XLOC_032159 (rhcgl1)


Basic Information

Item Value
gene id XLOC_032159
gene name rhcgl1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 36381709 ~ 36391687 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062845
ACATGTTACTATTGAAAGCAACAGACTAAATTAACAAGAAAGGCATTTGACTGTCATTTCCACAACATCTGTTCGGGAGAATCTGCAAGATCAAAAATGGTCAAAAACACCAATATTCGAATCAGTCTCCCTGCGGTTTGCTTTGTCTGGCAGATTGCTATGATCATCCTGTTTGGTGTGTTCATCCGTTATGATGAGGAGTCTGACAGCCATTGGATCGAAACACGGAAAAAGAACAATATTTCCACTGATTTAGAGAATGACTTTTACTATAGATATCCAAGTTTTCAGGATGTGCATGTGATGATCTTTGTTGGTTTTGGATTCCTCATGACCTTTCTGAAGCGTTACAGTTTTGGTAGTGTTGGATTTAATTTTCTCATCGCAGCCTTTGGCATTCAATGGGCTCTGCTGATGCAAGGCTGGTTTCATTCCTTTGACAAAGAGGACTTGAAGATAAAAATCGGCGTTGAGAACCTCATCAACGCAGATTTCTGTGTGGCTGGTTGTCTCATTGCATATGGTGCTTGTCTTGGAAAAGTCAGTCCTGTACAACTGATGGTTCTTACTCTGTTTGGAGTCACTCTGTATGCAGTTGAAGAGTACATCATTCTCTATGTCCTTCATGTGAGAGATGCTGGTGGTTCTATGGTCATCCACACCTTTGGTGCATATTACGGTTTAACCATATCTTGGGTCTTGTATCGACCATTTCTGTCTCAAAGCAACCATTTACAACGATCTGTATACCACTCTGATGTATTTGCAATGATTGGCACTCTGTTTCTTTGGATGTTCTGGCCaagttttaattcagcaattgCGGATCATGGAGATGGCCAGCATCGAGCTGCTATAAACACTTACCTATCCCTGGCCGCATCGGTTCTCACTACCTTTGCCCTTTCCAGTCTCTCAAAGAAATATGGAAAACTCGACATGGTACATATTCAGAATGCTACCTTGGCTGGTGGTGTAGCGATGGGAACGGCTTCAGAGTTCATGATTACACCTTACGGCTCTCTGATAGTGGGATTCTGTTCGGGTATTGTCTCCACCCTTGGATATGTCTTTCTGACTCCTTTAATGGAAAAAACCTTGAAGATACAAGATACCTGTGGTGTACATAACCTTCATGCAATGCCTGGAGTTATTGGTGGAATTGTTGGAGCTGTTACTGCAGCTTGTGCCAGTGAATCTGTTTATGGACATGAAGGactgatTAACATGTTCGGATTTGAGGGTAAAGTGAACAGAACAGCCAGCGTTCAGGGAGGATACCAGGCGGCAGGTATCTTTGTAGCAATAGCATTCGGCCTTGTGGGAGGAGCTTTGGTTGGTGGCATACTAAAGCTGCCAATCTGGGGAGACCCAACAGACAGCAACTGCTTTGATGATGATATTTACTGGGAGGTTCCAGAGGAAGAGGATGAAAATATTCCTGCTTTTGGACATCAAAACATGCATCATGTAGAAAGGACGCCAGATGCACATCACCGAAGTCATGTGTAAGGGGGCAACACAACAACAGCAACCTGAAAAGTTCTACATCTAAAAAAATGAAGATGGAATAGGAATCATGGAGGCTTCAAAGATTGATTAGACAAGCTACTCAATGGAAAATTTTAAGTTTGTCATGTGACAAGATGTGATGTGTGTTAGTCAATGTCATAATCTTCAAGAATCTTCTATGTAGCACCAGACTAACCAGTGCTGCCACTGCTACTTCAGCaaaaacaatttcaaaaagtCCTCATGGCTTTATTTCCTTTTTGAATTCTTTGCATTCCAACACCAGCGATCTGACACTTCACCTTTTCTTTGTCTGGAAAATAactatattaatacaattttaagaCTGTCATACctttttttatacacttttatacTGATAATAATCATCATATAATGAATCTGTTCAGACTAAAGAAACATTAGAattgttaaactaaaaaaatatgcctaaagctgataaaaaaaaaa

Function

symbol description
rhcgl1 Predicted to enable ammonium transmembrane transporter activity. Acts upstream of or within ammonium transport and sodium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in ball; gill; gill filament; pharyngeal arch 3-7; and pigment cell. Orthologous to human RHCG (Rh family C glycoprotein).

GO:

id name namespace
GO:0072488 ammonium transmembrane transport biological_process
GO:0015696 ammonium transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008519 ammonium transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060209-2 Predicted to enable ammonium transmembrane transporter activity. Acts upstream of or within ammonium transport and sodium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in ball; gill; gill filament; pharyngeal arch 3-7; and pigment cell. Orthologous to human RHCG (Rh family C glycoprotein).

Ensembl:

ensembl_id ENSDARG00000007080

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062845 True 1983 mRNA 0.40 11 36381709 36391687

Neighbor

gene id symbol gene type direction distance location
XLOC_032158 BX936433.1 coding upstream 96598 36281005 ~ 36285111 (+)
XLOC_032156 NA coding upstream 122555 35916253 ~ 36259154 (+)
XLOC_032157 NA coding upstream 261819 36116704 ~ 36119890 (+)
XLOC_032155 NA coding upstream 557333 35794657 ~ 35824376 (+)
XLOC_032154 CR385065.1 coding upstream 988401 35384191 ~ 35393308 (+)
XLOC_032160 NA coding downstream 23036 36414723 ~ 36415086 (+)
XLOC_032161 lrrc15 coding downstream 68210 36459897 ~ 36463695 (+)
XLOC_032162 BX950188.1 coding downstream 73660 36465347 ~ 36618498 (+)
XLOC_032163 BX950188.2 coding downstream 120125 36511812 ~ 36511930 (+)
XLOC_032164 NA coding downstream 322672 36714359 ~ 36714622 (+)
XLOC_032171 BX950870.1 non-coding downstream 598883 36990570 ~ 36990684 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G491168 NA non-coding CI01000340 null 7451153 ~ 7456580 (-)