XLOC_003206


Basic Information

Item Value
gene id XLOC_003206
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 6636422 ~ 6642487 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008533
TTTTGAAGTTTCTTGTGTTGTTTGAGCCTCGATCTTGACATACTATAGTGTTGAAAAATGCGCAGTGCACCATATTTTCCTCAGTTTGTGTTATCAACACTGATAGGCTCAGGGACAAAGCGCTCAGACAGAGGAGGCAGGTCATGTCTTGACAGTCACATGATCAGAGGCGTCCGGCCCCTTGAGAAGTAGGCCATGGGATTACAGCAGGCACATTCACGTCTCAGCCGGAGACATCTGAACCACACAGGCTACAGACGCATCCAATACAAACAGGCATGTTTACAGCCAAAAGCAATAGATTCCCTAAATCTGCTGAGAGGTTTTGATTTCCAGGCAACATTGAACATCTATTAGGTGTTCAGATCAACTGTACAAAAACATACTGTAAATAAGCAAGCACCGCCTTCCTAGTCCAGTGTCATATATCGCTGCTGGAGCATTCAAGTTATATTGGGAAgtagaattattaaccccttaaaTTTTACTCACTATATTGCAATTAAACCCTAATCTGATCAGGACAAATGATATATTACCCGAATATATTGAATATTTGAAAGGTCTTCTGAATACCTAACCGttactttgttgttgtttttttttggtatgtTGGAATTATGTAAGAGATCAAAATCCATTTACTGTCACCCTGTGGAATCGTCTGCAGATATATTTTGAAACCATATTATTGTAcccccaaaaataaaactttcatGGCAAAATATATATCATATGAAAGCTTAAATTGTCTAGTTTCCATATACCGTGACTTGATTTTTTGCAGATATCACTAAGCAACA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008533 True 803 lncRNA 0.38 2 6636422 6642487

Neighbor

gene id symbol gene type direction distance location
XLOC_003205 NA coding upstream 123404 6460624 ~ 6513018 (+)
XLOC_003204 gadd45ba coding upstream 178674 6456146 ~ 6457748 (+)
XLOC_003203 CU062501.1 coding upstream 192259 6443457 ~ 6444163 (+)
XLOC_003202 VMAC coding upstream 201822 6431133 ~ 6434600 (+)
XLOC_003201 FO681393.1 coding upstream 213262 6422374 ~ 6423160 (+)
XLOC_003207 si:dkey-246j7.1 coding downstream 8479 6650966 ~ 6656271 (+)
XLOC_003208 CR381534.1 coding downstream 16169 6658656 ~ 6678209 (+)
XLOC_003209 pde4cb coding downstream 42481 6684968 ~ 6794144 (+)
XLOC_003210 NA coding downstream 165609 6808096 ~ 6816005 (+)
XLOC_003211 rab3ab coding downstream 176563 6819050 ~ 6850593 (+)
XLOC_003250 BX324177.11 misc downstream 4703316 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 4730399 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 4743875 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 4775546 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 4786906 11429393 ~ 11429689 (+)
XLOC_003199 AL840638.2 non-coding upstream 308329 6327978 ~ 6328093 (+)
XLOC_003198 AL840638.1 non-coding upstream 312120 6322998 ~ 6324302 (+)
XLOC_003195 BX248501.1 non-coding upstream 412302 6205969 ~ 6224120 (+)
XLOC_003212 BX936438.2 non-coding downstream 219765 6862252 ~ 6862368 (+)
XLOC_003215 FQ976909.1 non-coding downstream 304104 6946591 ~ 6956379 (+)
XLOC_003216 CR925817.1 non-coding downstream 452689 7095176 ~ 7103536 (+)

Expression


Co-expression Network