XLOC_003222 (reep6)


Basic Information

Item Value
gene id XLOC_003222
gene name reep6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 7261981 ~ 7274378 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006351
CAGCGAAACTATCCTAGACGACTAATTAAACGCCATTCATGTTCTTCGTATAACGACACGAGTTTATTTTAAGTCACCATGTTTGCCATATTTACAAAGATTAAGGACCGCGTCGAGGCTTTTTTAAACGAGAAGAATATTGTCACCGACTGTCTCaataaaattgaagaaaaaaCTGGTATCAAGAAACGTTACTTAGCGTACGGTGCTGCAGGTGTGACTGgagcatttttattattaggatACGGCGCTTCTCTGATCTGTAATCTGATTGGCTTTGTTTATCCTGCATATTTCTCtatCAAAGCCATAGAAAGTCCTGGTAAAGAGGATGACACGCAGTGGCTCACGTACTGGGTAATCTACGGCTTCTTCAGCGTGGGAGAATTCTTCTCGGATATCTTTCTTCACTGGTTTCCATTCTACTATGTATGCAAGTGCCTGTTCCTGTTGTGGTGTATGGCTCCGGTCTCCTGGAATGGTTCTCAGGTTCTGTATAGGCATGTGGTCCGTCCATTTTTCCTGAAGCACGAAGCCGCAGTAGACGGGATGGTCAGCAATATAAGCGTGAAGGCCATGTCAGCAGCTGAGAACGTCACGAGAGAAGTCCTTCACACTCTGGTAAGAAACCGGACTGTTGGCCCAGCTGAGTCTGAACCCAGAAGCCTGCCTAGTTCTGCTCATACTGAACCCACTGTTGATTAAACAaTGTACAGGCGGCCAAAGTGATCTAAGAAGACAGAATACAACACGACATGCAAGAGATTGGTGAAAACCTAAACAAAACTTTGACAACAGAAGTATTATATAGTCTCATTGCAAAGACCTCACTGAGTGAATGGTAATTCACCTTCATCTGCACTATTTTAGACGTAGTGTTTTGTCAAAGGTGGAGTTCTGGAGTTCAACGGTTaatatgaagtgctatgaatactttctggatgcactgtatatctgCTTATAATTAGAATATGTCAGTGTCctcaacacaatagtttggaagTCATTTGTTGTTCACTGCACATATTTCGTCCACTGGCATTTAAAGGGAAAATTCagccaaaaatctaaattctgtcatcatttactcactcttcaaaTGTTCAGAACCTATTTGAGTTCCTTCAAGtagaatatatttttgtaaatgctGGTAGTTGACACCCTATGACTTCAACAGGCTCCAGTAACCTGCATTCTTCAAAAAATAtcctttttgtgttcaacagaagaaagaaacttataaaggtttaaaaagcaGTTGGCGGAACGATCCCTTTAAATATAACTGAATAGAAAAACAAGACATTCAGCAGATGATATTTTGTTTATCATGTAGCATTAATTTGCATGTATTGCATCTGCAGGGATTTTGTAATACTAATATtctaataaaaagtttattcagTCTT
>TCONS_00006352
ACTAATTAAACGCCATTCATGTTCTTCGTATAACGACACGAGTTTATTTTAAGTCACCATGTTTGCCATATTTACAAAGATTAAGGACCGCGTCGAGGCTTTTTTAAACGAGAAGAATATTGTCACCGACTGTCTCaataaaattgaagaaaaaaCTGGTATCAAGAAACGTTACTTAGCGTACGGTGCTGCAGGTGTGACTGgagcatttttattattaggatACGGCGCTTCTCTGATCTGTAATCTGATTGGCTTTGTTTATCCTGCATATTTCTCtatCAAAGCCATAGAAAGTCCTGGTAAAGAGGATGACACGCAGTGGCTCACGTACTGGGTAATCTACGGCTTCTTCAGCGTGGGAGAATTCTTCTCGGATATCTTTCTTCACTGGTTTCCATTCTACTATGTATGCAAGTGCCTGTTCCTGTTGTGGTGTATGGCTCCGGTCTCCTGGAATGGTTCTCAGGTTCTGTATAGGCATGTGGTCCGTCCATTTTTCCTGAAGCACGAAGCCGCAGTAGACGGGATGGTCAGCAATATAAGCGTGAAGGCCATGTCAGCAGCTGAGAACGTCACGAGAGAAGTCCTTCACACTCTGGTAAGAAACCGGACTGTTGGCCCAGCTGAGTCTGAACCCAGAAGCCTGCCTAGTTCTGCTCATACTGAACCCACTGTTGATTAAACAGTAAGTTTTCAGTATGTGTATGTGAGaTGTACAGGCGGCCAAAGTGATCTAAGAAGACAGAATACAACACGACATGCAAGAGATTGGTGAAAACCTAAACAAAACTTTGACAACAGAAGTATTATATAGTCTCATTGCAAAGACCTCACTGAGTGAAT
>TCONS_00006353
AATTAAACGCCATTCATGTTCTTCGTATAACGACACGAGTTTATTTTAAGTCACCATGTTTGCCATATTTACAAAGATTAAGGACCGCGTCGAGGCTTTTTTAAACGAGAAGAATATTGTCACCGACTGTCTCaataaaattgaagaaaaaaCTGGTATCAAGAAACGTTACTTAGCGTACGGTGCTGCAGGTGTGACTGgagcatttttattattaggatACGGCGCTTCTCTGATCTGTAATCTGATTGGCTTTGTTTATCCTGCATATTTCTCtatCAAAGCCATAGAAAGTCCTGGTAAAGAGGATGACACGCAGTGGCTCACGTACTGGGTAATCTACGGCTTCTTCAGCGTGGGAGAATTCTTCTCGGATATCTTTCTTCACTGGTTTCCATTCTACTATGTATGCAAGTGCCTGTTCCTGTTGTGGTGTATGGCTCCGGTCTCCTGGAATGGTTCTCAGGTTCTGTATAGGCATGTGGTCCGTCCATTTTTCCTGAAGCACGAAGCCGCAGTAGACGGGATGGTCAGCAATATAAGCGTGAAGGCCATGTCAGCAGCTGAGAACGTCACGAGAGAAGTCCTTCACACTCTGGTAAGAAACCGGACTGTTGGCCCAGCTGAGTCTGAACCCAGAAGCCTGCCTAGTTCTGCTCATACTGAACCCACTGTTGATTAAACAaTGTACAGGCGGCCAAAGTGATCTAAGAAGACAGAATACAACACGACATGCAAGAGATTGGTGAAAACCTAAACAAAACTTTGACAACAGAAGTATTATATAGTCTCATTGCAAAGACCTCACTGAGTGAATGGTAATTCACCTTCATCTGCACTATTTTAGACGTAGTGTTTTGTCAAAGGTGGAGTTCTGGAGTTCAACGGTTaatattgaagtgctatgaatactttctggatgcactgtatatctgCTTATAATTAGAATATGTCAGTGTCctcaacacaatagtttggaagTCATTTGTTGTTCACTGCACATATTTCGTCCACTGGCATTTAAAGGGAAAATTCagccaaaaatctaaattctgtcatcatttactcactcttcaaaTGTTCAGAACCTATTTGAGTTCCTTCAAGtagaatatatttttgtaaatgctGGTAGTTGACACCCTATGACTTCAACAGGCTCCAGTAACCTGCATTCTTCAAAAAATAtcctttttgtgttcaacagaagaaagaaacttataaaggtttaaaaagcaGTTGGCGGAACGATCCCTTTAAATATAACTGAATAGAAAAACAAGACATTCAGCAGATGATATTTTGTTTATCATGTAGCATTAATTTGCATGTATTGCATCTGCAGGGATTTTGTAATACTAATATtctaataaaaagtttattcagTCTTTCTATTGAA
>TCONS_00006354
ATTGGCTTTGTTTATCCTGCATATTTCTCtatCAAAGCCATAGAAAGTCCTGGTAAAGAGGATGACACGCAGTGGCTCACGTACTGGGTAATCTACGGCTTCTTCAGCGTGGGAGAATTCTTCTCGGATATCTTTCTTCACTGGTTTCCATTCTACTATGTATGCAAGTGCCTGTTCCTGTTGTGGTGTATGGCTCCGGTCTCCTGGAATGGTTCTCAGGTTCTGTATAGGCATGTGGTCCGTCCATTTTTCCTGAAGCACGAAGCCGCAGTAGACGGGATGGTCAGCAATATAAGCGTGAAGGCCATGTCAGCAGCTGAGAACGTCACGAGAGAAGTCCTTCACACTCTGGTAAGAAACCGGACTGTTGGCCCAGCTGAGTCTGAACCCAGAAGCCTGCCTAGTTCTGCTCATACTGAACCCACTGTTGATTAAACAaTGTACAGGCGGCCAAAGTGATCTAAGAAGACAGAATACAACACGACATGCAAGAGATTGGTGAAAACCTAAACAAAACTTTGACAACAGAAGTATTATATAGTCTCATTGCAAAGACCTCACTGAGTGAATGGTAATTCACCTTCATCTGCACTATTTTAGACGTAGTGTTTTGTCAAAGGTGGAGTTCTGGAGTTCAACGGTTaatatgtacagtgcatccgaaacgtgttcatagcgcttcactttttccacattttttttatgttacagccttattccaaaatggattaaattattttttttttctcataattctacacacaataccccataatgacaatgtgaaaaaagagtttttgaaatggttgcaaattta

Function

symbol description
reep6 Involved in embryonic retina morphogenesis in camera-type eye. Acts upstream of or within retina layer formation. Predicted to be located in clathrin-coated vesicle membrane and endoplasmic reticulum membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in retinitis pigmentosa 77. Orthologous to human REEP6 (receptor accessory protein 6).

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0010842 retina layer formation biological_process
GO:0060059 embryonic retina morphogenesis in camera-type eye biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0030665 clathrin-coated vesicle membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040912-98 Involved in embryonic retina morphogenesis in camera-type eye. Acts upstream of or within retina layer formation. Predicted to be located in clathrin-coated vesicle membrane and endoplasmic reticulum membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in retinitis pigmentosa 77. Orthologous to human REEP6 (receptor accessory protein 6).

Ensembl:

ensembl_id ENSDARG00000087349

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006351 False 1412 mRNA 0.39 8 7261981 7274369
TCONS_00006352 False 846 mRNA 0.43 7 7262001 7272056
TCONS_00006353 False 1399 nonsense_mediated_decay 0.39 8 7262004 7274378
TCONS_00006354 True 817 mRNA 0.42 6 7264457 7272303

Neighbor

gene id symbol gene type direction distance location
XLOC_003221 nwd1 coding upstream 14994 7214353 ~ 7246987 (+)
XLOC_003220 thop1 coding upstream 49884 7183025 ~ 7212097 (+)
XLOC_003219 tmem38a coding upstream 82465 7158723 ~ 7179516 (+)
XLOC_003217 NA coding upstream 109974 7149071 ~ 7152007 (+)
XLOC_003218 CU929070.2 coding upstream 111075 7150820 ~ 7150906 (+)
XLOC_003223 si:ch73-238c9.1 coding downstream 2446 7276824 ~ 7280259 (+)
XLOC_003224 NA coding downstream 6861 7281239 ~ 7286310 (+)
XLOC_003225 diras1a coding downstream 50326 7324704 ~ 7341807 (+)
XLOC_003226 adgrl2a coding downstream 158155 7432533 ~ 7737642 (+)
XLOC_003227 CR450813.2 coding downstream 508136 7782514 ~ 7783314 (+)
XLOC_003250 BX324177.11 misc downstream 4071425 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 4098508 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 4111984 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 4143655 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 4155015 11429393 ~ 11429689 (+)
XLOC_003216 CR925817.1 non-coding upstream 158445 7095176 ~ 7103536 (+)
XLOC_003215 FQ976909.1 non-coding upstream 305602 6946591 ~ 6956379 (+)
XLOC_003212 BX936438.2 non-coding upstream 399613 6862252 ~ 6862368 (+)
XLOC_003228 NA non-coding downstream 550975 7825353 ~ 7826072 (+)
XLOC_003229 NA non-coding downstream 605764 7880142 ~ 7971030 (+)
XLOC_003234 CR847563.1 non-coding downstream 1303676 8578054 ~ 8580557 (+)

Expression


Co-expression Network