XLOC_032203 (krt18b)


Basic Information

Item Value
gene id XLOC_032203
gene name krt18b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 39360377 ~ 39365467 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062915
aAAAGAGAAAAGGAGGAACAGAAAGAGTTTGGTGGGGGTATAAAAGCTGTACAGTTCTCTTCTAGTGGCTCTCAAGGGTTGACATCCCTCAGCGCACACTCATCTTCTACTGCAGCCAGAGCTTCATTCCTCCAAAACCATGAGCTTCTACGCACCCCAGGCCTCTCACATCTCCTTCACCCGCTCTGCGCCCGCTTACCGGGCTGCCAGTACGTATGGTGGGGCAGGTGGGCAAGGCACCAGAATCTCATCCGCTTCTGCGATGTCTTATCGTTCAGCCCCTAGAAGTGGGGGAATTTCCTCTTCCACAGCCTTCAAGGTGAGCTCAGCCGGCATGGGCTCTGGCGCAGGGGGTTCCTTCTTGGCGAGCTCTGGGTCCTCAGGTGGCATGCTGGGCAATGAGAAAGGCCAGATGCAGAATTTAAACGACCGTCTGGCTGCTTACCTGGACACAGTGCGCAGGTTGGAGCAGGAGAACGGCAAACTGGAACAGCAGATTCGAGAGGCTCTGGAGAAAGGTGGACCAGAAACACGCGACTACAGCAAGTACAACGCCATCCTGGATGACCTGAGGAGGAAGGTGTTTGATGCCACTGTGGACAATGCTCGTCTTGTTCTGCAGATTGACAACGCTCGTCTGGCTGTGGATGACTTCAGAGTCAAGTTTGAGAATGAGATGGCAATCAGGCAGTCTGTGGAAGGAGACATCGCAGGTCTAAAGAAAGTTATAGATGAAACCAATATTGGTCGCCTGAATGTGGAGGGAGAAATCGAGTCCTTGAAAGAAGAGCTTGTCTTCCTCAAGAAAAACCATGAAAATGAAGTTGATGAGCTACGGAGCCAGATCTCTCAGTCAGGCGTTCAGGTGGATGTTGATGCACCCAAGGGCCAGGATATGTCTCAAGTGATGGAAGACATGAGAGCTAACTATGAGAAACAGGCTCTCAAAAATGCAGAGGAACTCAAAATGTGGCATGAAACCCAGATAGCAGATGTTCAGGTGCAGGTGGCTCAGAACACAGAGGCATTACAAGGTGCTCAGATGGAGTGTAATGACCTACGCCGACAGATTCAAACACTAGAAATAGAGCTTGCATCACAACAAAACCTGaaAGCGTCACTTGAAGATACTCTACGAAACACTGAGATACGTTCAAATGGAGAGATGGAGAAGTTAAATAACATCATAATTCAACTTGAAGCTGAGCTGGCACAGCTGAGGGCAAATATCACAGAACAGGGACAGGAATATGAAGCACTCCTTAATATGAAGATGAAACTGGAAGCGGAAATTAACACCTACAAGAAACTTCTAGATGGGGAAGATTTCAAGCTCCAGGATGCGCTTGATGGCTGAGAAAAAAAGAGTGAAATTACAGGAGACGGTCCTAAAGATCAACAACAACTTCAAGACAATTATAAATTGCATTCAATGAAACCTGTGGTGAAGCTTTATAATTTGAAAGTCTCCTTCCACTTTGTTTAAACTATACAATTTACAGAGCCATGTTGGTTTCTGGCCATATTTCTTCTCTTCATTATAATGTCATTTACAGGGTATTTGCTTTCTGTCAATGAACCCTGTTTCACCCTACAGTCTGACTTAAAGACAGTTACAGGGCAACATAGgcagctttttaaatgtttggttgTGTATTGAGTCTTTATAATGCACAATCCTGTATTGTAGCAGTGTAAAACGGATATCTCCAAATGAAAGAGGAATGAGAAAATGTGAACCTCTCTACAAAACCAAAGCAATAATGAAATAAATCCATGCCtgccaacagaaaaaaaaatgagtaaagcAAACACAGAGATCTGAAA
>TCONS_00062916
CGCACACTCATCTTCTACTGCAGCCAGAGCTTCATTCCTCCAAAACCATGAGCTTCTACGCACCCCAGGCCTCTCACATCTCCTTCACCCGCTCTGCGCCCGCTTACCGGGCTGCCAGTACGTATGGTGGGGCAGGTGGGCAAGGCACCAGAATCTCATCCGCTTCTGCGATGTCTTATCGTTCAGCCCCTAGAAGTGGGGGAATTTCCTCTTCCACAGCCTTCAAGGTGAGCTCAGCCGGCATGGGCTCTGGCGCAGGGGGTTCCTTCTTGGCGAGCTCTGGGTCCTCAGGTGGCATGCTGGGCAATGAGAAAGGCCAGATGCAGAATTTAAACGACCGTCTGGCTGCTTACCTGGACACAGTGCGCAGGTTGGAGCAGGAGAACGGCAAACTGGAACAGCAGATTCGAGAGGCTCTGGAGAAAGGTGGACCAGAAACACGCGACTACAGCAAGTACAACGCCATCCTGGATGACCTGAGGAGGAAGGTGTTTGATGCCACTGTGGACAATGCTCGTCTTGTTCTGCAGATTGACAACGCTCGTCTGGCTGTGGATGACTTCAGAGTCAAGTTTGAGAATGAGATGGCAATCAGGCAGTCTGTGGAAGGAGACATCGCAGGTCTAAAGAAAGTTATAGATGAAACCAATATTGGTCGCCTGAATGTGGAGGGAGAAATCGAGTCCTTGAAAGAAGAGCTTGTCTTCCTCAAGAAAAACCATGAAAATGAAGTTGATGAGCTACGGAGCCAGATCTCTCAGTCAGGCGTTCAGGTGGATGTTGATGCACCCAAGGGCCAGGATATGTCTCAAGTGATGGAAGACATGAGAGCTAACTATGAGAAACAGGCTCTCAAAAATGCAGAGGAACTCAAAATGTGGCATGAAACCCAGATAGCAGATGTTCAGGTGCAGGTGGCTCAGAACACAGAGGCATTACAAGGTGCTCAGATGGAGTGTAATGACCTACGCCGACAGATTCAAACACTAGAAATAGAGCTTGCATCACAACAAAACCTGaaAGCGTCACTTGAAGATACTCTACGAAACACTGAGATACGTTCAAATGGAGAGATGGAGAAGTTAAATAACATCATAATTCAACTTGAAGCTGAGCTGGCACAGCTGAGGGCAAATATCACAGAACAGGGACAGGAATATGAAGCACTCCTTAATATGAAGATGAAACTGGAAGCGGAAATTAACACCTACAAGAAACTTCTAGATGGGGAAGATTTCAAGTAAAGAGGAAAAGTTTAATTCTTGTATTTCATAGGGCATTAAATACAGTCACTGATTCTAA

Function

symbol description
krt18b Predicted to enable structural molecule activity. Predicted to be located in intermediate filament. Is expressed in several structures, including floor plate; sensory system; vein; yolk; and yolk syncytial layer. Human ortholog(s) of this gene implicated in liver cirrhosis. Orthologous to human KRT18 (keratin 18).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1508 Predicted to enable structural molecule activity. Predicted to be located in intermediate filament. Is expressed in several structures, including floor plate; sensory system; vein; yolk; and yolk syncytial layer. Human ortholog(s) of this gene implicated in liver cirrhosis. Orthologous to human KRT18 (keratin 18).

Ensembl:

ensembl_id ENSDARG00000028618

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062915 False 1827 mRNA 0.45 7 39360377 39365467
TCONS_00062916 True 1302 mRNA 0.48 6 39360469 39364957

Neighbor

gene id symbol gene type direction distance location
XLOC_032202 si:dkey-195m11.11 coding upstream 53656 39290777 ~ 39306721 (+)
XLOC_032201 ankrd33ab coding upstream 74348 39279104 ~ 39286029 (+)
XLOC_032200 b4galnt1b coding upstream 107526 39222598 ~ 39252851 (+)
XLOC_032199 tac3b coding upstream 172720 39184236 ~ 39187657 (+)
XLOC_032198 gpr84 coding upstream 241235 39114345 ~ 39119142 (+)
XLOC_032204 NA coding downstream 4868 39370335 ~ 39378734 (+)
XLOC_032205 mettl7a coding downstream 128397 39493864 ~ 39497974 (+)
XLOC_032206 si:ch211-173n18.3 coding downstream 134156 39499623 ~ 39503381 (+)
XLOC_032207 mettl7a coding downstream 140576 39506043 ~ 39508375 (+)
XLOC_032208 NA coding downstream 167011 39532478 ~ 39541448 (+)
XLOC_032194 NA non-coding upstream 405251 38953481 ~ 38955126 (+)
XLOC_032188 CR628341.3 non-coding upstream 770205 38518219 ~ 38590172 (+)
XLOC_032186 CR405707.1 non-coding upstream 983166 38377091 ~ 38377211 (+)
XLOC_032185 NA non-coding upstream 999934 38358681 ~ 38360443 (+)
XLOC_032184 AL935047.1 non-coding upstream 1272766 38087495 ~ 38087611 (+)
XLOC_032209 AL954698.2 non-coding downstream 300880 39666347 ~ 39667572 (+)
XLOC_032210 AL954698.1 non-coding downstream 334733 39700200 ~ 39717558 (+)
XLOC_032213 NA non-coding downstream 509057 39874524 ~ 39882227 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_09053887_09057663 NA coding CI01000340 null 9053887 ~ 9057663 (+)