XLOC_003237


Basic Information

Item Value
gene id XLOC_003237
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 9601745 ~ 9603070 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008551
GCACAGACATTTGCAGGTaagtttaatgttaaataacGTATTGTAAATATCCGTTGGGTCATATTCAATTCATATTTGACGTTACTTTGCCTTGTGTATGTAGTTAAGATTAACATTACCGTCGAGTTACCTGCTGCGTGAGGGGACCCTTTTGTAATTTAAGGTTGGCcagaaattaaaatatgattttttacatAACCTGGCCATGAGACAAAGCTCGAGACACTGGTAAAACAGCGGTGAAACGTCCAGAGAAACAGTTCAAACACATTTAAGTTAGTTTTGTTTGGATAATGTGGTTAAGTCTTTATTGCAAACGTTATTCATAAATTCAGAATTTCCTTAGTGTTGGGAAGCTAACATTCATGCTAACGTTCATGTTTATTTCGGAAAGGAGTGAAGTGAATGCCTTCATGTCTGAAACGATATAACTTTAACGTTAGTTTATGCATATCTCGACCCACATCCATTTATAGCAGTAGTATTTTGCAacgttacatatttaaataacgtTATAAATGCATGTCCAAGAGAGTCATAATCATCTGTCGTGTCAGATCGAGGTGCGGGTCTTTATCAAACTTTTAAGTTgctaatttaaagcttttttttttttttttgctgttaaccTCAAGTTCACACCGATCATAATTCTTTTTCTTTCAGAAAATGAAGTGGACGAGGAAGCAGTAGAGTGTAATAACGTAAGTATTTAGTATTTTGTATTTCATCTGTTtgtgaataatatatatttatatattatgtatgtgtgtgtgtgtgtatactttttCCCCAGGAATTCATTGTGCAGTCTTAAATTTAATCTCCCTTTTTCTATTCAACTGTTCAACTGTTAGGTGATGTGTTAAAGTTATATTTGAAATTTTATGATTGTCATTATTTTGCACTTATATTTGATCCAAGAGGTGATTGCTGCAATTGGTGAGGATGCATCATCTTTTGAGAGTAATGCGAATGTCCTGCGTATCCAGTGAAATAAGGTGTGTGACCCTTTATTAAAAACACCCTTGTCAGTGAGAtcacacattttaaatcagttctcagtttaaatgaaaagtttaatGTCAGTAATAGCCAAAGTGTAGGATCAAAtgactattataaatgttatgactattgtaaaaaaaattaatttttaagcTTTGTGGTGAACATATGTGCATTCAAGCTTACAACTATTTGTACAATGATAACTAAAGGGAAATGGCAACAAAGAATATTAGATAATGTTTTTAGTTAAAGTGAATCActaatttcctttttatttattatagtcatGGTGAACCTGACTGAATGCATTCATCT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008551 True 1326 lncRNA 0.32 1 9601745 9603070

Neighbor

gene id symbol gene type direction distance location
XLOC_003236 CABZ01079837.1 coding upstream 79672 9511533 ~ 9522073 (+)
XLOC_003233 tbl1xr1a coding upstream 919298 8565323 ~ 8682447 (+)
XLOC_003235 NA coding upstream 924025 8675969 ~ 8677720 (+)
XLOC_003234 CR847563.1 coding upstream 1021188 8578054 ~ 8580557 (+)
XLOC_003232 dnase2b coding upstream 1422600 8170948 ~ 8179145 (+)
XLOC_003238 BX005472.1 coding downstream 295443 9898513 ~ 9898630 (+)
XLOC_003239 CT990625.1 coding downstream 932386 10535456 ~ 10537403 (+)
XLOC_003240 b3gnt5a coding downstream 938188 10541258 ~ 10550377 (+)
XLOC_003241 NA coding downstream 1066065 10669135 ~ 10673008 (+)
XLOC_003242 rbms1a coding downstream 1306113 10909183 ~ 10960394 (+)
XLOC_003250 BX324177.11 misc downstream 1742733 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 1769816 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 1783292 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 1814963 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 1826323 11429393 ~ 11429689 (+)
XLOC_003229 NA non-coding upstream 1630715 7880142 ~ 7971030 (+)
XLOC_003228 NA non-coding upstream 1775673 7825353 ~ 7826072 (+)
XLOC_003252 BX324177.5 non-coding downstream 1750389 11353459 ~ 11380887 (+)
XLOC_003253 NA non-coding downstream 1756351 11359421 ~ 11359715 (+)

Expression


Co-expression Network