XLOC_003205


Basic Information

Item Value
gene id XLOC_003205
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 6460624 ~ 6513018 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008532
GTTTGTGCGTCTGACGTAGGCCGTTTCTGATTACGCATTGGAACCCCGGAAACGTCATTGACCATTTAAGGGCAAATCTAGAAGCGCCGAGCCTGTTGATTCCACTCAACACGAcgcaaaaaataacaatttaaatgaaaaatCGTCTCTGCCAGCGGTATGTGGAGAATGCGGAAACGGTGTATCTGTTTCCATAGAAGTGCAGCGTGAGCGCGGAAGCACTTTCCCACAAGGGTCAGCTGTGAGGAACATGGACTCCTGGTTATACAAACTACACAAATATGAATCTTACCGGAGGATCCCAGTGTCTCTCTAAACACCGTGTGCTGAGTTAAAGAGCAAAGTGCCAACTGACTATGATTTCCTGGAAGACAAGTATCAGGGAAGGGACACAAGAGAACGTTCCGCTGGAGCAACACAAGGTCTTCGAGTTCATTTAGATAAACCAACCACAAACTTTACTTGGAAACATGATCTGGTCTTCGATGGAGATTAATGTAACGCAGCAGGAGCATTCTGAGCACCTGCAAGTGCATAAGGGGGGGATGATCTATCATTGTCTTCATAGTATCAATACCAGTAACTACTGCAGAGTTGGAAAAGACCAGTCTGATGAGTTCACACTGACACAGATGCATTGCAAACACAGTTGCATTTATACAAGTGAGAAGCAAATGCTTTTGGATCAACAATACGAGACTTACTGTGTGTGTCTTCatgacatgtttatttattgtaaacaACAACTGACAAACAAATAACTGATCAAAATGGTTTCCTTAAATGCACTGTATGTCATGCTGGATAAAAGTGTTTGCAAAGTGCAAATTAAATACGTACAGTATAGGTAattttttgagaagtgtttatgAATGcatgggccattcttcaactacgaGCACTTGTAGCCTGGTGAAGTTCAGttaaaaaacttgttcaaaattaaaaaacataGCCACATGAGTTTAAaactattttctgtttttaaaatctgtaagagaacaaacttagataagaagagaaacattttttccatcatgaactgaacaaatgttaTTTCCACCACATCTCgatatacagcttttatttcaaaatgaaataaattacgGCAGTCgaacattgtctaagatcatttttgtatctagtttaagcaatctttccacaatatatataataattatacttttgtcaatgaaataaattagttgtatgctgaattgtac
>TCONS_00006319
GTTTGTGCGTCTGACGTAGGCCGTTTCTGATTACGCATTGGAACCCCGGAAACGTCATTGACCATTTAAGGGCAAATCTAGAAGCGCCGAGCCTGTTGATTCCACTCAACACGAcgcaaaaaataacaatttaaatgaaaaatCGTCTCTGCCAGCGGTATGTGGAGAATGCGGAAACGGTGTATCTGTTTCCATAGAAGTGCAGCGTGAGCGCGGAAGCACTTTCCCACAAGGATCCCAGTGTCTCTCTAAACACCGTGTGCTGAGTTAAAGAGCAAAGTGCCAACTGACTATGATTTCCTGGAAGACAAGTATCAGGGAAGGGACACAAGAGAACGTTCCGCTGGAGCAACACAAGGTCTTCGAGTTCATTTAGATAAACCAACCACAAACTTTACTTGGAAACATGATCTGGTCTTCGATGGAGATTAATGTAACGCAGCAGGAGCATTCTGAGCACCTGCAAGTGCATAAGGGGGGGATGATCTATCATTGTCTTCATAGTATCAATACCAGTAACTACTGCAGAGTTGGAAAAGACCAGTCTGATGAGTTCACACTGACACAGATGCATTGCAAACACAGTTGCATTTATACAAGTGAGAAGCAAATGCTTTTGGATCAACAATACGAGACTTACTGTGTGTGTCTTCatgacatgtttatttattgtaaacaACAACTGACAAACAAATAACTGATCAAAATGGTTTCCTTAAATGCACTGTATGTCATGCTGGATAAAAGTGTTTGCAAAGTGCAAATTAAATACGTACAGTATAGGTAattttttgagaagtgtttatgAATGcatgggccattcttcaactacgaGCACTTGTAGCCTGGTGAAGTTCAGttaaaaaacttgttcaaaattaaaaaacataGCCACATGAGTTTAAaactattttctgtttttaaaatctgtaagagaacaaacttagataagaagagaaacattttttccatcatgaactgaacaaatgttaTTTCCACCACATCTCgatatacagcttttatttcaaaatgaaataaattacgGCAGTCgaacattgtctaagatcatttttgtatctagtttaagcaatctttccacaatatatataataattatacttttgtcaatgaaataaattagttgtatgctgaattgtac

Function

GO:

id name namespace
GO:0009615 response to virus biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008532 False 1223 lncRNA 0.38 4 6460624 6513018
TCONS_00006319 True 1159 lncRNA 0.38 3 6460624 6513018

Neighbor

gene id symbol gene type direction distance location
XLOC_003204 gadd45ba coding upstream 2876 6456146 ~ 6457748 (+)
XLOC_003203 CU062501.1 coding upstream 16461 6443457 ~ 6444163 (+)
XLOC_003202 VMAC coding upstream 26024 6431133 ~ 6434600 (+)
XLOC_003201 FO681393.1 coding upstream 37464 6422374 ~ 6423160 (+)
XLOC_003200 AL840638.3 coding upstream 82554 6374448 ~ 6378070 (+)
XLOC_003206 NA coding downstream 123404 6636422 ~ 6642487 (+)
XLOC_003207 si:dkey-246j7.1 coding downstream 137948 6650966 ~ 6656271 (+)
XLOC_003208 CR381534.1 coding downstream 145638 6658656 ~ 6678209 (+)
XLOC_003209 pde4cb coding downstream 171950 6684968 ~ 6794144 (+)
XLOC_003210 NA coding downstream 295078 6808096 ~ 6816005 (+)
XLOC_003250 BX324177.11 misc downstream 4832785 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 4859868 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 4873344 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 4905015 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 4916375 11429393 ~ 11429689 (+)
XLOC_003199 AL840638.2 non-coding upstream 132531 6327978 ~ 6328093 (+)
XLOC_003198 AL840638.1 non-coding upstream 136322 6322998 ~ 6324302 (+)
XLOC_003195 BX248501.1 non-coding upstream 236504 6205969 ~ 6224120 (+)
XLOC_003189 CT573239.2 non-coding upstream 385841 6069875 ~ 6074783 (+)
XLOC_003212 BX936438.2 non-coding downstream 349234 6862252 ~ 6862368 (+)
XLOC_003215 FQ976909.1 non-coding downstream 433573 6946591 ~ 6956379 (+)

Expression


Co-expression Network