor

gene id symbol gene type direction distance location
XLOC_003194 BX248501.2 coding upstream 602 6169312 ~ 6205367 (+)
XLOC_003193 slc1a6 coding upstream 30912 6152643 ~ 6175057 (+)
XLOC_003192 tax1bp3 coding upstream 60811 6136220 ~ 6145158 (+)
XLOC_003191 nr2f6b coding upstream 71386 6115621 ~ 6134583 (+)
XLOC_003190 ushbp1 coding upstream 104865 6076646 ~ 6101104 (+)
XLOC_003196 ctns coding downstream 57527 6281647 ~ 6293709 (+)
XLOC_003197 ranbp3a coding downstream 71250 6295370 ~ 6316718 (+)
XLOC_003198 AL840638.1 coding downstream 98878 6322998 ~ 6324302 (+)
XLOC_003199 AL840638.2 coding downstream 103858 6327978 ~ 6328093 (+)
XLOC_003200 AL840638.3 coding downstream 150328 6374448 ~ 6378070 (+)
XLOC_003250 BX324177.11 misc downstream 5121683 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 5148766 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 5162242 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 5193913 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 5205273 11429393 ~ 11429689 (+)
XLOC_003189 CT573239.2 non-coding upstream 131186 6069875 ~ 6074783 (+)
XLOC_003187 NA non-coding upstream 239580 5955265 ~ 5966389 (+)
XLOC_003180 NA non-coding upstream 603248 5602340 ~ 5602721 (+)
XLOC_003178 CU855733.1 non-coding upstream 674393 5531443 ~ 5531576 (+)
XLOC_003176 CR559931.1 non-coding upstream 724085 5481753 ~ 5481884 (+)
XLOC_003203 CU062501.1 non-coding downstream 219337 6443457 ~ 6444163 (+)
XLOC_003205 NA non-coding downstream 236504 6460624 ~ 6513018 (+)
XLOC_003206 NA non-coding downstream 412302 6636422 ~ 6642487 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01090024_00001225_00001869 NA coding CI01090024 null 560 ~ 1869 (-)