XLOC_003236 (CABZ01079837.1)


Basic Information

Item Value
gene id XLOC_003236
gene name CABZ01079837.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 9511533 ~ 9522073 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006381
ATGGTTACCCCAGTGAATGCCACGCACCATTTCCACTCTTCGAACAAACACTACAGGTCTTTTCTTTACAGCTTTTGTCTGGTTCCCCTCGTCCAACTAGGGTCAGAGCAGGACAGTaagtgtcctgagtggttgctgtTTTTCACACTAAGGAACTGCCTGTGCTGGTTTGGATGTGCAGCCATTCCCACACTGAGGCTCGAGACAATGACGTCACGGCCCACAGGAAGAGAAGAGCAAGTTAAGAAACGTAATATGACTGACAAATGATCAGCAAATGATCTTTCGCTTGTTCATAATGCTCACGGAAGTAAAAACACCCAGAAAGAGCGATCGCTAAAAGCAGCTAATGCTAATCAGATCACATAAATCTGTGTAAAAATGCATAGAAAGAGTGTTGcaaaatgcaagtaaaaaaactaaagtatataAGCTAAATTGTATAAGCTACTTCACTACTCTCCAGTATTTATAGCAACTTATATGAATAGAGTGACAAATTGCATAGCATTGAtaatgtaattatcaatatttcgCCATGTAATTTCACAAAACTGCATTAAATCAACATACAAACAGAATTATGTTGCAGTTGTATAATCATTGGCTTCATCTTTCACATGCAGAAATGTTCCTCTGCATTCGTTTACATCCATTCCCACACTGAGGCTCGAGACAATGGCGTCACGGCTCACAGAAAGAGAAGAGCAAGTTAAGAAACGTAATATGATTGACAAATGATCACCAAATGATCCTTCGCTTGTTCATAATGCTCACGGAAGTAAAAACACCCGGAAAGATCGATCGCTAAAAGCAGCTAATGCTAATCAGATTACATAAATCTGAGTAAAATGCATAGAAAATGTGTTGCTACAAAatgtaagtaaaacaaaatgtgcaaataagtaagtaaatgtaCCTCCAGACTAAAAGCCCACCTGCATGCTGTATAATAAAAATCTGTTAACAGAAATAAACGAGACGTGACTAAACATCTCTGTGTAAATGTTGTTTTTCAATACAGCATACAACATGTTATAGACTGCAACAAGTCAACAAAGAAAATATTGAAACTGGAGTCCTAAACCTTTCTGACCATGCTGTCCAGGTCACATAATAAATGTGCGTGGCATTAGCTTGCAGTGAATGAATTTACAGAATACTTTTAGGCAGTCGGTGATCTTTGCATGTTAAATATGCTAACTTATATCtcaactttgcaatgcagcgaactaAAAAACTTGTCGCACATGCTTCCGTTTTCGGTCTGACAcatttgcgtgcatatgaatggaagtctatggtgaGAAAAGTGCAAAGTGAGCACAACTTAAAGCTGGTTTCAGTAAATCTCCAGCATGTGCATTCAGATGTAACAGAATTTATTACAGCCATAGAGTCATTGTTCACTGATAAGCAATTTTAAAAATCGTTTTAAAATGGAATTTGATAATAATATCAAGATAATTGAGTGATAATCACAGCTGTTTGCTTAGCTTCTCAATTCACTATGGCTTTGTGTAAAT
>TCONS_00006383
ATGGTTACCCCAGTGAATGCCACGCACCATTTCCACTCTTCGAACAAACACTACAGGTCTTTTCTTTACAGCTTTTGTCTGGTTCCCCTCGTCCAACTAGGGTCAGAGCAGGACAGTaagtgtcctgagtggttgctgtTTTTCACACTAAGGAACTGCCTGTGCTGGTTTGGATGTGCAGCCATTCCCACACTGAGGCTCGAGACAATGACGTCACGGCCCACAGGAAGAGAAGAGCAAGTTAAGAAACTGGATTTTCTTTCAGGCGGCATGTGGTGTTTAAGTCAGAGGTCAGATCTCTCCTGCTGCCCGTCCAGTGAGGTCACAGCATCAGACTGCTACGCCTGACTGTCTTCTGGAGCCACCATCCATAATCTAAAGAACCCAGGGAAGAGGCCAAAAACCTGTCAGTACGACACCGGCTTCAAACTGCGAAGCTGAGGATGCCATAGGGAACAAACTAAGGCAACCGAGCAAATATGATATTTATacaaattttcagattaaaagcaagattttttttgtttgtttgttttatcttcTACATCTTTGAATTGTATCTACCAATTCTTTGTGTAAAACATAGCATTCATTTAACGTGTAAAGGCTAAATATCATAATTTATTATGCacattttaattatgaaaaatatcCAATTCATATTTAAATGGCATGCACTCAAAGCAAAACTTTTTAGTTCATATTTTTACTTAATTACAGCATTGTGTTCTTTTTCATGTTACTGATTATCTACAGTAtggtaaaatacaaattaatttcaAACTTACGTGAAACGTGTCATCCTCTGAATGTAGCAACATCCAATCACGGTGGTCTTCTGAGGTATGGGTCTTAACTCCAACATATTCCtgacaataaaaattaaacagacaTCAAATCTGAATTCACAAGCTTCCGGATGTCATCTTTTTTGCGTTTGAACGCAGAAGGCAGCAACTCATTAGCAGAGCAAGTCCCTTCtaatgtattctatagtctttggtactAAGccagaaaacttttgttttcaaaagatgTCAGCTGAACTCAAAGTGGATTTAAAATGAGCCTAATGTTTCTGAGAAGCAAGTATTTGTGAAAAcctattttttccagacacatttgcCAGTCATGTTGATAGATATCTATCAATGACAGCACTTAAAAAGAAAGTATTTCCTGTCGG
>TCONS_00006382
ATGGTTACCCCAGTGAATGCCACGCACCATTTCCACTCTTCGAACAAACACTACAGGTCTTTTCTTTACAGCTTTTGTCTGGTTCCCCTCGTCCAACTAGGGTCAGAGCAGGACAGTaagtgtcctgagtggttgctgtTTTTCACACTAAGGAACTGCCTGTGCTGGTTTGGATGTGCAGTGGATTTTCTTTCAGGCGGCATGTGGTGTTTAAGTCAGAGGTCAGATCTCTCCTGCTGCCCGTCCAGTGAGGTCACAGCATCAGACTGCTACGCCTGACTGTCTTCTGGAGCCACCATCCATAATCTAAAGAACCCAGGGAAGAGGCCAAAAACCTGTCAGTACGACACCGGCTTCAAACTGCGAAGCTGAGGATGCCATAGGGAACAAACTAAGGCAACCGAGCAAATATGATATTTATacaaattttcagattaaaagcaagattttttttgtttgtttgttttatcttcTACATCTTTGAATTGTATCTACCAATTCTTTGTGTAAAACATAGCATTCATTTAACGTGTAAAGGCTAAATATCATAATTTATTATGCacattttaattatgaaaaatatcCAATTCATATTTAAATGGCATGCACTCAAAGCAAAACTTTTTAGTTCATATTTTTACTTAATTACAGCATTGTGTTCTTTTTCATGTTACTGATTATCTACAGTAtggtaaaatacaaattaatttcaAACTTACGTGAAACGTGTCATCCTCTGAATGTAGCAACATCCAATCACGGTGGTCTTCTGAGGTATGGGTCTTAACTCCAACATATTCCtgacaataaaaattaaacagacaTCAAATCTGAATTCACAAGCTTCCGGATGTCATCTTTTTTGCGTTTGAACGCAGAAGGCAGCAACTCATTAGCAGAGCAAGTCCCTTCtaatgtattctatagtctttggtactAAGccagaaaacttttgttttcaaaagatgTCAGCTGAACTCAAAGTGGATTTAAAATGAGCCTAATGTTTCTGAGAAGCAAGTATTTGTGAAAAcctattttttccagacacatttgcCAGTCATGTTGATAGATATCTATCAATGACAGCACTTAAAAAGAAAGTATTTCCTGTCGG
>TCONS_00008389
TAGAAGTGTTCCTCTGCATTTGTTTACAGCCATTCCCACACTGAGGCTCGAGACAATGACGTCACGGCCCACAGGAAGAGAAGAGCAAGTTAAGAAACTGGATTTTCTTTCAGGCGGCATGTGGTGTTTAAGTCAGAGGTCAGATCTCTCCTGCTGCCCGTCCAGTGAGGTCACAGCATCAGACTGCTACGCCTGACTGTCTTCTGGAGCCACCATCCATAATCTAAAGAACCCAGGGAAGAGGCCAAAAACCTGTCAGTACGACACCGGCTTCAAACTGCGAAGCTGAGGATGCCATAGGGAACAAACTAAGGCAACCGAGCAAATATGATATTTATacaaattttcagattaaaagcaagattttttttgtttgtttgttttatcttcTACATCTTTGAATTGTATCTACCAATTCTTTGTGTAAAACATAGCATTCATTTAACGTGTAAAGGCTAAATATCATAATTTATTATGCacattttaattatgaaaaatatcCAATTCATATTTAAATGGCATGCACTCAAAGCAAAACTTTTTAGTTCATATTTTTACTTAATTACAGCATTGTGTTCTTTTTCATGTTACTGATTATCTACAGTAtggtaaaatacaaattaatttcaAACTTACGTGAAACGTGTCATCCTCTGAATGTAGCAACATCCAATCACGGTGGTCTTCTGAGGTATGGGTCTTAACTCCAACATATTCCtgacaataaaaattaaacagacaTCAAATCTGAATTCACAAGCTTCCGGATGTCATCTTTTTTGCGTTTGAACGCAGAAGGCAGCAACTCATTAGCAGAGCAAGTCCCTTCtaatgtattctatagtctttggtactAAGccagaaaacttttgttttcaaaagatgTCAGCTGAACTCAAAGTGGATTTAAAATGAGCCTAATGTTTCTGAGAAGCAAGTATTTGTGAAAAcctattttttccagacacatttgcCAGTCATGTTGATAGATATCTATCAATGACAGCACTTAAAAAGAAAGTATTTCCTGTCGG
>TCONS_00008550
TGGACATAAATGCATGCTGTACTCTGTACTGTAATGAACTGTACTGCTCAGTAGAAACAAGCCATCAAAGCTAAGTGGATTTTCTTTCAGGCGGCATGTGGTGTTTAAGTCAGAGGTCAGATCTCTCCTGCTGCCCGTCCAGTGAGGTCACAGCATCAGACTGCTACGCCTGACTGTCTTCTGGAGCCACCATCCATAATCTAAAGAACCCAGGGAAGAGGCCAAAAACCTGTCAGTACGACACCGGCTTCAAACTGCGAAGCTGAGGATGCCATAGGGAACAAACTAAGGCAACCGAGCAAATATGATATTTATacaaattttcagattaaaagcaagattttttttgtttgtttgttttatcttcTACATCTTTGAATTGTATCTACCAATTCTTTGTGTAAAACATAGCATTCATTTAACGTGTAAAGGCTAAATATCATAATTTATTATGCacattttaattatgaaaaatatcCAATTCATATTTAAATGGCATGCACTCAAAGCAAAACTTTTTAGTTCATATTTTTACTTAATTACAGCATTGTGTTCTTTTTCATGTTACTGATTATCTACAGTAtggtaaaatacaaattaatttcaAACTTACGTGAAACGTGTCATCCTCTGAATGTAGCAACATCCAATCACGGTGGTCTTCTGAGGTATGGGTCTTAACTCCAACATATTCCtg

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0048732 gland development biological_process
GO:0048468 cell development biological_process
GO:0021546 rhombomere development biological_process
GO:0072359 circulatory system development biological_process
GO:0043009 chordate embryonic development biological_process
GO:0006935 chemotaxis biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0000902 cell morphogenesis biological_process
GO:0000904 cell morphogenesis involved in differentiation biological_process
GO:0021593 rhombomere morphogenesis biological_process
GO:0035295 tube development biological_process
GO:0030182 neuron differentiation biological_process
GO:0048812 neuron projection morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0120039 plasma membrane bounded cell projection morphogenesis biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048858 cell projection morphogenesis biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0048869 cellular developmental process biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0032990 cell part morphogenesis biological_process
GO:0035904 aorta development biological_process
GO:0033278 cell proliferation in midbrain biological_process
GO:0021953 central nervous system neuron differentiation biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0097485 neuron projection guidance biological_process
GO:0061564 axon development biological_process
GO:0033564 anterior/posterior axon guidance biological_process
GO:0048666 neuron development biological_process
GO:0050793 regulation of developmental process biological_process
GO:0048667 cell morphogenesis involved in neuron differentiation biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0007409 axonogenesis biological_process
GO:0007411 axon guidance biological_process
GO:0042330 taxis biological_process
GO:0007417 central nervous system development biological_process
GO:0007420 brain development biological_process
GO:0022008 neurogenesis biological_process
GO:0030902 hindbrain development biological_process
GO:0048699 generation of neurons biological_process
GO:0031175 neuron projection development biological_process
GO:0061351 neural precursor cell proliferation biological_process
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0005509 calcium ion binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117688

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006381 False 1526 lncRNA 0.37 2 9511533 9520179
TCONS_00006383 False 1186 lncRNA 0.39 3 9511533 9522073
TCONS_00006382 False 1117 lncRNA 0.38 2 9511533 9522073
TCONS_00008389 False 1034 lncRNA 0.37 2 9518806 9522073
TCONS_00008550 True 697 lncRNA 0.37 2 9520744 9521759

Neighbor

gene id symbol gene type direction distance location
XLOC_003233 tbl1xr1a coding upstream 829086 8565323 ~ 8682447 (+)
XLOC_003235 NA coding upstream 833813 8675969 ~ 8677720 (+)
XLOC_003234 CR847563.1 coding upstream 930976 8578054 ~ 8580557 (+)
XLOC_003232 dnase2b coding upstream 1332388 8170948 ~ 8179145 (+)
XLOC_003231 samd13 coding upstream 1350384 8152872 ~ 8161149 (+)
XLOC_003237 NA coding downstream 79672 9601745 ~ 9603070 (+)
XLOC_003238 BX005472.1 coding downstream 376440 9898513 ~ 9898630 (+)
XLOC_003239 CT990625.1 coding downstream 1013383 10535456 ~ 10537403 (+)
XLOC_003240 b3gnt5a coding downstream 1019185 10541258 ~ 10550377 (+)
XLOC_003241 NA coding downstream 1147062 10669135 ~ 10673008 (+)
XLOC_003250 BX324177.11 misc downstream 1823730 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 1850813 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 1864289 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 1895960 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 1907320 11429393 ~ 11429689 (+)
XLOC_003229 NA non-coding upstream 1540503 7880142 ~ 7971030 (+)
XLOC_003228 NA non-coding upstream 1685461 7825353 ~ 7826072 (+)
XLOC_003227 CR450813.2 non-coding upstream 1728219 7782514 ~ 7783314 (+)
XLOC_003252 BX324177.5 non-coding downstream 1831386 11353459 ~ 11380887 (+)

Expression


Co-expression Network