XLOC_032150


Basic Information

Item Value
gene id XLOC_032150
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 34942605 ~ 34943518 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064871
TGGTTTTCTCttatagatttatatttattactgAATGTTGACAAAGCAGTTTAGTTCTCCACGTATAGCCTGTATCAAATCAAGGCAGTGGTGATACCCAAGCGCGCTGGTTACACCCGGCTGAGGAAGACTGATTTACGGTCATTTATTTGCAGAAACCTTAAGCCTATTTTAACAGAGATGCCGAATGCGGTGACTGAGGCGATGATTGAGTCGTATGCGCTGATGTTTTTGGTGATGTCAGCGTTTTTCGTGTACTTTTGCGGCATGGTCTGGGCTTTCTGCAACCCGAAACTCAGCGGCTCCTCTGAAGACCCAGAGTGCGACACGAGCAGCGTCTCTCAAGTCCCTCTGCAACAAATCTTCGCGGATCCTGAAGATCTGGAGACAAGTTATCCGACACACACTCGACGTTTAATGGATCAGCCGAGGCACAGTTACATCGCCTCGTCATATATTGTGGATTAACACTATGAAAATTGAAGAAAACATCACAAACTCCAGTTATTCATAGGGAACGCAGAGAACTCCGCTTCAAGACACAGGTAAGATTAGAACAAATATCGTCAGGTTAAAATGTATGGCAAAACAGAAAACTAAGTTGGTTATTATAGCATAaacgtttttgttgttgttaacagGTAAATATATCAAGCTTCGCCATCATCACTGCAAACCATCAATACCTGCAATCCTCCAACTCAGAATTCATTTACGGAACATTAAAATACTAACACAGTTCTTCGTTTCGGATCTGTAAGAGCTTTAATgcagtttaataaatgtgttacaACTGCACTTTGTTGTAATTTGAATATGAACACCCATAAACAATGTAGCTTATATGTGCCTATTGTGTTAAGAAAGTTTTACTTATCAGCTGAAtgaggataaacttttttttttgtagagaa

Function

GO:

id name namespace
GO:0006638 neutral lipid metabolic process biological_process
GO:0006639 acylglycerol metabolic process biological_process
GO:0006642 triglyceride mobilization biological_process
GO:0036088 D-serine catabolic process biological_process
GO:0009065 glutamine family amino acid catabolic process biological_process
GO:0009078 pyruvate family amino acid metabolic process biological_process
GO:0009080 pyruvate family amino acid catabolic process biological_process
GO:0046144 D-alanine family amino acid metabolic process biological_process
GO:0033278 cell proliferation in midbrain biological_process
GO:0006522 alanine metabolic process biological_process
GO:0006524 alanine catabolic process biological_process
GO:0046436 D-alanine metabolic process biological_process
GO:0055130 D-alanine catabolic process biological_process
GO:0044872 lipoprotein localization biological_process
GO:0070178 D-serine metabolic process biological_process
GO:0006560 proline metabolic process biological_process
GO:0006562 proline catabolic process biological_process
GO:0042953 lipoprotein transport biological_process
GO:0005615 extracellular space cellular_component
GO:0032994 protein-lipid complex cellular_component
GO:1990777 lipoprotein particle cellular_component
GO:0034358 plasma lipoprotein particle cellular_component
GO:0034359 mature chylomicron cellular_component
GO:0034361 very-low-density lipoprotein particle cellular_component
GO:0042627 chylomicron cellular_component
GO:0034362 low-density lipoprotein particle cellular_component
GO:0034385 triglyceride-rich plasma lipoprotein particle cellular_component
GO:0003884 D-amino-acid oxidase activity molecular_function
GO:0015248 sterol transporter activity molecular_function
GO:0120013 lipid transfer activity molecular_function
GO:0120015 sterol transfer activity molecular_function
GO:0120020 cholesterol transfer activity molecular_function
GO:0070325 lipoprotein particle receptor binding molecular_function
GO:0050750 low-density lipoprotein particle receptor binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064871 True 914 lncRNA 0.40 1 34942605 34943518

Neighbor

gene id symbol gene type direction distance location
XLOC_032149 il12rb2 coding upstream 16915 34908597 ~ 34925690 (+)
XLOC_032148 il23r coding upstream 47430 34868156 ~ 34895175 (+)
XLOC_032147 lrp8 coding upstream 131097 34511886 ~ 34811508 (+)
XLOC_032146 CR848703.1 coding upstream 432469 34442409 ~ 34510136 (+)
XLOC_032145 NA coding upstream 756011 34185673 ~ 34186594 (+)
XLOC_032151 NA coding downstream 34182 34977700 ~ 34980647 (+)
XLOC_032152 uhmk1 coding downstream 109203 35052721 ~ 35061467 (+)
XLOC_032153 rgs4 coding downstream 418707 35362225 ~ 35366944 (+)
XLOC_032154 CR385065.1 coding downstream 440673 35384191 ~ 35393308 (+)
XLOC_032155 NA coding downstream 851139 35794657 ~ 35824376 (+)
XLOC_032142 NA non-coding upstream 957940 33983869 ~ 33984665 (+)
XLOC_032141 NA non-coding upstream 960111 33981639 ~ 33982494 (+)
XLOC_032138 CR855206.2 non-coding upstream 1122626 33817691 ~ 33819979 (+)
XLOC_032156 NA non-coding downstream 972735 35916253 ~ 36259154 (+)
XLOC_032157 NA non-coding downstream 1173186 36116704 ~ 36119890 (+)
XLOC_032137 CR855206.3 non-coding upstream 1107424 33813288 ~ 33835181 (+)

Expression


Co-expression Network