trnac-gca-11


Basic Information

Item Value
gene id trnac-gca-11
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 25556516 ~ 25556587 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>trnac-gca-11
gggggtatagctcagtggtagagcatttgactgcagatcaagaggtccccgGTTCAAATCCAGGTGCCCCCT

Function

NR:

description
cilia- and flagella-associated protein 157

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnac-gca-11 True 72 mRNA 0.53 1 25556516 25556587

Neighbor

gene id symbol gene type direction distance location
LOC110492860 LOC106579120 coding downstream 157032 25396529 ~ 25399484 (-)
tectb tectb coding downstream 170739 25368533 ~ 25385777 (-)
acsl5 acsl5 coding downstream 308864 25213926 ~ 25247652 (-)
kansl1a LOC106579123 coding downstream 400261 25096486 ~ 25156255 (-)
ghrhr2 LOC106579361 coding downstream 522525 25025557 ~ 25033991 (-)
LOC110491719 LOC106579113 coding upstream 36278 25592865 ~ 25615004 (-)
LOC110491723 NA coding upstream 91182 25647763 ~ 25655273 (-)
LOC110491722 NA coding upstream 131345 25687932 ~ 25692503 (-)
acbd4 LOC106579108 coding upstream 146341 25702829 ~ 25718286 (-)
LOC110491727 cssa19h17orf105 coding upstream 223608 25780195 ~ 25784225 (-)
G1356458 NA non-coding downstream 121681 25434380 ~ 25434835 (-)
G1356457 NA non-coding downstream 122818 25432908 ~ 25433698 (-)
G1356105 NA non-coding downstream 260874 25295410 ~ 25295642 (-)
G1356090 NA non-coding downstream 269815 25286427 ~ 25286701 (-)
G1356076 NA non-coding downstream 278519 25277704 ~ 25277997 (-)
G1356557 NA non-coding upstream 38173 25594760 ~ 25662776 (-)
G1356948 LOC106579103 non-coding upstream 333769 25890356 ~ 25890733 (-)
G1357039 NA non-coding upstream 383341 25939928 ~ 25940150 (-)
LOC110491708 LOC106561205 other downstream 667872 24884866 ~ 24889077 (-)
LOC110492858 LOC106579369 other downstream 1522106 23995179 ~ 24034410 (-)
G1354433 LOC106581475 other downstream 2097969 23451825 ~ 23458547 (-)
G1354351 NA other downstream 2237124 23318569 ~ 23319392 (-)
G1353762 NA other downstream 2511755 23043249 ~ 23044761 (-)
G1357833 NA other upstream 1170708 26727295 ~ 26727828 (-)
LOC110491745 LOC106609103 other upstream 1172717 26729304 ~ 26744821 (-)
G1359119 NA other upstream 1555196 27111783 ~ 27113401 (-)
G1359321 NA other upstream 1800697 27357284 ~ 27359562 (-)
G1359412 NA other upstream 1970576 27527163 ~ 27528137 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) trnav-cac_14 NA coding NC_053135.1 CM020932.1 15789648 ~ 15789719 (-)
tiger barb (Puntius tetrazona) trnac-gca_100 NA coding NC_056709.1 CM032078.1 1157654 ~ 1157725 (-)