XLOC_003249 (si:dkey-23f9.4)


Basic Information

Item Value
gene id XLOC_003249
gene name si:dkey-23f9.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 11303458 ~ 11319853 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006415
GCTGTAACTTGCTCTTTGTCCGCGGATTCTTACTctgttatctttttattttgaaatcggAACCGCCGCCGTTGTCCTGGtactgaaaacaacaacaagcaAACCTGGCCATTTAAAGATGGAGAGTGTGGACTTTTCCGAGGAGGAGATCCAGGAGCAGTTGGCTGCGCTTGGATACAGTCATATTTCCAAACAAAGACTGCGCGAATTCAAGCGagATCTAGATCATCTGATCCGTCATGAAAAGTCTAGGAGTCAGAGCTCTAGTGACTGGACTTCTCCAGCATCACAAAGCAGAACCAGCAAAAGTCCACCTGCCCTTATTAAGGAAAAGGTTCAGCTGAACAACATCGGCCCCAGTTTTAACTACGTTCCCTTCAACACCAGCTCAGCAGCTCAACAGAGAGAGATTTTCACCTCCACCTTTAATGAGGAAGATCATGAAGACGCTGCACCCAACAGATTGGAGACTGAGGAAAGACCCTCAGAAATATTTCAATCAGTTTTGGATGATAGTGAGACAACAAGTCCTGATGGAGATCATCATACTCATATGAAGCCTATGATTAAAAGGAAAGTGCTAAGGAAGCATCAAGGTCGGTCTCGTGTCTGTGATGAGTCTACACATAGTGAAGATTCTGGTACAGTCAGTGAACTGGAGGAGCGTTTGGATCAGATGCGGATTCCTACTTCTCGTGTGCATTATGACTCAGAGAGTGAAGAAACAGAAAGCTATACTGACAGAACCAGCTCAGTGACAGAGGAATCCTCAAGTGCTTTCCAACAATACATCAGAGGCATGacacGATCACACAGTGAGAGTGATATCCGACCTCGTCCAAAGTCATTTATTAGGCCAGTTTTTGATCATCCTCACACAAGGAACTTGAAGAAAACTGATCCAGTTGCAAAGTATCTTCAGTATAAGCAGGAGTGGGAGATGTTTAAGCCTCCAGGAGAGAAGAGCAGGAAGGAGCTACATTGGGCCATCAGGGAACAACTTATGTATCAGCCTCCACCACCGAGACCTCAGAAGACATTCATCCCCAACAATTATGTGGTTCCGACAGAGAAGAAGCGATCAGCACTAAGATGGGAGATCAGACATGATTTAGCACACTGCATTATCCCTGCCAAAATCTCCTATCCTTAACAGACTCTTCCACCTACGCCTTATCTTTTATATTgaattaatactattatttattcaaatcatctagctttttttttactttatgaaGCATGTGAAATGAGACGCCCAGATCATTGTTTttatgaaataaacattttaatccaCTGAAGTCCATGCTGTTCATGGCAGGTCGCTGTATGGGAGTTTGAAGGGGTACAGGGGAGTGTAACGCACATCATGCCAGAGAAGCTTCTTTTCAAGGAATTTGACAGCCTCCAGAGTGAGAACCAGACTCTCGTGTTTCAACAAACTGTGGACGTTGAGACctgtaaaaatgaaaaagttGCATATATAGTTTGCGTTCACATTTTCCGGTCAGTGGTTCTCCATTTCAGTCCCTGTGCACTACTATTTTGCAAGTTTCTTTTCACTTCAGATCTTTTCTAATTTGACTAAATGTCCTATGAAGTGAACAGGATCATGTTTCCAGTTTAAAGTGAGAGTCTGCATTTCGTTCAAAATGGCATTTTAGTGTGTAATATGTGAAGTttgatttcccagtgatgggttgcagctggaagggcatctgctgcgtaaaacatatgctacataagttggcggttcattctgctgtggcgacctctgattaataaaggtactgagccgaaaagaaaatgaataaatgaatgtgaaGTTTGATTACAGGGATATTTTCTGTATTAGTCAGTCACGCAACACATGAAcatgaatttcattcattcattttctttagtctctttatttgaACATGAATTTAGTGATGCACTTTATATCAGTCATCATGTTTCCatgattcaagagttcacac
>TCONS_00006416
tttttattttgaaatcggAACCGCCGCCGTTGTCCTGGtactgaaaacaacaacaagcaAACCTGGCCATTTAAAGATGGAGAGTGTGGACTTTTCCGAGGAGGAGATCCAGGAGCAGTTGGCTGCGCTTGGATACAGTCATATTTCCAAACAAAGACTGCGCGAATTCAAGCGagATCTAGATCATCTGATCCGTCATGAAAAGTCTAGGAGTCAGAGCTCTAGTGACTGGACTTCTCCAGCATCACAAAGCAGAACCAGCAAAAGTCCACCTGCCCTTATTAAGGAAAAGGTTCAGCTGAACAACATCGGCCCCAGTTTTAACTACGTTCCCTTCAACACCAGCTCAGCAGCTCAACAGAGAGAGATTTTCACCTCCACCTTTAATGAGGAAGATCATGAAGACGCTGGTATGAATCACTACTATGATTCATATTCACGACACTCAGTTGCTCATAGACCGGCACGGCCGTCCACAGCACCCAACAGATTGGAGACTGAGGAAAGACCCTCAGAAATATTTCAATCAGTTTTGGATGATAGTGAGACAACAAGTCCTGATGGAGATCATCATACTCATATGAAGCCTATGATTAAAAGGAAAGTGCTAAGGAAGCATCAAGGTCGGTCTCGTGTCTGTGATGAGTCTACACATAGTGAAGATTCTGGTACAGTCAGTGAACTGGAGGAGCGTTTGGATCAGATGCGGATTCCTACTTCTCGTGTGCATTATGACTCAGAGAGTGAAGAAACAGAAAGCTATACTGACAGAACCAGCTCAGTGACAGAGGAATCCTCAAGTGCTTTCCAACAATACATCAGAGGCATGacacGATCACACAGTGAGAGTGATATCCGACCTCGTCCAAAGTCATTTATTAGGCCAGTTTTTGATCATCCTCACACAAGGAACTTGAAGAAAACTGATCCAGTTGCAAAGTATCTTCAGTATAAGCAGGAGTGGGAGATGTTTAAGCCTCCAGGAGAGAAGAGCAGGAAGGAGCTACATTGGGCCATCAGGGAACAACTTATGTATCAGCCTCCACCACCGAGACCTCAGAAGACATTCATCCCCAACAATTATGTGGTTCCGACAGAGAAGAAGCGATCAGCACTAAGATGGGAGATCAGACATGATTTAGCACACTGCATTATCCCTGCCAAAATCTCCTATCCTTAACAGACTCTTCCACCTACGCCTTATCTTTTATATTgaattaatactattatttattcaaatcatctagctttttttttactttatgaaGCATGTGAAATGAGACGCCCAGATCATTGTTTttatgaaataaacattttaatccaCTGAA

Function

symbol description
si:dkey-23f9.4 Predicted to be involved in cilium assembly. Predicted to act upstream of or within cell projection organization. Predicted to be located in cell projection; cytoplasm; and cytoskeleton. Predicted to be active in centriole and non-motile cilium. Human ortholog(s) of this gene implicated in hydrolethalus syndrome 1. Orthologous to human HYLS1 (HYLS1 centriolar and ciliogenesis associated).

GO:

id name namespace
GO:0060271 cilium assembly biological_process
GO:0005814 centriole cellular_component
GO:0097730 non-motile cilium cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-141222-88 Predicted to be involved in cilium assembly. Predicted to act upstream of or within cell projection organization. Predicted to be located in cell projection; cytoplasm; and cytoskeleton. Predicted to be active in centriole and non-motile cilium. Human ortholog(s) of this gene implicated in hydrolethalus syndrome 1. Orthologous to human HYLS1 (HYLS1 centriolar and ciliogenesis associated).

Ensembl:

ensembl_id ENSDARG00000098623

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006415 False 1979 mRNA 0.42 13 11303458 11319853
TCONS_00006416 True 1328 mRNA 0.43 12 11303500 11319175

Neighbor

gene id symbol gene type direction distance location
XLOC_003248 ptp4a1 coding upstream 28539 11267493 ~ 11274919 (+)
XLOC_003247 myom2a coding upstream 41396 11200550 ~ 11262062 (+)
XLOC_003245 ly75 coding upstream 110253 11120532 ~ 11193205 (+)
XLOC_003246 CR847973.1 coding upstream 122381 11175814 ~ 11181077 (+)
XLOC_003244 pla2r1 coding upstream 193495 11021396 ~ 11109963 (+)
XLOC_003251 si:dkey-23f9.6 coding downstream 27178 11347031 ~ 11348705 (+)
XLOC_003252 BX324177.5 coding downstream 33606 11353459 ~ 11380887 (+)
XLOC_003253 NA coding downstream 39568 11359421 ~ 11359715 (+)
XLOC_003254 si:dkey-23f9.7 coding downstream 40788 11360641 ~ 11362457 (+)
XLOC_003256 si:dkey-23f9.8 coding downstream 54168 11374021 ~ 11375944 (+)
XLOC_003250 BX324177.11 misc downstream 25950 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 53033 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 66509 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 98180 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 109540 11429393 ~ 11429689 (+)
XLOC_003241 NA non-coding upstream 630450 10669135 ~ 10673008 (+)
XLOC_003239 CT990625.1 non-coding upstream 766055 10535456 ~ 10537403 (+)
XLOC_003238 BX005472.1 non-coding upstream 1404828 9898513 ~ 9898630 (+)
XLOC_003237 NA non-coding upstream 1700388 9601745 ~ 9603070 (+)
XLOC_003236 CABZ01079837.1 non-coding upstream 1781385 9511533 ~ 9522073 (+)
XLOC_003268 NA non-coding downstream 184161 11504014 ~ 11513985 (+)
XLOC_003269 CR556712.1 non-coding downstream 268225 11588078 ~ 11590676 (+)
XLOC_003271 CR848705.1 non-coding downstream 472555 11792408 ~ 11796299 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01038365_00000250_00002681 NA coding CI01038365 null 250 ~ 2895 (-)