XLOC_003248 (ptp4a1)


Basic Information

Item Value
gene id XLOC_003248
gene name ptp4a1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 11267493 ~ 11274919 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006407
CTCCATctattgttaaaaataattttattaaaaatcagaTGATTAGTACTACTTAATCTTAAtactgttaaataataataataattatataaatatcgaaaatatatatttttaaaacaatacaacAGTTCTTTACAAAATGCAGTACGTGTGATCTGTGTGTGGACGGTGAGtcaggcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtagggtGCGGTTTCTTGAGTCCAGCTGTAACCGGTTAACTGTTACCGGAGACTCTCATCACACACACGGCAGCGCTGTATGGTCAAACACCACAACAATTATTCTCCTGGACGGCTTCATGATTAAGCTACAATCTTCAATGAGTAAGCATATTCCACAGTTCTGTGGTGTTTTGGGTCACACATTTATGGAGTTTCTGAAGGGCAGTGGGGATTACTGCCAGGCTCAGCACGGCGTTTATGCAGAGAAGTGAACGGCTAGCCTCGCTACCTCATCAGAAGAGAGACTTGTGTTACAGTTTTAACGTTGGCGGGTTCAGGCTTGGAGAGCAGGCGTCCACATCGGTCGGCGGTCCTGGATGGGattttcaaGCTCTATTGCAAAGTCAAAAATGGCTCGTATGAATAGACCTGCCCCAGTGGAGATCACTTACAAAAACATGAGATTCCTCATTACCCACAATCCCACTAATGCCACGCTTCACAAATTCATCGAGGAACTGAAGAAATATGGGGTGACAACGGTTGTTAGAGTGTGCGAGGCCACGTATGATGCAAACCTGGTTGTCAAGGAGGGCATTCAGGTTCTGGATTGGCCCTTTGATGATGGAGCTCCTCCCTCCAACCAGATTGTTGATGATTGGCTGAATCTTCTTCGGGTTAAGTTCAGGGAGGAGCCAGGATGCTGCATTGCCGTGCATTGTGTGGCAGGCCTTGGAAGAGCCCCAGTGCTGGTTGCCCTGGCCCTGATTGAGTGTGGGATGAAGTATGAGGATGCTGTTCAATTCATTCGACAAAAGCGGCGTGGAGCATTTAACAGCAAGCAGCTTTTCTACCTGGAAAAATATCGTCCCAAAATGCGTCTTCGATTCAAGGATTCCAACGGACATCGCACCAACTGCTGCATTCATGTCCCATTCCCTCCTCTTCATTTCTGTATTTCCTGTGGAGAACCTCTGTCAGCAAGGTGAAGTGCTTGTTTGATGAACATGAGCTTAGTGTTTTGCGAGGAAGTCGGTTGGTGAACATGGTCAAATCCCGCCTCTGCCAAACTCGTA
>TCONS_00006408
gtgtgtgtgtgtgtgttgtagggtGCGGTTTCTTGAGTCCAGCTGTAACCGGTTAACTGTTACCGGAGACTCTCATCACACACACGGCAGCGCTGTATGGTCAAACACCACAACAATTATTCTCCTGGACGGCTTCATGATTAAGCTACAATCTTCAATGAGTAAGCATATTCCACAGTTCTGTGGTGTTTTGGGTCACACATTTATGGAGTTTCTGAAGGGCAGTGGGGATTACTGCCAGGCTCAGCACGGCGTTTATGCAGAGAAGTGAACGGCTAGCCTCGCTACCTCATCAGAAGAGAGACTTGTGTTACAGTTTTAACGTTGGCGGGTTCAGGCTTGGAGAGCAGGCGTCCACATCGGTCGGCGGTCCTGGATGGGGTAAAAAAAATCTCTTGAAGTGCACTGCCCTCGTCGGCCCTTCGTCTTCACTCTCACCAGAGGACCAGcctccttttttcttttcttttgtgatTGATTTTTTTCCACCCTCTTTCCtatttcatttttgttgttttgtcctTAACTTTTAATCCTGCCCACCTCTGGCTCACACCTCATTTCCTAATTACATCCGCCAGAGTTTCTTTAATCTTCTGTTACTGGAGAGAGTTTCTCCcatattttttttcaagattttcaaGCTCTATTGCAAAGTCAAAAATGGCTCGTATGAATAGACCTGCCCCAGTGGAGATCACTTACAAAAACATGAGATTCCTCATTACCCACAATCCCACTAATGCCACGCTTCACAAATTCATCGAGGAACTGAAGAAATATGGGGTGACAACGGTTGTTAGAGTGTGCGAGGCCACGTATGATGCAAACCTGGTTGTCAAGGAGGGCATTCAGGTTCTGGATTGGCCCTTTGATGATGGAGCTCCTCCCTCCAACCAGATTGTTGATGATTGGCTGAATCTTCTTCGGGTTAAGTTCAGGGAGGAGCCAGGATGCTGCATTGCCGTGCATTGTGTGGCAGGCCTTGGAAGAGCCCCAGTGCTGGTTGCCCTGGCCCTGATTGAGTGTGGGATGAAGTATGAGGATGCTGTTCAATTCATTCGACAAAAGCGGCGTGGAGCATTTAACAGCAAGCAGCTTTTCTACCTGGAAAAATATCGTCCCAAAATGCGTCTTCGATTCAAGGATTCCAACGGACATCGCACCAACTGCTGCATTCAGTAAAAGATTGCGCATCAGCTTTTCTCAAATGTTTAATGAGAATTTGTATCTAGCATAAGAAATATGTTCTCTTAATTGGTAAATGTGAAACTAAAATGAAGCTTCTTTCATAGTGTCCCATTCCCTCCTCTTCATTTCTGTATTTCCTGTGGAGAACCTCTGTCAGCAAGGTGAAGTGCTTGTTTGATGAACATGAGCTTAGTGTTTTGCGAGGAAGTCGGTTGGTGAACATGGTCAAATCCCGCCTCTGCCAAACTCGTAGTATGCTTTATTGTCTAAAtggtttaaatatttacatttattgcatttcttttttgttcttgatgatttgtttatttgtacaAAATGCCTGCCTCCAAAAAGATCTAAAATAAATGCCTTATCACAGCAGAAAGACACCGTCTGGTGGAGGAGTTCTCAATGGCATTTGGAGAGGGTTCTTGATGtcttttgcagaaaaaaaaataggaagAGATTCTGAAGAAAAATCAAGGAAAAAGAAATGTCTTTATACAAAAATATCGAAGGTTGGAGTACTAGTTTTCGTTGTTTATCCAAACTTTGTTTACCTATTACTGCCATGTCAATAGTGTGATGTTTGTGTTTTGGCTTAAAACTGGACCTCAATGTCTGCggtatttttatgcctttttattttatgtgcgtaaattaatatttcaatacTTGATTTATGTACGGTATTTGAATATGTGTACTGTTAAATCACCTATTTATATCAATGGATGTGTTTTAGTATAGGGAGAGACAAGTTGCTACAAGTTCGCCAATTTGGAAGTACAATAAAGATACACTGAAAGAA
>TCONS_00006409
ACCGGAGACTCTCATCACACACACGGCAGCGCTGTATGGTCAAACACCACAACAATTATTCTCCTGGACGGCTTCATGATTAAGCTACAATCTTCAATGAGTAAGCATATTCCACAGTTCTGTGGTGTTTTGGGTCACACATTTATGGAGTTTCTGAAGGGCAGTGGGGATTACTGCCAGGCTCAGCACGGCGTTTATGCAGAGAAGTGAACGGCTAGCCTCGCTACCTCATCAGAAGAGAGACTTGTGTTACAGTTTTAACGTTGGCGGGTTCAGGCTTGGAGAGCAGGCGTCCACATCGGTCGGCGGTCCTGGATGGGattttcaaGCTCTATTGCAAAGTCAAAAATGGCTCGTATGAATAGACCTGCCCCAGTGGAGATCACTTACAAAAACATGAGATTCCTCATTACCCACAATCCCACTAATGCCACGCTTCACAAATTCATCGAGGAACTGAAGAAATATGGGGTGACAACGGTTGTTAGAGTGTGCGAGGCCACGTATGATGCAAACCTGGTTGTCAAGGAGGGCATTCAGGTTCTGGATTGGCCCTTTGATGATGGAGCTCCTCCCTCCAACCAGATTGTTGATGATTGGCTGAATCTTCTTCGGGTTAAGTTCAGGGAGGAGCCAGGATGCTGCATTGCCGTGCATTGTGTGGCAGGCCTTGGAAGAGCCCCAGTGCTGGTTGCCCTGGCCCTGATTGAGTGTGGGATGAAGTATGAGGATGCTGTTCAATTCATTCGACAAAAGCGGCGTGGAGCATTTAACAGCAAGCAGCTTTTCTACCTGGAAAAATATCGTCCCAAAATGCGTCTTCGATTCAAGGATTCCAACGGACATCGCACCAACTGCTGCATTCAGTAAAAGATTGCGCATCAGCTTTTCTCAAATGTTTAATGAGAATTTGTATCTAGCATAAGAAATATGTTCTCTTAATTGGTAAATGTGAAACTAAAATGAAGCTTCTTTCATAGTGTCCCATTCCCTCCTCTTCATTTCTGTATTTCCTGTGGAGAACCTCTGTCAGCAAGCAGAAAGACACCGTCTGGTGGAGGAGTTCTCAATGGCATTTGGAGAGGGTTCTTGATGtcttttgcagaaaa
>TCONS_00006410
ACACACACGGCAGCGCTGTATGGTCAAACACCACAACAATTATTCTCCTGGACGGCTTCATGATTAAGCTACAATCTTCAATGAGTAAGCATATTCCACAGTTCTGTGGTGTTTTGGGTCACACATTTATGGAGTTTCTGAAGGGCAGTGGGGATTACTGCCAGGCTCAGCACGGCGTTTATGCAGAGAAGTGAACGGCTAGCCTCGCTACCTCATCAGAAGAGAGACTTGTGTTACAGTTTTAACGTTGGCGGGTTCAGGCTTGGAGAGCAGGCGTCCACATCGGTCGGCGGTCCTGGATGGGGTAAAAAAAATCTCTTGAAGTGCACTGCCCTCGTCGGCCCTTCGTCTTCACTCTCACCAGAGGACCAGcctccttttttcttttcttttgtgatTGATTTTTTTCCACCCTCTTTCCtatttcatttttgttgttttgtcctTAACTTTTAATCCTGCCCACCTCTGGCTCACACCTCATTTCCTAATTACATCCGCCAGAGTTTCTTTAATCTTCTGTTACTGGAGAGAGTTTCTCCcatattttttttcaagattttcaaGCTCTATTGCAAAGTCAAAAATGGCTCGTATGAATAGACCTGCCCCAGTGGAGATCACTTACAAAAACATGAGATTCCTCATTACCCACAATCCCACTAATGCCACGCTTCACAAATTCATCGAGGTGAGTTCCAATAGCTCGAACTTTCTGAAAGTGATGTTTGCATGGACAATTATAAAAAGCTCTTGATTACACCCTTTTCCCAATCGCAAAACTTTGACTGTTATTTGACTTCATatcaaataactgcaaaatatcACACATCACTGTCTTCCATCAGGAACTGAAGAAATATGGGGTGACAACGGTTGTTAGAGTGTGCGAGGCCACGTATGATGCAAACCTGGTTGTCAAGGAGGGCATTCAGGTTCTGG
>TCONS_00006411
ACACACGGCAGCGCTGTATGGTCAAACACCACAACAATTATTCTCCTGGACGGCTTCATGATTAAGCTACAATCTTCAATGAGTAAGCATATTCCATTCTGTGGTGTTTTGGGTCACACATTTATGGAGTTTCTGAAGGGCAGTGGGGATTACTGCCAGGCTCAGCACGGCGTTTATGCAGAGAAGTGAACGGCTAGCCTCGCTACCTCATCAGAAGAGAGACTTGTGTTACAGTTTTAACGTTGGCGGGTTCAGGCTTGGAGAGCAGGCGTCCACATCGGTCGGCGGTCCTGGATGGGGTAAAAAAAATCTCTTGAAGTGCACTGCCCTCGTCGGCCCTTCGTCTTCACTCTCACCAGAGGACCAGcctccttttttcttttcttttgtgatTGATTTTTTTCCACCCTCTTTCCtatttcatttttgttgttttgtcctTAACTTTTAATCCTGCCCACCTCTGGCTCACACCTCATTTCCTAATTACATCCGCCAGAGTTTCTTTAATCTTCTGTTACTGGAGAGAGTTTCTCCcatattttttttcaagattttcaaGCTCTATTGCAAAGTCAAAAATGGCTCGTATGAATAGACCTGCCCCAGTGGAGATCACTTACAAAAACATGAGATTCCTCATTACCCACAATCCCACTAATGCCACGCTTCACAAATTCATCGAGGAACTGAAGAAATATGGGGTGACAACGGTTGTTAGAGTGTGCGAGGCCACGTATGATGCAAACCTGGTTGTCAAGGAGGGCATTCAGGTTCTGGATTGGCCCTTTGATGATGGAGCTCCTCCCTCCAACCAGATT
>TCONS_00006412
ttcaaGCTCTATTGCAAAGTCAAAAATGGCTCGTATGAATAGACCTGCCCCAGTGGAGATCACTTACAAAAACATGAGATTCCTCATTACCCACAATCCCACTAATGCCACGCTTCACAAATTCATCGAGGAACTGAAGAAATATGGGGTGACAACGGTTGTTAGAGTGTGCGAGGCCACGTATGATGCAAACCTGGTTGTCAAGGAGGGCATTCAGGTTCTGGATTGGCCCTTTGATGATGGAGCTCCTCCCTCCAACCAGATTGTTGATGATTGGCTGAATCTTCTTCGGGTTAAGTTCAGGGAGGAGCCAGGATGCTGCATTGCCGTGCATTGTGTGGCAGGCCTTGGAAGAGCCCCAGTGCTGGTTGCCCTGGCCCTGATTGAGTGTGGGATGAAGTATGAGGATGCTGTTCAATTCATTCGACAAAAGCGGCGTGGAGCATTTAACAGCAAGCAGCTTTTCTACCTGGAAAAATATCGTCCCAAAATGCGTCTTCGATTCAAGGATTCCAACGGACATCGCACCAACTGCTGCATTCATGTCCCATTCCCTCCTCTTCATTTCTGTATTTCCTGTGGAGAACCTCTGTCAGCAAGGTGAAGTGCTTGTTTGATGAACATGAGCTTAGTGTTTTGCGAGGAAGTCGGTTGGTGAACATGGTCAAATCCCGCCTCTGCCAAACTCGTACAGAAAGACACCGTCTGGTGGAGGAGTTCTCAATGGCATTTGGAGAGGGTTCTTGATGtcttttgcagaaaaaaaaataggaagAGATTCTGAAGAAAAATCAAGGAAAAAGAAA
>TCONS_00006413
ATGGCTCGTATGAATAGACCTGCCCCAGTGGAGATCACTTACAAAAACATGAGATTCCTCATTACCCACAATCCCACTAATGCCACGCTTCACAAATTCATCGAGGAACTGAAGAAATATGGGGTGACAACGGTTGTTAGAGTGTGCGAGGCCACGTATGATGCAAACCTGGTTGTCAAGGAGGGCATTCAGGTTCTGGATTGGCCCTTTGATGATGGAGCTCCTCCCTCCAACCAGATTGTTGATGATTGGCTGAATCTTCTTCGGGTTAAGTTCAGGGAGGAGCCAGGATGCTGCATTGCCGTGCATTGTGTGGCAGGCCTTGGAAGAGCCCCAGTGCTGGTTGCCCTGGCCCTGATTGAGTGTGGGATGAAGTATGAGGATGCTGTTCAATTCATTCGACAAAAGCGGCGTGGAGCATTTAACAGCAAGCAGCTTTTCTACCTGGAAAAATATCGTCCCAAAATGCGTCTTCGATTCAAGGATTCCAACGGACATCGCACCAACTGCTGCATTCAGTAAAAGATTGCGCATCAGCTTT
>TCONS_00006414
GAGCCAGGATGCTGCATTGCCGTGCATTGTGTGGCAGGCCTTGGAAGAGCCCCAGTGCTGGTTGCCCTGGCCCTGATTGAGTGTGGGATGAAGTATGAGGATGCTGTTCAATTCATTCGACAAAAGCGGCGTGGAGCATTTAACAGCAAGCAGCTTTTCTACCTGGAAAAATATCGTCCCAAAATGCGTCTTCGATTCAAGGATTCCAACGGACATCGCACCAACTGCTGCATTCATGTCCCATTCCCTCCTCTTCATTTCTGTATTTCCTGTGGAGAACCTCTGTCAGCAAGCAGAAAGACACCGTCTGGTGGAGGAGTTCTCAATGGCATTTGGAGAGGGTTCTTGATGtcttttgcagaaaaaaaaataggaagAGATTCTGAAGAAAAATCAAGGAAAAAGAAATGTCTTTATACAAAAATATCGAAGGTTGGAGTACTAGTTTTCGTTGTTTATCCAAACTTTGTTTACCTATTACTGCCATGTCAATAGTGTGATGTTTGTGTTTTGGCTTAAAACTGGACCTCAATGTCTGCggtatttttatgcctttttattttatgtgcgtaaattaatatttcaatacTTGATTTATGTACGGTATTTGAATATGTGTACTGTTAAATCACCTATTTATATCAATGGATGTGTTTTAGTATAGGGAGAGACAAGTTGCTACAAGTTCGCCAATTTGGAAGTACAATAAAGATACACTGAAAGAACA

Function

symbol description
ptp4a1 Predicted to enable protein tyrosine phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm and nucleus. Is expressed in gut; myotome; nervous system; and pharyngeal arch. Orthologous to human PTP4A1 (protein tyrosine phosphatase 4A1).

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0016311 dephosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008138 protein tyrosine/serine/threonine phosphatase activity molecular_function
GO:0016791 phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041121-11 Predicted to enable protein tyrosine phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm and nucleus. Is expressed in gut; myotome; nervous system; and pharyngeal arch. Orthologous to human PTP4A1 (protein tyrosine phosphatase 4A1).

Ensembl:

ensembl_id ENSDARG00000006242

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006407 False 1411 mRNA 0.46 8 11267493 11274358
TCONS_00006408 False 2002 mRNA 0.42 6 11267829 11274917
TCONS_00006409 False 1109 nonsense_mediated_decay 0.47 8 11267890 11274557
TCONS_00006410 False 942 lncRNA 0.44 2 11267906 11272314
TCONS_00006411 False 821 mRNA 0.46 4 11267908 11272447
TCONS_00006412 False 806 nonsense_mediated_decay 0.47 7 11271934 11274600
TCONS_00006413 False 541 mRNA 0.49 5 11271959 11274119
TCONS_00006414 True 727 mRNA 0.40 5 11272490 11274919

Neighbor

gene id symbol gene type direction distance location
XLOC_003247 myom2a coding upstream 5431 11200550 ~ 11262062 (+)
XLOC_003245 ly75 coding upstream 74288 11120532 ~ 11193205 (+)
XLOC_003246 CR847973.1 coding upstream 86416 11175814 ~ 11181077 (+)
XLOC_003244 pla2r1 coding upstream 157530 11021396 ~ 11109963 (+)
XLOC_003243 itgb6 coding upstream 246636 10975012 ~ 11020857 (+)
XLOC_003249 si:dkey-23f9.4 coding downstream 28539 11303458 ~ 11319853 (+)
XLOC_003251 si:dkey-23f9.6 coding downstream 72112 11347031 ~ 11348705 (+)
XLOC_003252 BX324177.5 coding downstream 78540 11353459 ~ 11380887 (+)
XLOC_003253 NA coding downstream 84502 11359421 ~ 11359715 (+)
XLOC_003254 si:dkey-23f9.7 coding downstream 85722 11360641 ~ 11362457 (+)
XLOC_003250 BX324177.11 misc downstream 70884 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 97967 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 111443 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 143114 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 154474 11429393 ~ 11429689 (+)
XLOC_003241 NA non-coding upstream 594485 10669135 ~ 10673008 (+)
XLOC_003239 CT990625.1 non-coding upstream 730090 10535456 ~ 10537403 (+)
XLOC_003238 BX005472.1 non-coding upstream 1368863 9898513 ~ 9898630 (+)
XLOC_003237 NA non-coding upstream 1664423 9601745 ~ 9603070 (+)
XLOC_003236 CABZ01079837.1 non-coding upstream 1745420 9511533 ~ 9522073 (+)
XLOC_003268 NA non-coding downstream 229095 11504014 ~ 11513985 (+)
XLOC_003269 CR556712.1 non-coding downstream 313159 11588078 ~ 11590676 (+)
XLOC_003271 CR848705.1 non-coding downstream 517489 11792408 ~ 11796299 (+)

Expression


Co-expression Network