XLOC_003239 (CT990625.1)


Basic Information

Item Value
gene id XLOC_003239
gene name CT990625.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 10535456 ~ 10537403 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006385
CCACACTGACCTTACAAACTATTATCACCACCCACAACAAACCAGACACACCATTGTTCCTCTTTATCATTATAGGCTTACCTAAAAAAAATGGTTCACTTCCTTATATAGTGTTGTGGGTGTTTCCAGTTTACACTACAGGGAAATATCAGagtactattttaaaaaaaaagaaaaaaaaactagcccAACCAGTTGTCCCAAATGCCATGTCAGGAATGTGGGAACGACTATGGGGGAGGGGCTGGTTTATACTGGAAAAAAGGGTGCTGTCTTTTCTGGAAAATCTAGCTCATGCTGTTAGCTGGGTTTCGGGATACTAGTTGGTTTCTGGCTGGCAGATCATCAGGGGGATGGTGGGATCAGATAGATGAGTTCTGGGTCATCGAGTGCCGCGGCATAGCCCTGCAGAAAGCACACCAAAACAAACACAGCCAAAACCATAAAAACATTCTTGCCTTTACAGCTGATGTATGTTTTGAGATTTACATTGTTTTGAACACTGTTTGATCTGTTTACTAGAAAAGGGTGacaatgatttaattaaaacaacctaaaattgtatataattaataaagcATCTTTAGTAATTGATGTATTAAATGTGAATGAAAGTCAGCATGAAAGCTTGAATCACTATGtacataaataatatgaatgacaCCCTTTAAAATGTGTATCTTCAGCTGTGGTTAACTTACCTACAATAAACTTTATTTACTTGACAAGTACATTTCCTGATCTGTATTTTTAAGCAAATACTACACTTCAAACATTTAGTTTGACTACTCTaatttacttgtttttatat

Function

GO:

id name namespace
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0038191 neuropilin binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000100816

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006385 True 811 lncRNA 0.36 2 10535456 10537403

Neighbor

gene id symbol gene type direction distance location
XLOC_003238 BX005472.1 coding upstream 636826 9898513 ~ 9898630 (+)
XLOC_003237 NA coding upstream 932386 9601745 ~ 9603070 (+)
XLOC_003236 CABZ01079837.1 coding upstream 1013383 9511533 ~ 9522073 (+)
XLOC_003233 tbl1xr1a coding upstream 1853009 8565323 ~ 8682447 (+)
XLOC_003240 b3gnt5a coding downstream 3855 10541258 ~ 10550377 (+)
XLOC_003241 NA coding downstream 131732 10669135 ~ 10673008 (+)
XLOC_003242 rbms1a coding downstream 371780 10909183 ~ 10960394 (+)
XLOC_003243 itgb6 coding downstream 437609 10975012 ~ 11020857 (+)
XLOC_003244 pla2r1 coding downstream 483993 11021396 ~ 11109963 (+)
XLOC_003250 BX324177.11 misc downstream 808400 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 835483 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 848959 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 880630 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 891990 11429393 ~ 11429689 (+)
XLOC_003235 NA non-coding upstream 1857736 8675969 ~ 8677720 (+)
XLOC_003234 CR847563.1 non-coding upstream 1954899 8578054 ~ 8580557 (+)
XLOC_003252 BX324177.5 non-coding downstream 816056 11353459 ~ 11380887 (+)
XLOC_003253 NA non-coding downstream 822018 11359421 ~ 11359715 (+)
XLOC_003268 NA non-coding downstream 966611 11504014 ~ 11513985 (+)
XLOC_003269 CR556712.1 non-coding downstream 1050675 11588078 ~ 11590676 (+)

Expression


Co-expression Network