XLOC_032169 (traf3ip2l)


Basic Information

Item Value
gene id XLOC_032169
gene name traf3ip2l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 36877968 ~ 36901130 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062858
TGGGCGGAGTTTAGCGTGTGACTGCAGGTGTTGAGAAGCTTTCAAACAGACGCTTCTATACAAGAAGTAATGTCCCGAGCGGTTTTGTACACTATTGTTAGACCTTGACCGGAGTTAAATCCTCAAGCGACTAAATCGGTCTACAGATTTGTGTGCTGGCTGGGGATATGAAATGGCTCCAGCTCTTCTATATTAAATGCAAGGATGATGATTTCCCTGCATAGTTTACCAAATAGGTATACTTCTCCATTTGCCCACTACGGTCAACAATCCCTCAACTTTCCAGAAGAGAACGACGAGACTATGGATAAAATCAATACTAAGGATTCTGTCTGTGACTCAGACTTCACAGATTCTCAACTTTCTCTTGCCGGATGTTGCATGTCTGGCAGTGAATCTTCTCTCAGCACTCAGGCTGACTTCGTAAATATCTGCAGTGACAGAAAGACCAACTACAGACCCACACAGACCAACTACAGCCCTTACCAGCCTCCATTAGGTCTACCCTCTGGGTACAATCCCCAGACGCCTTTTCCCAGCCAGACAGAAGCATGTCTGAGCACCTTCGAGCCGCACAAAGGAGAGCTGCACTCGGTGAGCAGCAGTTTGGTCGAATACCCTAGTGGAAACCCCCCCTCTTGTTTGGTGTCTGGAAATTACCCCAATTATCCTGGCGATTCTTGCTACTCCTGCTCTCCAGACAGGCACAGTGTTGGAGAGGGGAGTCTCGAACAGCCGCGCTCATTGCACTCTATTCCTACTGCGTTCACGCCTCACAGTTACTGCCTGCCTCAGCACCTCCACGGACCGCCCTGTCTCAGTCATTACCCTGCAGATATGTGTCAGATGGATCAAGGCTCTCATTACAGGCCGCATTACCACATGCATCATTGGGCTTCTCGCCCTGAAAACAGCAGACAGTCAGCTTCAGAGTTCACTCATAGTGGCTACACCTCTTCTCACCATGGCGCTAAACTAACCCCAAGTACAGCTCCTCTTTCCCTGGAGCAGAGGAAGGTGTTTGTTACTTACGAAGCAGACAGCGAAAAACATGTCAAAGAGATCATCAACTTTGTCGCCCTGCTGAGACACAATGGCTTCTACACTCACATTGACATGTTTGAGCAGCAGTTCAAGAGCATAAGCAAGATTGACTTCATGGAGAGATACATCAGCGAAAAAGACTATCTGATTATCATAGTCATTAGCCCAAAGTACCACGAGATTGTGACCAATGCTTCCTTTTGCATGGAAAACGATGAAACGCTCAACACTGTCTACATACACAAACAGTTACAAAACGAATTCATTCAGAATGGAGCCAGGAATTACAGATTCATCCCCATCTTGTTTCCCGGTGCCAAAAAGtgCCACGTCCCTTCATGGCTTCAAGGCACGCAGATCTTCACCTGGCCCAGGGATCGTGATGATATTCTCCGTCGACTCATGCGCGTTGAGAAGTACAACCCTCCACCTATAGGAGAGCTGCCCACTATTGTCTCCATTCCCATTTAGCTCATTATATTTGCTTTGGAAACCATGATGATATGTCAGTTATCAACAGCCTTATacttcattttaaattagtttgctTCTTTGAACTATTAGATCTGGATTTAACATGTTAAAAGGCATAAAGCAACtgacatacattgctcagcataaatgagtacaccccatgtTTGTATATATTAGAAAATAGGCAATATACTGTATTTTGGTTGTatttgaacaaaactgatttaataaacatttatattcatca
>TCONS_00062859
ATTTGTGTGCTGGCTGGGGATATGAAATGGCTCCAGCTCTTCTATATTAAATGCAAGGATGATGATTTCCCTGCATAGTTTACCAAATAGGTATACTTCTCCATTTGCCCACTACGGTCAACAATCCCTCAACTTTCCAGAAGAGAACGACGAGACTATGGATAAAATCAATACTAAGGATTCTGTCTGTGACTCAGACTTCACAGATTCTCAACTTTCTCTTGCCGGATGTTGCATGTCTGGCAGTGAATCTTCTCTCAGCACTCAGGCTGACTTCGTAAATATCTGCAGTGACAGAAAGACCAACTACAGACCCACACAGACCAACTACAGCCCTTACCAGCCTCCATTAGGTCTACCCTCTGGGTACAATCCCCAGACGCCTTTTCCCAGCCAGACAGAAGCATGTCTGAGCACCTTCGAGCCGCACAAAGGAGAGCTGCACTCGGTGAGCAGCAGTTTGGTCGAATACCCTAGTGGAAACCCCCCCTCTTGTTTGGTGTCTGGAAATTACCCCAATTATCCTGGCGATTCTTGCTACTCCTGCTCTCCAGACAGGCACAGTGTTGGAGAGGGGAGTCTCGAACAGCCGCGCTCATTGCACTCTATTCCTACTGCGTTCACGCCTCACAGTTACTGCCTGCCTCAGCACCTCCACGGACCGCCCTGTCTCAGTCATTACCCTGCAGATATGTGTCAGATGGATCAAGGCTCTCATTACAGGCCGCATTACCACATGCATCATTGGGCTTCTCGCCCTGAAAACAGCAGACAGTCAGCTTCAGAGTTCACTCATAGTGGCTACACCTCTTCTCACCATGGCGCTAAACTAACCCCAAGTACAGCTCCTCTTTCCCTGGAGCAGAGGAAGGTGTTTGTTACTTACGAAGCAGACAGCGAAAAACATGTCAAAGAGATCATCAACTTTGTCGCCCTGCTGAGACACAATGGCTTCTACACTCACATTGACATGTTTGAGCAGCAGTTCAAGAGCATAAGCAAGATTGACTTCATGGAGAGATACATCAGCGAAAAAGACTATCTGATTATCATAGTCATTAGCCCAAAGTACCACGAGATTGTGACCAATGCTTCCTTTTGCATGGAAAACGATGAAACGCTCAACACTGTCTACATACACAAACAGTTACAAAACGAATTCATTCAGAATGGAGCCAGGAATTACAGATTCATCCCCATCTTGTTTCCCGGTGCCAAAAAGtgCCACGTCCCTTCATGGCTTCAAGGCACGCAGATCTTCACCTGGCCCAGGGATCGTGATGATATTCTCCGTCGACTCATGCGCGTTGAGAAGTACAACCCTCCACCTATAGGAGAGCTGCCCACTATTGTCTCCATTCCCATTTAGCTCATTATATTTGCTTTGGAAACCATGATGATATGTCAGTTATCAACAGCCTTATacttcattttaaattagtttgctTCTTTGAACTATTAGATCTGGATTTAACATGTTAAAAGGCATAAAGCAACtgacatacattgctcagcataaatgagtacaccccatgtTTGTATATATTAGAAAATAGGCAATATACTGTATTTTGGTTGTatttgaacaaaactgatttaataaacatttatattcatcaaaataagagtttggtcaattaacacctttagaaatagaaagataacgcatttaatttcacattttaataaattacaaactacaaaatttcaactttgtttatttttttttgtctcttgattttttcctattttattattatgtatttttttacattttatttaatatttttttcctaacaTATACATTTCTGTGTACTAACATTTGGACCATTATCATCAGTTTTTtaagttagataagctccaggtttggcttcagtactgactaatatatTGTACACGCaccaatataatattgtatagctttctatagaaaatcttaaattaaaagagaaatttgtgaggggtgtactcgtatatgaTAAGCTCTATAGAAACTCACAGCATTTAATGTTTCATCACAGAAGATTGATTAATAAGTCAAAATCTGTCCCGATGTGTAGAACTTCAGATGCATATCATAGCTGAATTATACATGCATTTACACTATGAACTGCCATCCCCTTACCATATTTAATTGGGCAAAAAAAGTTAGCCAATGAATTTATCATACAAATTATTATAAAGAGGCCAATAAGCATACAAGTGTTAGTTAGACGTATGTTTAAGACATTGTTTAGAATAGTACAAGCTAAAACAGGAAAAGTGAAGACATAGaggatttgttgttgttgttgttgttgtttgtaggATGCAGTTTAGTGCGCAGCGGAGAGCAGGGATTTCAGCATTTAGAAGTTATTtgggaagatcattccaccacGGAATAGTGAACAAAGATGTTCTGGAGAATGAGGTTGTGTCCCTCTGTGAATCAGGAAAGCAAGCTACTGTAAAAGGTGAATCACATCATTACAGATTTTAGTTTGAAGCCGAAAGAATATTTGGAATCCTTGTAAAATAGAAAGAAATGTACAAGTGGTGTAATTTAACAGATTTAGTTTTTACTTCCGTAACTAGGCTGGTGCACGCTATTGTAATCACTGGATTGTGTTTCAGAATTGCAACACACAATGGTAAATGTAAGGGCACCTTCAGACATAATTAAAATTCCTATAACATAATCATCATATGTACTTAATAAAGATTTTATTCCAGGCTTtcatcaaatttttatttatttattttttttaatcacagttCTTTCCTGTTGAGTGAATCTGAACTATATTGATGACAGACAATATCATTAAAGTTTTCCTACTCTACTTTATTTATTTCGTTTTATAATCTTTCGTTTTATTATCTTTGTGAGTTAAATTATGAGTGTAAGTCATTGATAATGCATCTTAAAATAAAACTTGCATTGATCTCTGCTAGCCGGTTTCCAAGATGATGATGGCTTAAATCTGTTTCAGCATGAAACCCTTTAACTAactgaaataattgtttttatacgAAAAATAGACTTTAGGGCTATATGGCACATAAGTACAGTTTTCTATTTTTTCATAATCGAGTACATTGGTATTGAGGAGGAAATAAGAAAGGAAGGTGCTTGGGATTTTATCGATTACATAACAATGGggggtgtatgtgtgtttgtgtgtgtacatatttTTGTAATTGCAGtcagctattaaaaaaaaaagttgaatgctATGCGCTTTACACAGTAATACAGCACTGTGTGCTAAACAATATCTGCCTGAGGCTACTGCTTCATGCTCCAGAGAGTGAAAATTTGTCAATCCCATAGTCTCTTATTTCTGAAAAATAAACCTTTTATTACTGTATAAAAGCCAATAGAGGTACACAAAGGCTTTTTAATACTGTTTTAGCTGTCTTGCTGCTTGAAACTGTGTAAACAAACCAACTGTGTTCATTATCTGAAAGTGTTAACGCAAAGTTTCTTTGGATAAATGCATCTTCAAAACATTAATTGAATTGTAATAAATCctaaattaattataaacaattaatgtttttttgttaaaaatttgaAGGAATTTTAGTAGCCCGTATATCAGAGTTTTACGAAATAACTAATACATTAAAACAATACTACAATTACCAAGTAAGAATAATTACTAAATATTATATCTttgtggaatttttttttaagaattttaaTATTGTCGCAATCCCTGTTTTTGAATGACTTCAGCTAGTTATCAGTCTCTGTCAGGATTTATAGTCTCTCTGCTCTGCTGTGATCTTGATCAGCTCTTTTTCAGGCTTTTACAGTTTTCACAGACTGTAGTGGTTTTTTTGACATAACTGCGCCAGAAAATATATATTCTAGAGATGTTTGTtcaggtttagatcaggactctggggtgccatttcattattttattgctTTCAGCTTCaaggatctgtttttttttttttttaagaaacctcCCTATTCAACTGGTGAGGAATACTAGTCTCCAGTGTTGAACTGATTGCCATTTAGTTTCTTCAAATTTTACTATGTGCTTTTGGATTTCATGTACATAAGGTATTGTATGCCTTTCTAGGGGATTTTAATGAGTTAGTGATAATTTAAAGATGCAATATCTCTTGCTTGTTTCTTCATCTTTTTGGTCTTCATCTGATTAACTTTCTGTTGGGTGCTTTCGGTCAATTTATAACTGCTTACCATCTTTAAAACAAAGTCTGTGAAAACTGGAAATTTAATCTGCTGATTAAATAGGATAGGGTTTGGCCAATAATAGTACAAAATTACCAAAAAGTTTCCAGATTAACATTAAATATGGGAGGATGTGAAAGTGTGCTCTAAtttgacttaacttaaaatatgacttcaaagttttttttttttttttttttttttttttaaatgccatcaTTTATGCAACCTTGACtagttccaaaccagtttgagtttgtttgttctgttgaacacaagatatgttagtttgaagaatgttggaaacctgtaactattgatattcaaaaacaaatactatggatacCAATGGTTACAGcttatcagcattcttcaaagtatcttcttttatgttcagatATGTtttgaacaagtcaagggtgacaaaatgatttttaatttttgggtgaactatcactttaattgtTGGTTGTTCTTTaattttaatgtccattattatATATCTTGCACTGTATATTGATGGCCATGGCCGTCAAGCAAGATTTTCTTTAGGCATTCTTTTTAATGAATTACTTCCAAGATCTCTCTTTTTTTACATAGTGTGACCTTTTTCAAGTCTGACAGACTCGGCCTTCGTTCACTTTCATTTTATATAACAGAGCAGAACATCCTCTTTTGTATTCCATGGAATAAAGATTGATGAATTatgtcagaatttttatttttgggtgaaatacaCCTTGAAGCAAACAATCCAAACGAACTCTCTCATTAAATGTTTGTCAGAATCTCTCATCAAATATCTGTCACATGATCTGAGAAATCTCAACCCAGTTAGTTTGTGTCTTCAAGGAGTTACTGAAGGTTAATTAAGCCCCATTAAACTAAGTGTAACCCCTCATACCGAGGCTTATCAGGAATGAATTATTATAAATCAGCCGTAACAATATAATAAAGGGGATTTGGTCATAGAGAGACTGACATAATCCTCGAACGAACAATATTAGCAGTATCTAAAAATGATTTGCTGAGGAGAAATGGTTATCGGTTTGTAATTATATTGAGATGAGAAACGGAATGATTGATTATTCAATGCGGTGACAGAAAAGGTTATGGGAACAGGATCTTCAGCGTCGTCTTTTTATAGATGGTTAATTCTTCGATGAAACAAGTTAATTCAAGGAATATGTCATCCATCAACCGCACCACAGCTCTGTGAAATATTTTGAAGGCTTGTCACTTACGATATCAAACAGCAGTGTTATTACAACCTCcagattaattttataaaatCCACAAACGTGTCGGAGAGATCAGTGATTACCCGCAGGACTGAACTGCTGTTCtttgctgtaaaaaatgcagggttccacaaaaaTCGATTGAAAACTTGACATTTATAAGTggacaattaagttgtccaaaggAACTGTGTTGCTTGTTGAACATGcagcataattttattttattttatttttttggaatgtgttgttGATTTGAAATTAGAAATAGTTTGTTGTAGGCCTACTTTATAATGTATTTCATTATCATAATACTGGAT

Function

symbol description
traf3ip2l Predicted to be involved in humoral immune response and positive regulation of I-kappaB kinase/NF-kappaB signaling. Human ortholog(s) of this gene implicated in chronic mucocutaneous candidiasis and psoriasis 13. Orthologous to human TRAF3IP2 (TRAF3 interacting protein 2).

GO:

id name namespace
GO:0006959 humoral immune response biological_process
GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-110919-1 Predicted to be involved in humoral immune response and positive regulation of I-kappaB kinase/NF-kappaB signaling. Human ortholog(s) of this gene implicated in chronic mucocutaneous candidiasis and psoriasis 13. Orthologous to human TRAF3IP2 (TRAF3 interacting protein 2).

Ensembl:

ensembl_id ENSDARG00000091734

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062858 False 1765 mRNA 0.45 10 36877968 36896993
TCONS_00062859 True 5756 mRNA 0.35 9 36878815 36901130

Neighbor

gene id symbol gene type direction distance location
XLOC_032168 chd1l coding upstream 381 36844127 ~ 36877587 (+)
XLOC_032167 sft2d2a coding upstream 33948 36839509 ~ 36844020 (+)
XLOC_032166 tmem45a coding upstream 40432 36821621 ~ 36837536 (+)
XLOC_032165 si:ch73-29l19.1 coding upstream 58599 36795225 ~ 36819369 (+)
XLOC_032164 NA coding upstream 163346 36714359 ~ 36714622 (+)
XLOC_032170 negr1 coding downstream 41836 36942966 ~ 37164417 (+)
XLOC_032171 BX950870.1 coding downstream 89440 36990570 ~ 36990684 (+)
XLOC_032172 NA coding downstream 283063 37184193 ~ 37250364 (+)
XLOC_032173 zranb2 coding downstream 400211 37301341 ~ 37307487 (+)
XLOC_032174 ptger3 coding downstream 407586 37308716 ~ 37311049 (+)
XLOC_032162 BX950188.1 non-coding upstream 259470 36465347 ~ 36618498 (+)
XLOC_032163 BX950188.2 non-coding upstream 366038 36511812 ~ 36511930 (+)
XLOC_032160 NA non-coding upstream 462882 36414723 ~ 36415086 (+)
XLOC_032158 BX936433.1 non-coding upstream 592857 36281005 ~ 36285111 (+)
XLOC_032175 NA non-coding downstream 413207 37314337 ~ 37315909 (+)
XLOC_032176 BX324166.1 non-coding downstream 433429 37334559 ~ 37334963 (+)
XLOC_032178 NA non-coding downstream 568986 37470116 ~ 37476101 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_07721395_07728614 TRAF3IP2L coding CI01000340 null 7721395 ~ 7728752 (+)