XLOC_003235


Basic Information

Item Value
gene id XLOC_003235
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 8675969 ~ 8677720 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008549
agatgtgtttggaagcaattcgtaacattttaataatattttggcaaattgaaccaaatgaacgaaatgactcgaaaaaagattcattcatcttgatgaacgagactcaaagatccgagtcagtaaaatgatccaaacttcccatcaccAAAACACACGCTTGCAACTCTCAATATATGCATACAATCCATGCGCCTACATTGAAATTAATGGACTTGTGCGTACAAAAGGCGAGATATGTGAATGGCCTATTTCACAGCAGCATCACAACGAGGTCTATGATCTATGCTTAAGAACAAGTCTGTAAACACACACGCAACTACTTCTGATATTTGGTCAAGCAGAACATCAGAgcgttagttGAGATTGACAGTGCGCTTgcatgctcacacatacacacacatttgttttgtcATGGGTCTGTTCTATAGACAATTTATTATAGCTTTACTAGCtgatttttattcaatttagatTAAATCTGTTGTAGAGACATGTCAGAGACAGGTCTTTGATAAAGatctaattgtttttcttttgaaaaatgaT

Function

GO:

id name namespace
GO:0090085 regulation of protein deubiquitination biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008549 True 549 lncRNA 0.36 2 8675969 8677720

Neighbor

gene id symbol gene type direction distance location
XLOC_003234 CR847563.1 coding upstream 95412 8578054 ~ 8580557 (+)
XLOC_003232 dnase2b coding upstream 496824 8170948 ~ 8179145 (+)
XLOC_003231 samd13 coding upstream 514820 8152872 ~ 8161149 (+)
XLOC_003230 prkacba coding upstream 525075 8129536 ~ 8150894 (+)
XLOC_003229 NA coding upstream 704939 7880142 ~ 7971030 (+)
XLOC_003236 CABZ01079837.1 coding downstream 833813 9511533 ~ 9522073 (+)
XLOC_003237 NA coding downstream 924025 9601745 ~ 9603070 (+)
XLOC_003238 BX005472.1 coding downstream 1220793 9898513 ~ 9898630 (+)
XLOC_003239 CT990625.1 coding downstream 1857736 10535456 ~ 10537403 (+)
XLOC_003240 b3gnt5a coding downstream 1863538 10541258 ~ 10550377 (+)
XLOC_003250 BX324177.11 misc downstream 2668083 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 2695166 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 2708642 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 2740313 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 2751673 11429393 ~ 11429689 (+)
XLOC_003228 NA non-coding upstream 849897 7825353 ~ 7826072 (+)
XLOC_003227 CR450813.2 non-coding upstream 892655 7782514 ~ 7783314 (+)
XLOC_003224 NA non-coding upstream 1389659 7281239 ~ 7286310 (+)
XLOC_003241 NA non-coding downstream 1991415 10669135 ~ 10673008 (+)

Expression


Co-expression Network