XLOC_003231 (samd13)


Basic Information

Item Value
gene id XLOC_003231
gene name samd13
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 8152872 ~ 8161149 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006371
TACATTACCCATGAACCCCTGCGTCTGCATTTGTTGGATTGTACTGGAAAAAAGCGTAATATTGTATCAATGATCTTCAACCAGTAATATTAACACCATCTacataaaacatctaaaaaaattgTGTTTTGCAGCTACCACAACAATTATTCATAAACTTGGAGGTCTACTATACATGTTTATCGACAATGGGGTCAGTTTGGCACAGCGGGAGACTGAAGAAGATGGCATGAGCAGCACAAGAGGATAGAACACCTTTAATGGAATAGAGCAGCCTCATCTTTCTGACAAACAGCAGTCATGGAAACCAAGGAAAATGGTTCAGTGGAGACCAAAAATTCTGTGGAGAATGGGCAGCTTACTGATCCAGCCCACTGGGCCGTAGCGGATGTGGTCAATTATTTTAAAGCGACAGGGTTTGAGGAGCAAGCCAACGCTTTCCAGGATCAGGAAATCGACGGCAAATCCCTTTTATTAATGACTCGTAACGACGTTCTGACCGGACTTTCGATAAAACTGGGTCCTGCACTGAAGATATACGAGTATCATGTCAAGCCTCTCCAAACCCAACACTTAAAAAGTAACGTCTCGTAGCCGCTGCCGCTGCGTGGACACACGGAAGACAATCACAGCAGGGTAACTGCAGACAAAACTAACACACATTTGATGCATCttgaagaaaaacacacacacacacacatggtgaaTTATTGCTTTTAACGCCTCGTTCAGCATTACAGGCACACTTACTGTTTTCACTTTACCTTTGTTTAATAGTGTGTTCGTTCGGGTTTTGATTTTGTGTGCTTGTACATAACTCATTATTGCTTTTAAGGTTAAATTCTTACTTTAATAAAAGTGAACTGTGATgtaaaattggagaaaaaaaaaatgaaactcgACCCTTAAAGATGTTTCAGTGTAACGCGTGATGAAGTTTAATTGAAGAGGGACATTCATGTCACAGTTGATTTGATGGTTTGTTGGTGGTTgctttcctttttgttttttccaGTTTTTAACAATCTGTTGATATACAAACTGATCGGATGTTCTGAAAATGATAGATTTGCTGTGGTTTACAGCTATAAAGGCTCAACGGATGACGGGTTTGTTTGCAGGAATGCTGCCGGGATGACAGGCCTTTGTGCTgttataaattctgtttatttatttaattctgtaaCTAACAGTGTGATTCCTAATGGATTGGTGAATTGTTGTTGTTGACAGATACGCTGCGACTCTGAAGCAGCTTGTGATACAGGGTGTTTTAAAAAGGTGAAACGAATGTGAGTGTAGCCTGCAATAAATGGTGCTTTTTCAGATTGCTGAAAAAAA
>TCONS_00006372
ATGAACCCCTGCGTCTGCATTTGTTGGATTGTACTGGAAAAAAGCGTAATATTGTATCAATGATCTTCAACCAGTAATATTAACACCATCTacataaaacatctaaaaaaattgTGTTTTGCAGCTACCACAACAATTATTCATAAACTTGGAGGTCTACTATACATGTTTATCGACAATGGGGTCAGTTTGGCACAGCGGGAGACTGAAGAAGATGGCATGAGCAGCACAAGAGGATAGAACACCTTTAATGGAATAGAGCAGCCTCATCTTTCTGACAAACAGTCATGGAAACCAAGGAAAATGGTTCAGTGGAGACCAAAAATTCTGTGGAGAATGGGCAGCTTACTGATCCAGCCCACTGGGCCGTAGCGGATGTGGTCAATTATTTTAAAGCGACAGGGTTTGAGGAGCAAGCCAACGCTTTCCAGGATCAGGAAATCGACGGCAAATCCCTTTTATTAATGACTCGTAACGACGTTCTGACCGGACTTTCGATAAAACTGGGTCCTGCACTGAAGATATACGAGTATCATGTCAAGCCTCTCCAAACCCAACACTTAAAAAGTAACGTCTCGTAGCCGCTGCCGCTGCGTGGACACACGGAAGACAATCACAGCAGGGTAACTGCAGACAAAACTAACACACATTTGATGCATCttgaagaaaaacacacacacacacacatggtgaaTTATTGCTTTTAACGCCTCGTTCAGCATTACAGGCACACTTACTGTTTTCACTTTACCTTTGTTTAATAGTGTGTTCGTTCGGGTTTTGATTTTGTGTGCTTGTACATAACTCATTATTGCTTTTAAGGTTAAATTCTTACTTTAATAAAAGTGAACTGTGATgtaaaattgga
>TCONS_00006373
CATCTacataaaacatctaaaaaaattgTGTTTTGCAGCTACCACAACAATTATTCATAAACTTGGAGGTCTACTATACATGTTTATCGACAATGGGGTCAGTTTGGCACAGCGGGAGACTGAAGAAGATGGCATGAGCAGCACAAGAGGATAGAACACCTTTAATGGAATAGAGCAGCCTCATCTTTCTGACAAACAGCAGTCATGGAAACCAAGGAAAATGGTTCAGTGGAGACCAAAAATTCTGTGGAGAATGGGCAGCTTACTGATCCAGCCCACTGGGCCGTAGCGGATGTGGTCAATTATTTTAAAGCGACAGGGTTTGAGGAGCAAGCCAACGCTTTCCAGGATCAGGAAATCGACGGCAAATCCCTTTTATTAATGACTCGTAACGACGTTCTGACCGGACTTTCGATAAAACTGGGTCCTGCACTGAAGATATACGAGTATCATGTCAAGCCTCTCCAAACCCAACACTTAAAAAGTAACGTCTCGTAGCCGCTGCCGCTGCGTGGACACACGGAAGACAATCACAGCAGGTGCCTGTGATGTTTCCTGATGGATTATCAAGAGGAAGATAAACCTGAAagatatatatttacatgtaataCTTAGAAAATAATACTCCACATATCCATTATATTCTAAGGTGAAATGGGAAAAACATTCGTTATGTTCATATGTGTGTGGTTTTTCGAAA

Function

symbol description
samd13 Predicted to enable chromatin binding activity and histone binding activity. Predicted to be involved in negative regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human SAMD13 (sterile alpha motif domain containing 13).

GO:

id name namespace
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0042393 histone binding molecular_function
GO:0003682 chromatin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-676 Predicted to enable chromatin binding activity and histone binding activity. Predicted to be involved in negative regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human SAMD13 (sterile alpha motif domain containing 13).

Ensembl:

ensembl_id ENSDARG00000062977

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006371 False 1341 mRNA 0.40 5 8152872 8157495
TCONS_00006372 False 868 mRNA 0.41 5 8152882 8157035
TCONS_00006373 True 700 mRNA 0.42 6 8152968 8161149

Neighbor

gene id symbol gene type direction distance location
XLOC_003230 prkacba coding upstream 1978 8129536 ~ 8150894 (+)
XLOC_003229 NA coding upstream 181842 7880142 ~ 7971030 (+)
XLOC_003228 NA coding upstream 326800 7825353 ~ 7826072 (+)
XLOC_003227 CR450813.2 coding upstream 369558 7782514 ~ 7783314 (+)
XLOC_003226 adgrl2a coding upstream 415230 7432533 ~ 7737642 (+)
XLOC_003232 dnase2b coding downstream 9799 8170948 ~ 8179145 (+)
XLOC_003233 tbl1xr1a coding downstream 404174 8565323 ~ 8682447 (+)
XLOC_003234 CR847563.1 coding downstream 416905 8578054 ~ 8580557 (+)
XLOC_003235 NA coding downstream 514820 8675969 ~ 8677720 (+)
XLOC_003236 CABZ01079837.1 coding downstream 1350384 9511533 ~ 9522073 (+)
XLOC_003250 BX324177.11 misc downstream 3184654 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 3211737 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 3225213 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 3256884 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 3268244 11429393 ~ 11429689 (+)
XLOC_003224 NA non-coding upstream 866562 7281239 ~ 7286310 (+)
XLOC_003218 CU929070.2 non-coding upstream 1001966 7150820 ~ 7150906 (+)
XLOC_003237 NA non-coding downstream 1440596 9601745 ~ 9603070 (+)
XLOC_003238 BX005472.1 non-coding downstream 1737364 9898513 ~ 9898630 (+)

Expression


Co-expression Network