XLOC_003254 (si:dkey-23f9.7)


Basic Information

Item Value
gene id XLOC_003254
gene name si:dkey-23f9.7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 11360641 ~ 11362457 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006421
gaacttcGCTCTGTCATTGGCATCTGATCTCGGCGTTCTTCGTGGCAACTTATTCGCAGACTATTGATATTATTGATCGTTGGATACATCGATTGATCGCCTGCTGCTCCCTTCATTCAGGTTTGACCCTTGCTATCACACTGTGGTTTGTATTCAGTATGTCTTGTGTTCATTACAGGTTTCAGAGTCGACTCACCCACGACTCGCTCCAGTTTGAGGGCCTCAACATCACTGTGGGAGAGCTGAAGCGGCAGATCATGAGGCGCGAGAGGCTGAAGTTCTGCCAGCTGAAGATCAGCAAAGCCCAAACTGATGAAGAATACACAGATGATGATGCTCTCATCCCCAAAAACACGTCGGTCATCATCAGACGGGTCCCTGCGGCTGGACTGAAGTCCTCCAACAGAAGATTTGTTGGacatcaagctGGACCATCAGCCAAATCCTCTCAAACAGGTGATTCTTCACTCCTCTCACTGGAGCAGCTGTTGAAGactgagaatctggctgaggcaaaggcatcagaggaggacaagctaaaagcggtgatgtaccagtccagtctgtgctactactccagcagAGCACCAGCTCTGCTTCGCACAAGCGCATCAggaggagcacagggattccCCGCAGCTTCCTGTTGGAGGTGGACGACCCAAACCGAAAGGGAGTCATGATGGACGGCAGCGGCAAATACGTCATCCCCATCATAGACGCTGAGGCCTATGCTGCTGAGAAGAAAAAGAGGCCGTCAGCTGGTGCAGCATCTTCAGTCCAGGACGCCAGAGGGAAACGTTCCCGCTCCCCATCTTCACCAGAGACGCACGGCGACCAGAAGAGACCACGTCACTGAGAGACCTTCACCCAAGATACCTGGAGCCGACGTGAGCac
>TCONS_00006422
ATGTCTTGTGTTCATTACAGGTTTCAGAGTCGACTCACCCACGACTCGCTCCAGTTTGAGGGCCTCAACATCACTGTGGGAGAGCTGAAGCGGCAGATCATGAGGCGCGAGAGGCTGAAGTTCTGCCAGCTGAAGATCAGCAAAGCCCAAACTGATGAAGAATACACAGATGATGATGCTCTCATCCCCAAAAACACGTCGGTCATCATCAGACGGGTCCCTGCGGCTGGACTGAAGTCCTCCAACAGAAGATTTGTTGGacatcaagctGGACCATCAGCCAAATCCTCTCAAACAGGTGATTCTTCACTCCTCTCACTGGAGCAGCTGTTGAAGactgagaatctggctgaggcaaaggcatcagaggaggacaagctaaaagcggtgatgtaccagtccagtctgtgctactactccagcaggtga

Function

symbol description
si:dkey-23f9.7 Predicted to enable ubiquitin protein ligase activity and zinc ion binding activity. Predicted to act upstream of or within mRNA processing and protein ubiquitination. Predicted to be located in nucleus.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000110564

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006421 False 898 mRNA 0.53 6 11360641 11362457
TCONS_00006422 True 429 mRNA 0.51 4 11360799 11361768

Neighbor

gene id symbol gene type direction distance location
XLOC_003253 NA coding upstream 926 11359421 ~ 11359715 (+)
XLOC_003251 si:dkey-23f9.6 coding upstream 11936 11347031 ~ 11348705 (+)
XLOC_003249 si:dkey-23f9.4 coding upstream 40788 11303458 ~ 11319853 (+)
XLOC_003248 ptp4a1 coding upstream 85722 11267493 ~ 11274919 (+)
XLOC_003247 myom2a coding upstream 98579 11200550 ~ 11262062 (+)
XLOC_003256 si:dkey-23f9.8 coding downstream 11564 11374021 ~ 11375944 (+)
XLOC_003258 si:dkey-23f9.9 coding downstream 25052 11387509 ~ 11389462 (+)
XLOC_003259 si:dkey-23f9.12 coding downstream 45435 11407892 ~ 11409744 (+)
XLOC_003261 si:dkey-23f9.13 coding downstream 56729 11419186 ~ 11421106 (+)
XLOC_003263 si:dkey-23f9.11 coding downstream 68095 11430552 ~ 11432479 (+)
XLOC_003250 BX324177.11 misc upstream 14542 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 10429 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 23905 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 55576 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 66936 11429393 ~ 11429689 (+)
XLOC_003264 BX324177.22 misc downstream 79003 11441460 ~ 11441756 (+)
XLOC_003241 NA non-coding upstream 687633 10669135 ~ 10673008 (+)
XLOC_003239 CT990625.1 non-coding upstream 823238 10535456 ~ 10537403 (+)
XLOC_003238 BX005472.1 non-coding upstream 1462011 9898513 ~ 9898630 (+)
XLOC_003237 NA non-coding upstream 1757571 9601745 ~ 9603070 (+)
XLOC_003268 NA non-coding downstream 141557 11504014 ~ 11513985 (+)
XLOC_003269 CR556712.1 non-coding downstream 225621 11588078 ~ 11590676 (+)
XLOC_003271 CR848705.1 non-coding downstream 429951 11792408 ~ 11796299 (+)
XLOC_003273 NA non-coding downstream 446766 11809223 ~ 11823154 (+)
XLOC_003274 NA non-coding downstream 457907 11820364 ~ 11854446 (+)

Expression


Co-expression Network