XLOC_003197 (ranbp3a)


Basic Information

Item Value
gene id XLOC_003197
gene name ranbp3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 6295370 ~ 6316718 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006308
AGTCAGCGGAAGTAAGATGGCGGAGGAGACAGCTGAGGTGTTTTCCCTTTGATGGTTGGCAACAGAAGAGCTTGACTTGGTCCTGAGGAGGGTTCAGACAGCAGCATGGCAGATGACAATGATAAACCTGCTGTTGCTCCTCCAGTATTTGTGTTTCAGAAGGACAAAGCACAAAAGAGGTCAGCAGAGGAGTCCAGTACAGAGGATGGGGAAGACTCAGATAAAGAAGATGGCAGTTACAGCCCTGCTGCCAAAAGAGGCCGAACGTCACCATTTACACAGTTCCCACCAACTCATTCCGTGTCTAAGAATAATGTTTTCATGCCATCCAGTCTCTGTCAGTCACCAACTGAAAACTCAGACTCTGAACCTGAAGAGAAGACTGTGGGGTTTCGCCTGAAGCCCCCGACTCTGATCCACGGCCAGGCTCCGAGTGCTGGTGTCCCCAGTCCAAAACCCAAAGAAGCCCAGCGGAGCATCCTGAGGCCTCCCGTCCTGCAGCCCCCTCCGGTCAAAAGCCCCCCTCAGAACAACATAAGCAGCAACAGTTCAAATGGAGTGAAAAAGCTCTCAGATGGAGGAACAGAATGTGAAGGTCACTCAGAGGCATCCGCTGCTGGCACTCAGGAAAATTCGGAGTCATTGGACAAGAGCACTTTGGAGCCCGAAACAGATGACAAACCAGAGCAACACGGTGCCCAGATTGATGCCAGTTTTGTATTTGGAGAGAATATGAGGGACAGAGCAAAGGTGGGAAACAGTTTGGACTCCTCACAGAAAGCCGATGGCCTTCAGACAGAAAATTCTGGGGAAACTAACTACTTCTTGCAGTGCATCACTCCCAGCGCACAAAAACCTGACAGCAGCAATGCCAACAGTGTGAAGTTTGTCTTTGGACAGAACATGTTGGATCGCGTTGTGGCTCTGCCGAAATTCACCACCGATGCACCAGGAGGCAGTAGAGAGTCGGGTTCAGAGATGGGCCTGTTCAGCCAGCTTTCATCTACACAAGAGCAAACTGTGGAGAAGAGTGACAATATGAAAGAATCTCTGGAGGAGTCAGCGGCGAGACACGAAGCACACAAGCCACAGAAGTGTTTGCTAGAGCGAGTGGAGGTCCGGACAGGAGAGGAGTCTGAGAGCAATGTGCTGCAGATGCAGTGTAAATTGTTCGTGTTTGAGATGTTGTCTCAGTCGTGGGTGGAGAGAGGATGTGGAGTTCTCAGACTCAATGACAAGACATCCACCGATGACGGCACTCTACAGTCCAGATTGGTCATGCGGACTCAAGGAAGTCTTCGAGTGATCCTCAACACTAAGCTCTGGCCTCAGATGCAGGTGGATAAAGCCAGTGAGAAGAGTCTCCGGATAACAGCGATAGACACCGAGGAGCAGGGTGTCAAAGTCTTCCTCATATCTTCCAGCTCTAAGGACGCTGCCCAGCTGTTTGCGGCCCTGCATCATCGCATCCTTGCGCTGAGGAGCATCAGCGGGCAGGAGTCTGACGGTCAGCCTGCGCTTCCTGACGGAGAGATCATTCGCTTCAGTGATGACGACGAGTCCCGCACGCCTCCCACTGCGGCTACACCTGCTCCAGGTAACTCAGAGGCAGGTGTGTGTTCATCCACAGGCGACACATAGTGCTGAGTCTGTGGTTGATTTCTATTCCACAATGCCTCACTTGCAGCCCTCTGGTTAGCTCAAATACTATGCAGGTGTTTCTTTCTTCTTCAAACTCCTTCAGGTTTACTCTAGTCATGTGTTCAGCtggttttatttattgcattttaacagcaaaaaaaaaagcgcATCTTTCAGACTGGACACATAACCTTCTCAATATCATCATATTGATGAAAATGACTTTCTCTTAGCGTTTTAGTGAACAGATTTttcattctacacacaataactCGTTTATGTGAGACTTAATTATTCCATGCCCTCCTGAGTGGAAACAGGACAGAGTGAGTTAACAGAAaccaa

Function

symbol description
ranbp3a Predicted to contribute to GTPase activator activity. Predicted to be involved in protein export from nucleus. Predicted to act upstream of or within intracellular transport. Predicted to be part of nuclear pore. Predicted to be active in cytoplasm. Orthologous to several human genes including RANBP3 (RAN binding protein 3).

GO:

id name namespace
GO:0006611 protein export from nucleus biological_process
GO:0046907 intracellular transport biological_process
GO:0005634 nucleus cellular_component
GO:0005643 nuclear pore cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1132 Predicted to contribute to GTPase activator activity. Predicted to be involved in protein export from nucleus. Predicted to act upstream of or within intracellular transport. Predicted to be part of nuclear pore. Predicted to be active in cytoplasm. Orthologous to several human genes including RANBP3 (RAN binding protein 3).

Ensembl:

ensembl_id ENSDARG00000008727

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006308 True 1986 mRNA 0.49 18 6295370 6316718

Neighbor

gene id symbol gene type direction distance location
XLOC_003196 ctns coding upstream 1661 6281647 ~ 6293709 (+)
XLOC_003195 BX248501.1 coding upstream 71250 6205969 ~ 6224120 (+)
XLOC_003194 BX248501.2 coding upstream 90003 6169312 ~ 6205367 (+)
XLOC_003193 slc1a6 coding upstream 120313 6152643 ~ 6175057 (+)
XLOC_003192 tax1bp3 coding upstream 150212 6136220 ~ 6145158 (+)
XLOC_003198 AL840638.1 coding downstream 6280 6322998 ~ 6324302 (+)
XLOC_003199 AL840638.2 coding downstream 11260 6327978 ~ 6328093 (+)
XLOC_003200 AL840638.3 coding downstream 57730 6374448 ~ 6378070 (+)
XLOC_003201 FO681393.1 coding downstream 105656 6422374 ~ 6423160 (+)
XLOC_003202 VMAC coding downstream 114415 6431133 ~ 6434600 (+)
XLOC_003250 BX324177.11 misc downstream 5029085 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 5056168 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 5069644 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 5101315 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 5112675 11429393 ~ 11429689 (+)
XLOC_003189 CT573239.2 non-coding upstream 220587 6069875 ~ 6074783 (+)
XLOC_003187 NA non-coding upstream 328981 5955265 ~ 5966389 (+)
XLOC_003180 NA non-coding upstream 692649 5602340 ~ 5602721 (+)
XLOC_003178 CU855733.1 non-coding upstream 763794 5531443 ~ 5531576 (+)
XLOC_003203 CU062501.1 non-coding downstream 126739 6443457 ~ 6444163 (+)
XLOC_003205 NA non-coding downstream 143906 6460624 ~ 6513018 (+)
XLOC_003206 NA non-coding downstream 319704 6636422 ~ 6642487 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000057_04105710_04123101 RANBP3A, RANBP3 coding CI01000057 null 4105710 ~ 4123718 (+)