XLOC_003240 (b3gnt5a)


Basic Information

Item Value
gene id XLOC_003240
gene name b3gnt5a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 10541258 ~ 10550377 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006386
TCTGCTTTCAGTCCTTCCACAACAACTGAAATCCAGGGctttgacaacaacaacaacaaaaaaaaaacacttctacaTTTGAATTACATCATGGATGGGCTACGGTCTCAATGAGCCCAAATGCAGTGTTGACACAACCCAGCAGAGCGTCTTCACTTCAAAAGCAAGTTAAGCCAgacatttgttatttttcttttgcaaaaagagagaaaaaaaatggacACAAAGAGGAAAATGCTTTGGGTAAATGCGTACGGCAGGCCCACACATGTACACTGAGATGACTACGATGGAATTCAGGCAAACAGTTTCCTGGAAAATCATCGTGAGCGGCACATCTGGAGCGCATTATTGGACTTGACAAGAGAGAAGGGTGTTTGAGAGTGCGTGTGGCTTAACAGAATGTTCATGAATTGCAGAAGGGTGAAAAAATGGCAtttcctccagcttctctcgaTGTGCTGTGTCATGTCAGTCCTTATGGTTTGCTGGGAGCACGTGGACCATCACGTAGTGAGCCATGTGAAATCCTACTCCTACCGCTACCTAATCAACAGCTACGACTTCATCAACAAGAGCCTCAGCGTCAGCCCGGAGGAAGCCGCCCGGTTTGGTAGCTTCCCGTATTTGCTTGACCGCAGGGACGTTTGTAAAAACAAAGACGTCCTGCTTTTGCTCTTTGTCAAGTCTTCTCCAGGAAACTTCAAAAGGCGGCAGGCCATACGTTCCACTTGGGGCAACGAGTCCTATATTAGTCAGGAACTCGGTGTTGTCGTCAAGGTAGTGTTTGCTATGGGAGTTCGCCCTGACCGATCGGGACATAAAACAATGCAGAGGGAACTGCGCAAGGAGCACATGGCCCACCATGACCTGATTCAACAGGACTTCCTCGACACATTCCACAACCTCACTGTGAAACTGCTGCTTCAGTTCCGCTGGACGCACGAAAACTGCGCACATGCCCACTTCCTTATGAGTGCAGACGATGATGTCTTCATCCATGTGCCTAACCTAGTGCACTACCTCCAGGAGCTTAAAAGTCAGAACGTACGCAACCTCTGGGTCGGCCACGTTCATAGGGGGGCACCGCCTGTTCGGAAGCGGGACAGCAAGTATTATATGCCATTTGATATGTATCAGTGGTCCTCCTACCCAGATTACACTGCTGGCGCCGGGTATGTCGTTTCTGGCGACGTGGCAGCCAAAATCTACCAGGCCACGCAGTCTCTAAACGCCTCAATGTATATCGATGACGTCTTCATGGGCATCTGTGCCATCGCTGCGGGCGTCTCGCCTCAGGAACATGTTTACTTCTCGGGTGAGGGGAAAACGCCCTATCACCCGTGCATCTACGAAAAGATGATCACCTCTCACGGACACGAAGGCGATATCAGGTACCTGTGGAAGGCTGCGACCGGCCCGCAGGTAGAAGGCATTTCATCTGGATTGTTGGGGAAGTTGTATTGCGCAGCTGTGAAAATGACGCTGCTTTGTAAGCCGTACTTTACGAACACGTATTCATGCATGGCAGCTTTTACATGATGCACTGTGAGATCTATGAAGTCCGAGCAGTATTTgcgttttatttttctttcctcgTTTACTTTTGCTTTAAATGTTAAATAGTCATTTCTTAATATTGATGGAAGCAATGCGACATAAGCATTTGTTTAGCACTGttgcatttctatttatttatttgaatgtacAGCAAATGAATCCTACAGCAAAAGAGCTGCAATGGGATGGAAATATGGTGCGTTCCGAATGTATGTCTTCAACAATACATGGATCTCACAAAACTCCTCAAGTTCACACTTCTGATTCGAACAGTTAAATTAACAGCTAATATTTGACATGTTTCCGTGAAATCTATCTGTGCTCAGCTTTAGCAAACTGTGAGTTTCAGTTCTTGCATATTGTGGAGGCGTAAATTAGATGCTCCAAATTTGAAGTGAGGTGTGGATGCTGTTGAAGAATGTGCTGGAAAAATCtgcaacattttaaatgtcaaaccTCTGCTTGAGCTTTTCAAACAAGTGGGCATTTTAAGGAACTGATACAAACTGGTGCTATAGACCTGTAAAGTAGAATTTGACAATTTATATCTGGAACAGTGAAACTAAACCTATTGAGACATATTTGATTGTGACATTGTGATCCTCATGAcatctgaagatttttttaatgtcaacCCAATGCAAAACAATCTCATTCACTGCACTgtaatatgaaatatttaatataaaaagaaTTGAAGTATATGAGAATTAtcaatgcaaataataaaaatcgCAGCAGGTTGTTGCTGCAAGAGGAGTGAGTTATGTTGATTCAGTATGTTTTGTTCTTTACAAACAAtattgccaaaataaaataaaaaagtacactgcaa
>TCONS_00006387
ttttcttttgcaaaaagagagaaaaaaaatggacACAAAGAGGAAAATGCTTTGGGTAAATGCGTACGGCAGGCCCACACATGTACACTGAGATGACTACGATGGAATTCAGGCAAACAGTTTCCTGGAAAATCATCGTGAGCGGCACATCTGGAGCGCATTATTGGACTTGACAAGAGAGAAGGGTGTTTGAGAGTGCGTGTGGCTTAACAGAATGTTCATGAATTGCAGAAGGGTGAAAAAATGGCAtttcctccagcttctctcgaTGTGCTGTGTCATGTCAGTCCTTATGGTTTGCTGGGAGCACGTGGACCATCACGTAGTGAGCCATGTGAAATCCTACTCCTACCGCTACCTAATCAACAGCTACGACTTCATCAACAAGAGCCTCAGCGTCAGCCCGGAGGAAGCCGCCCGGTTTGGTAGCTTCCCGTATTTGCTTGACCGCAGGGACGTTTGTAAAAACAAAGACGTCCTGCTTTTGCTCTTTGTCAAGTCTTCTCCAGGAAACTTCAAAAGGCGGCAGGCCATACGTTCCACTTGGGGCAACGAGTCCTATATTAGTCAGGAACTCGGTGTTGTCGTCAAGGTAGTGTTTGCTATGGGAGTTCGCCCTGACCGATCGGGACATAAAACAATGCAGAGGGAACTGCGCAAGGAGCACATGGCCCACCATGACCTGATTCAACAGGACTTCCTCGACACATTCCACAACCTCACTGTGAAACTGCTGCTTCAGTTCCGCTGGACGCACGAAAACTGCGCACATGCCCACTTCCTTATGAGTGCAGACGATGATGTCTTCATCCATGTGCCTAACCTAGTGCACTACCTCCAGGAGCTTAAAAGTCAGAACGTACGCAACCTCTGGGTCGGCCACGTTCATAGGGGGGCACCGCCTGTTCGGAAGCGGGACAGCAAGTATTATATGCCATTTGATATGTATCAGTGGTCCTCCTACCCAGATTACACTGCTGGCGCCGGGTATGTCGTTTCTGGCGACGTGGCAGCCAAAATCTACCAGGCCACGCAGTCTCTAAACGCCTCAATGTATATCGATGACGTCTTCATGGGCATCTGTGCCATCGCTGCGGGCGTCTCGCCTCAGGAACATGTTTACTTCTCGGGTGAGGGGAAAACGCCCTATCACCCGTGCATCTACGAAAAGATGATCACCTCTCACGGACACGAAGGCGATATCAGGTACCTGTGGAAGGCTGCGACCGGCCCGCAGGTAGAAGGCATTTCATCTGGATTGTTGGGGAAGTTGTATTGCGCAGCTGTGAAAATGACGCTGCTTTGTAAGCCGTACTTTACGAACACGTATTCATGCATGGCAGCTTTTACATGATGCACTGTGAGATCTATGAAGTCCGAGCAGTATTTgcgttttatttttctttcctcgTTTACTTTTGCTTTAAATGTTAAATAGTCATTTCTTAATATTGATGGAAGCAATGCGACATAAGCATTTGTTTAGCACTGttgcatttctatttatttatttgaatgtacAGCAAATGAATCCTACAGCAAAAGAGCTGCAATGGGATGGAAATATGGTGCGTTCCGAATGTATGTCTTCAACAATACATGGATCTCACAAAACTCCTCAAGTTCACACTTCTGATTCGAACAGTTAAATTAACAGCTAATATTTGACATGTTTCCGTGAAATCTATCTGTGCTCAGCTTTAGCAAACTGTGAGTTTCAGTTCTTGCATATTGTGGAGGCGTAAATTAGATGCTCCAAATTTGAAGTGAGGTGTGGATGCTGTTGAAGAATGTGCTGGAAAAATCtgcaacattttaaatgtcaaaccTCTGCTTGAGCTTTTCAAACAAGTGGGCATTTTAAGGAACTGATACAAACTGGTGCTATAGACCTGTAAAGTAGAATTTGACAATTTATATCTGGAACAGTGAAACTAAACCTATTGAGACATATTTGATTGTGACATTGTGATCCTCATGAcatctgaagatttttttaatgtcaacCCAATGCAAAACAATCTCATTCACTGCACTgtaatatgaaatatttaatataaaaagaaTTGAAGTATATGAGAATTAtcaatgcaaataataaaaatcgCAGCAGGTTGTTGCTGCAAGAGGAGTGAGTTATGTTGATTCAGTATGTTTTGTTCTTTACAAACAAtattgccaaaataaaataaaaaagtacactgc

Function

symbol description
b3gnt5a Predicted to enable beta-galactosyl-N-acetylglucosaminylgalactosylglucosyl-ceramide beta-1,3-acetylglucosaminyltransferase activity. Predicted to be involved in brain development. Predicted to act upstream of or within protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi membrane. Is expressed in solid lens vesicle. Orthologous to human B3GNT5 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5).

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0007420 brain development biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0008457 beta-galactosyl-N-acetylglucosaminylgalactosylglucosyl-ceramide beta-1,3-acetylglucosaminyltransferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0016758 transferase activity, transferring hexosyl groups molecular_function
GO:0047256 lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase activity molecular_function
GO:0008375 acetylglucosaminyltransferase activity molecular_function
GO:0008376 acetylgalactosaminyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8470 Predicted to enable beta-galactosyl-N-acetylglucosaminylgalactosylglucosyl-ceramide beta-1,3-acetylglucosaminyltransferase activity. Predicted to be involved in brain development. Predicted to act upstream of or within protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi membrane. Is expressed in solid lens vesicle. Orthologous to human B3GNT5 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5).

Ensembl:

ensembl_id ENSDARG00000018971

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006386 False 2395 mRNA 0.44 2 10541258 10550377
TCONS_00006387 True 2205 mRNA 0.44 1 10548171 10550375

Neighbor

gene id symbol gene type direction distance location
XLOC_003239 CT990625.1 coding upstream 3855 10535456 ~ 10537403 (+)
XLOC_003238 BX005472.1 coding upstream 642628 9898513 ~ 9898630 (+)
XLOC_003237 NA coding upstream 938188 9601745 ~ 9603070 (+)
XLOC_003236 CABZ01079837.1 coding upstream 1019185 9511533 ~ 9522073 (+)
XLOC_003235 NA coding upstream 1863538 8675969 ~ 8677720 (+)
XLOC_003241 NA coding downstream 118758 10669135 ~ 10673008 (+)
XLOC_003242 rbms1a coding downstream 358806 10909183 ~ 10960394 (+)
XLOC_003243 itgb6 coding downstream 424635 10975012 ~ 11020857 (+)
XLOC_003244 pla2r1 coding downstream 471019 11021396 ~ 11109963 (+)
XLOC_003245 ly75 coding downstream 570155 11120532 ~ 11193205 (+)
XLOC_003250 BX324177.11 misc downstream 795426 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 822509 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 835985 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 867656 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 879016 11429393 ~ 11429689 (+)
XLOC_003252 BX324177.5 non-coding downstream 803082 11353459 ~ 11380887 (+)
XLOC_003253 NA non-coding downstream 809044 11359421 ~ 11359715 (+)
XLOC_003268 NA non-coding downstream 953637 11504014 ~ 11513985 (+)
XLOC_003269 CR556712.1 non-coding downstream 1037701 11588078 ~ 11590676 (+)

Expression


Co-expression Network