XLOC_003211 (rab3ab)


Basic Information

Item Value
gene id XLOC_003211
gene name rab3ab
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 6819050 ~ 6850593 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006328
AAGTGTCTGCAGGTGTTGGAAGAGGCGCAGTATTGGCGTAAGAGACGCTTTAAACGGCTTTTAACGATGGCTTCAGCTACAGACAACCGTTATGGACAAAAGGAGTCTTCTGACCAGAACTTTGATTACATGTTCAAAATCCTAATCATCGGGAATAGCAGCGTTGGGAAGACCAGCTTTCTGTTTCGTTATGCAGACGACTCCTTCACGCCAGCGTTCGTAAGCACGGTCGGCATCGACTTCAAGGTGAAGACCATCTACAGGAACGACAAGAGGATAAAGCTGCAAATCTGGGACACAGCGGGGCAGGAGCGTTACAGAACCATCACCACCGCTTATTACCGTGGAGCCATGGGATTCATCCTCATGTACGACATTACCAATGAGGAGTCTTTCGCTGCAGTGCAGGACTGGTCCACACAGATTAAGACATACTCATGGGATAACGCTCAGGTGCTTCTAGTAGGCAACAAGTGTGACATGGAGGATGAGAGGGTCGTGGCTTCTGAAAGGGGCAGACAGCTCTCTGAGCATCTTGGTTTTGAATATTTCGAAGCCAGTGCCAAGGACAACATTAATGTTAAACAAACCTTCGAGCGGTTGGTGGACATAATCTGCGAGAAGATGTCAGAGAGCCTGGATGCTGCCGATCCTGCAGTGACGGGAGCCAAACAAGGGCCGCAGCTCACAGAGCAGCCCGCCGCCCCGCACCAGGACTGCGCCTGCTGAAAATCCCACAGCTCTGTCTGCACTGCCttgcaccaatacacacacactcacacacggaAAAAACACAAGTTTAGGTATTTAAAAA

Function

symbol description
rab3ab Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in several processes, including maintenance of presynaptic active zone structure; regulation of vesicle-mediated transport; and secretion by cell. Predicted to act upstream of or within protein transport. Predicted to be located in membrane. Predicted to be active in axon; cytoplasmic vesicle; and plasma membrane. Predicted to be anchored component of synaptic vesicle membrane. Orthologous to human RAB3A (RAB3A, member RAS oncogene family).

GO:

id name namespace
GO:0072659 protein localization to plasma membrane biological_process
GO:0006904 vesicle docking involved in exocytosis biological_process
GO:0009306 protein secretion biological_process
GO:0048790 maintenance of presynaptic active zone structure biological_process
GO:0017157 regulation of exocytosis biological_process
GO:0031630 regulation of synaptic vesicle fusion to presynaptic active zone membrane biological_process
GO:0007409 axonogenesis biological_process
GO:0005768 endosome cellular_component
GO:0030424 axon cellular_component
GO:0005886 plasma membrane cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0098993 anchored component of synaptic vesicle membrane cellular_component
GO:0031982 vesicle cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-268 Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in several processes, including maintenance of presynaptic active zone structure; regulation of vesicle-mediated transport; and secretion by cell. Predicted to act upstream of or within protein transport. Predicted to be located in membrane. Predicted to be active in axon; cytoplasmic vesicle; and plasma membrane. Predicted to be anchored component of synaptic vesicle membrane. Orthologous to human RAB3A (RAB3A, member RAS oncogene family).

Ensembl:

ensembl_id ENSDARG00000043835

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006328 True 814 mRNA 0.50 5 6819050 6850593

Neighbor

gene id symbol gene type direction distance location
XLOC_003210 NA coding upstream 3045 6808096 ~ 6816005 (+)
XLOC_003209 pde4cb coding upstream 24906 6684968 ~ 6794144 (+)
XLOC_003208 CR381534.1 coding upstream 140841 6658656 ~ 6678209 (+)
XLOC_003207 si:dkey-246j7.1 coding upstream 162779 6650966 ~ 6656271 (+)
XLOC_003206 NA coding upstream 176563 6636422 ~ 6642487 (+)
XLOC_003212 BX936438.2 coding downstream 11659 6862252 ~ 6862368 (+)
XLOC_003213 klhl26 coding downstream 30408 6881001 ~ 6895981 (+)
XLOC_003214 crtc1b coding downstream 51713 6902306 ~ 6958042 (+)
XLOC_003215 FQ976909.1 coding downstream 95998 6946591 ~ 6956379 (+)
XLOC_003216 CR925817.1 coding downstream 244583 7095176 ~ 7103536 (+)
XLOC_003250 BX324177.11 misc downstream 4495210 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 4522293 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 4535769 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 4567440 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 4578800 11429393 ~ 11429689 (+)
XLOC_003205 NA non-coding upstream 306032 6460624 ~ 6513018 (+)
XLOC_003203 CU062501.1 non-coding upstream 374887 6443457 ~ 6444163 (+)
XLOC_003217 NA non-coding downstream 298478 7149071 ~ 7152007 (+)
XLOC_003218 CU929070.2 non-coding downstream 300227 7150820 ~ 7150906 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000057_04443549_04450402 RAB3A, RAB3A.L, RAB3AB coding CI01000057 null 4443549 ~ 4451138 (+)
bowfin (Amia calva) AMCG00006074 rab3a,rab3ab,LOC105900867,LOC107553558,LOC107680521 coding CM030142.1 CM030142.1 15753228 ~ 15766640 (+)