XLOC_003268


Basic Information

Item Value
gene id XLOC_003268
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 11504014 ~ 11513985 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006441
ACAGTCAAAAGCTTGAGTCGTTTACTTGTCTCCCACTTTGGCGTTTCAGTTTGACCAGGACAAAACCATGTCTTTCACTTCTAACTCCAAAACTCTCAGCGTGTATGGAGGAGCTGGTGGTCGGGGAACCCGAATCTCATCCCCCGCCGGGTTTCTTAATTCTTCTCCAAGAGGCTTTAATCTGGTTGATGGCTTAGACTTATCTGCTGATAAAAAGGCCACCATGCAGAATCTGAATACTCGTCTGGCCTCCTACTTGGAGAAGGTACGCTCACTGGAGAAAGCCAATACTGAGCTAGAGCAGAAGATCAGTGACTGGTATGATAGTcacgatgacgtcacattcgacCACACAAACTTCCAGGACACCATCCAGGATCTGAGGAATGAGTTTAACACACGTTCCCAAGACAATGCCAAACTCATCCTGGAAGTGGATAATGCCAAACTGGCTGCTGATGACTTCAAACGAAAATATGAAAATGAACTGGCCATGCGTCGGGAAATTGAAGCTGATACTGGAAATCTGAGGAAAATCCTGGATGAGTTTAGTTTGAGTCGTTCGGATCTGGAGTTGCAGATTGAGGCTCTGAAAGAGGAATTCATCGTACTGAAGAAAAACCACAAGGAGAATATCACCTTGACTATTGAGACTGGCGGTCAGGTGAATGTCTCTGTGGACGCAGCGCCCTCTATGGATCTGAATCAGGCCATTGATGAGATCCGACAACACTATGAGACTGTGACACAGAAAAACCGTGAAGAGCTGGAGTCCTGGTATGAAAGCAagATGGCACCAATGCAACAGGAGGTGAGCAATCATAATGAAGAGCTTCAGGACAGCAGAACTGAGCTAAAGGACTTAACAAGCACCTTACAAAGACTGCAGATTGAGCTGCAAACCCATCAGAGCATGGTAAACCTGtacacacttacaaacacacaattgattttattgcaaaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagcaatGCAGCATGGTTAAAAGTCTGTGGCAACATGTCTAGGCAGAACGTGCTGTGCCAGGCTGTTTCAACTGTCCGTGAGTTCCAGCCTCACCCCTTTTAGTTCGCCAACCAGAACTTTGCCAGCTTTACAGCAGTCAGGGGAAATGTGCTGTAATTTCCTTTGCTTACTCATTTGGAAGGACAAGAGATAGACTGTTTAAACAGGAGATAGTGTCTACAAAAATATCTGTTTTACACTTGCACCAAATAACATTCAACAATGCTGCGTGTGAATTTTGTCCAGTAAATTACaaatcattcattattattattaatctaaatatatgcatgtatataaatTCACAGAAGTCAAACCTTGATGGGCAACTAGAGGACACAGAGGCCCGCTATGGGAACCAGTTGGCTGGGCTTCAGACCACTGTTTCCAATCTGGAGGACCAGCTTAGCCAATTTCACGCTAACATTGCTAACAACAAAGAAGAGTACGAAACCCTGCTGGACGTAAAGACCAGACTGGAACGTGAGATTGCAGAATACAGGAGACTGCTGGATGGAG
>TCONS_00006442
ACAGTCAAAAGCTTGAGTCGTTTACTTGTCTCCCACTTTGGCGTTTCAGTTTGACCAGGACAAAACCATGTCTTTCACTTCTAACTCCAAAACTCTCAGCGTGTATGGAGGAGCTGGTGGTCGGGGAACCCGAATCTCATCCCCCGCCGGGTTTCTTAATTCTTCTCCAAGAGGCTTTAATCTGGTTGATGGCTTAGACTTATCTGCTGATAAAAAGGCCACCATGCAGAATCTGAATACTCGTCTGGCCTCCTACTTGGAGAAGGTACGCTCACTGGAGAAAGCCAATACTGAGCTAGAGCAGAAGATCAGTGACTGGTATGATAGTcacgatgacgtcacattcgacCACACAAACTTCCAGGACACCATCCAGGATCTGAGGAATGAGTTTAACACACGTTCCCAAGACAATGCCAAACTCATCCTGGAAGTGGATAATGCCAAACTGGCTGCTGATGACTTCAAACGAAAATATGAAAATGAACTGGCCATGCGTCGGGAAATTGAAGCTGATACTGGAAATCTGAGGAAAATCCTGGATGAGTTTAGTTTGAGTCGTTCGGATCTGGAGTTGCAGATTGAGGCTCTGAAAGAGGAATTCATCGTACTGAAGAAAAACCACAAGGAGAATATCACCTTGACTATTGAGACTGGCGGTCAGGTGAATGTCTCTGTGGACGCAGCGCCCTCTATGGATCTGAATCAGGCCATTGATGAGATCCGACAACACTATGAGACTGTGACACAGAAAAACCGTGAAGAGCTGGAGTCCTGGTATGAAAGCAagATGGCACCAATGCAACAGGAGGTGAGCAATCATAATGAAGAGCTTCAGGACAGCAGAACTGAGCTAAAGGACTTAACAAGCACCTTACAAAGACTGCAGATTGAGCTGCAAACCCATCAGAGCATGAAGTCAAACCTTGATGGGCAACTAGAGGACACAGAGGCCCGCTATGGGAACCAGTTGGCTGGGCTTCAGACCACTGTTTCCAATCTGGAGGACCAGCTTAGCCAATTTCACGCTAACATTGCTAACAACAAAGAAGAGTACGAAACCCTGCTGGACGTAAAGACCAGACTGGAACGTGAGATTGCAGAATACAGGAGACTGCTGGATGGAGAAAAGAGGTGATGCTTGAACTTCTCACCAAAACCATCACAGTGATGGAAACCATTGTGGATGGGAGGATTGTGGAGAGCAGCGAGACTGTGGATGTTCTTGAACTTGATGACTAATCTAGACTAATCTTTTCAAAAAAGCAGTTCAAATGAGGACATCATTTGTATTACTAATCCTTTCTGTTCAAACCCAGGGTGCTTCAGCTGTTTCAGAAGACATACCCTTCACTGACACTGAACTGACACTGTcttaattcactataatcttctatgtgaagttgctttgacacaactacattgtaaaactgctatagaaataaagattaattcaattgaattg
>TCONS_00006443
ACAGTCAAAAGCTTGAGTCGTTTACTTGTCTCCCACTTTGGCGTTTCAGTTTGACCAGGACAAAACCATGTCTTTCACTTCTAACTCCAAAACTCTCAGCGTGTATGGAGGAGCTGGTGGTCGGGGAACCCGAATCTCATCCCCCGCCGGGTTTCTTAATTCTTCTCCAAGAGGCTTTAATCTGGTTGATGGCTTAGACTTATCTGCTGATAAAAAGGCCACCATGCAGAATCTGAATACTCGTCTGGCCTCCTACTTGGAGAAGGTACGCTCACTGGAGAAAGCCAATACTGAGCTAGAGCAGAAGATCAGTGACTGGTATGATAGTcacgatgacgtcacattcgacCACACAAACTTCCAGGACACCATCCAGGATCTGAGGAATGAGTTTAACACACGTTCCCAAGACAATGCCAAACTCATCCTGGAAGTGGATAATGCCAAACTGGCTGCTGATGACTTCAAACGAAAATATGAAAATGAACTGGCCATGCGTCGGGAAATTGAAGCTGATACTGGAAATCTGAGGAAAATCCTGGATGAGTTTAGTTTGAGTCGTTCGGATCTGGAGTTGCAGATTGAGGCTCTGAAAGAGGAATTCATCGTACTGAAGAAAAACCACAAGGAGAATATCACCTTGACTATTGAGACTGGCGGTCAGGTGAATGTCTCTGTGGACGCAGCGCCCTCTATGGATCTGAATCAGGCCATTGATGAGATCCGACAACACTATGAGACTGTGACACAGAAAAACCGTGAAGAGCTGGAGTCCTGGTATGAAAGCAagATGGCACCAATGCAACAGGAGGTGAGCAATCATAATGAAGAGCTTCAGGACAGCAGAACTGAGCTAAAGGACTTAACAAGCACCTTACAAAGACTGCAGATTGAGCTGCAAACCCATCAGAGCATGAAGTCAAACCTTGATGGGCAACTAGAGGACACAGAGGCCCGCTATGGGAACCAGTTGGCTGGGCTTCAGACCACTGTTTCCAATCTGGAGGACCAGCTTAGCCAATTTCACGCTAACATTGCTAACAACAAAGAAGAGTACGAAACCCTGCTGGACGTAAAGACCAGACTGGAACGTGAGATTGCAGAATACAGGAGACTGCTGGATGGAGAAAAGAGTGAGAACCACAGTAAGTGAATATCTATAAACTTCTCACCAAAACCATCACAGTGATGGAAACCATTGTGGATGGGAGGATTGTGGAGAGCAGCGAGACTGTGGATGTTCTTGAACTTGATGACTAATCTAGACTAATCTTTTCAAAAAAGCAGTTCAAATGAGGACATCATTTGTATTACTAATCCTTTCTGTTCAAACCCAGGGTGCTTCAGCTGTTTCAGAAGACATACCCTTCACTGACACTGAACTGACACTGTcttaattcactataatcttctatgtgaagttgctttgacacaactacattgtaaaactgctatagaaataaagattaattcaattgaattgaacaaA
>TCONS_00006444
TTTGACCAGGACAAAACCATGTCTTTCACTTCTAACTCCAAAACTCTCAGCGTGTATGGAGGAGCTGGTGGTCGGGGAACCCGAATCTCATCCCCCGCCGGGTTTCTTAATTCTTCTCCAAGAGGCTTTAATCTGGTTGATGGCTTAGACTTATCTGCTGATAAAAAGGCCACCATGCAGAATCTGAATACTCGTCTGGCCTCCTACTTGGAGAAGGTACGCTCACTGGAGAAAGCCAATACTGAGCTAGAGCAGAAGATCAGTGACTGGTATGATAGTcacgatgacgtcacattcgacCACACAAACTTCCAGGACACCATCCAGGATCTGAGGAATGAGTTTAACACACGTTCCCAAGACAATGCCAAACTCATCCTGGAAGTGGATAATGCCAAACTGGCTGCTGATGACTTCAAACGAAAATATGAAAATGAACTGGCCATGCGTCGGGAAATTGAAGCTGATACTGGAAATCTGAGGAAAATCCTGGATGAGTTTAGTTTGAGTCGTTCGGATCTGGAGTTGCAGATTGAGGCTCTGAAAGAGGAATTCATCGTACTGAAGAAAAACCACAAGGAGAATATCACCTTGACTATTGAGACTGGCGGTCAGGTGAATGTCTCTGTGGACGCAGCGCCCTCTATGGATCTGAATCAGGCCATTGATGAGATCCGACAACACTATGAGACTGTGACACAGAAAAACCGTGAAGAGCTGGAGTCCTGGTATGAAAGCAagATGGCACCAATGCAACAGGAGGTGAGCAATCATAATGAAGAGCTTCAGGACAGCAGAACTGAGCTAAAGGACTTAACAAGCACCTTACAAAGACTGCAGATTGAGCTGCAAACCCATCAGAGCATGAAGTCAAACCTTGATGGGCAACTAGAGGACACAGAGGCCCGCTATGGGAACCAGTTGGCTGGGCTTCAGACCACTGTTTCCAATCTGGAGGACCAGCTTAGCCAATTTCACGCTAACATTGCTAACAACAAAGAAGAGTACGAAACCCTGCTGGACGTAAAGACCAGACTGGAACGTGAGATTGCAGAATACAGGAGACTGCTGGATGGAGAAAAGAGTGAGAACCACAAACTTCTCACCAAAACCATCACAGTGATGGAAACCATTGTGGATGGGAGGATTGTGGAGAGCAGCGAGACTGTGGATGTTCTTGAACTTGATGACTAATCTAGACTAATCTTTTCAAAAAAGCAGTTCAAATGAGGACATCATTTGTATTACTAATCCTTTCTGTTCAAACCCAGGGTGCTTCAGCTGTTTCAGAAGACATACCCTTCACTGACACTGAACTGACACTGTcttaattcactataatcttctatgtgaagttgctttgacacaactacattgtaaaactgctatagaaataaagattaattcaattgaattgaacaaA
>TCONS_00006445
GCCTCCTACTTGGAGAAGGTACGCTCACTGGAGAAAGCCAATACTGAGCTAGAGCAGAAGATCAGTGACTGGTATGATAGTcacgatgacgtcacattcgacCACACAAACTTCCAGGACACCATCCAGGATCTGAGGAATGAGTTTAACACACGTTCCCAAGACAATGCCAAACTCATCCTGGAAGTGGATAATGCCAAACTGGCTGCTGATGACTTCAAACGAAAATATGAAAATGAACTGGCCATGCGTCGGGAAATTGAAGCTGATACTGGAAATCTGAGGAAAATCCTGGATGAGTTTAGTTTGAGTCGTTCGGATCTGGAGTTGCAGATTGAGGCTCTGAAAGAGGAATTCATCGTACTGAAGAAAAACCACAAGGAGAATATCACCTTGACTATTGAGACTGGCGGTCAGGTGAATGTCTCTGTGGACGCAGCGCCCTCTATGGATCTGAATCAGGCCATTGATGAGATCCGACAACACTATGAGACTGTGACACAGAAAAACCGTGAAGAGCTGGAGTCCTGGTATGAAAGCAagAAGTCAAACCTTGATGGGCAACTAGAGGACACAGAGGCCCGCTATGGGAACCAGTTGGCTGGGCTTCAGACCACTGTTTCCAATCTGGAGGACCAGCTTAGCCAATTTCACGCTAACATTGCTAACAACAAAGAAGAGTACGAAACCCTGCTGGACGTAAAGACCAGACTGGAACGTGAGATTGCAGAATACAGGAGACTGCTGGATGGAG
>TCONS_00006446
CAAACTTCCAGGACACCATCCAGGATCTGAGGAATGAGAATATCACCTTGACTATTGAGACTGGCGGTCAGGTGAATGTCTCTGTGGACGCAGCGCCCTCTATGGATCTGAATCAGGCCATTGATGAGATCCGACAACACTATGAGACTGTGACACAGAAAAACCGTGAAGAGCTGGAGTCCTGGTATGAAAGCAagATGGCACCAATGCAACAGGAGGTGAGCAATCATAATGAAGAGCTTCAGGACAGCAGAACTGAGCTAAAGGACTTAACAAGCACCTTACAAAGACTGCAGATTGAGCTGCAAACCCATCAGAGCATGGTAAACCTGtacacacttacaaacacacaattgattttattgcaaaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagcaatGCAGCATGGTTAAAAGTCTGTGGCAACATGTCTAGGCAGAACGTGCTGTGCCAGGCTGTTTCAACTGTCCGTGAGTTCCAGCCTCACCCCTTTTAGTTCGCCAACCAGAACTTTGCCAGCTTTACAGCAGTCAGGGGAAATGTGCTGTAATTTCCTTTGCTTACTCATTTGGAAGGACAAGAGATAGACTGTTTAAACAGGAGATAGTGTCTACAAAAATATCTGTTTTACACTTGCACCAAATAACATTCAACAATGCTGCGTGTGAATTTTGTCCAGTAAATTACaaatcattcattattattattaatctaaatatatgcatgtatataaatTCACAGAAGTCAAACCTTGATGGGCAACTAGAGGACACAGAGGCCCGCTATGGGAACCAGTTGGCTGGGCTTCAGACCACTGTTTCCAATCTGGAGGACCAGCTTAGCCAATTTCACGCTAACATTGCTAACAACAAAGAAGAGTACGAAACCCTGCTGGACGTAAAGACCAGACTGGAACGTGAGATTGCAGAATACAGGAGACTGCTGGATGGAG

Function

GO:

id name namespace
GO:0045202 synapse cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-070822-8 Predicted to enable structural molecule activity. Predicted to be located in intermediate filament. Human ortholog(s) of this gene implicated in autosomal recessive woolly hair 3. Orthologous to several human genes including KRT20 (keratin 20); KRT31 (keratin 31); and KRT33B (keratin 33B).

Ensembl:

ensembl_id ENSDARG00000044973

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006441 False 1565 lncRNA 0.44 5 11504014 11513412
TCONS_00006442 False 1465 mRNA 0.45 7 11504014 11513979
TCONS_00006443 False 1489 mRNA 0.44 8 11504014 11513985
TCONS_00006444 False 1423 mRNA 0.45 8 11504063 11513985
TCONS_00006445 False 754 processed_transcript 0.47 5 11504261 11513412
TCONS_00006446 True 972 lncRNA 0.43 3 11504367 11513412

Neighbor

gene id symbol gene type direction distance location
XLOC_003263 si:dkey-23f9.11 coding upstream 71535 11430552 ~ 11432479 (+)
XLOC_003261 si:dkey-23f9.13 coding upstream 82908 11419186 ~ 11421106 (+)
XLOC_003259 si:dkey-23f9.12 coding upstream 94270 11407892 ~ 11409744 (+)
XLOC_003258 si:dkey-23f9.9 coding upstream 114552 11387509 ~ 11389462 (+)
XLOC_003256 si:dkey-23f9.8 coding upstream 128070 11374021 ~ 11375944 (+)
XLOC_003269 CR556712.1 coding downstream 74093 11588078 ~ 11590676 (+)
XLOC_003270 jupa coding downstream 205590 11719575 ~ 11781911 (+)
XLOC_003271 CR848705.1 coding downstream 278423 11792408 ~ 11796299 (+)
XLOC_003272 pimr93 coding downstream 283041 11797026 ~ 11804720 (+)
XLOC_003273 NA coding downstream 295238 11809223 ~ 11823154 (+)
XLOC_003267 BX324177.19 misc upstream 41412 11462306 ~ 11462602 (+)
XLOC_003266 BX324177.20 misc upstream 42912 11460806 ~ 11461102 (+)
XLOC_003265 BX324177.12 misc upstream 53572 11450155 ~ 11450442 (+)
XLOC_003264 BX324177.22 misc upstream 62258 11441460 ~ 11441756 (+)
XLOC_003262 BX324177.15 misc upstream 74325 11429393 ~ 11429689 (+)
XLOC_003281 BX469912.12 misc downstream 648767 12162752 ~ 12163048 (+)
XLOC_003283 BX469912.14 misc downstream 657310 12171295 ~ 12171591 (+)
XLOC_003285 BX469912.9 misc downstream 673321 12187306 ~ 12187602 (+)
XLOC_003286 BX469912.6 misc downstream 675740 12189725 ~ 12190024 (+)
XLOC_003287 BX469912.15 misc downstream 694924 12208909 ~ 12209205 (+)
XLOC_003252 BX324177.5 non-coding upstream 123127 11353459 ~ 11380887 (+)
XLOC_003253 NA non-coding upstream 144299 11359421 ~ 11359715 (+)
XLOC_003241 NA non-coding upstream 831006 10669135 ~ 10673008 (+)
XLOC_003239 CT990625.1 non-coding upstream 966611 10535456 ~ 10537403 (+)
XLOC_003238 BX005472.1 non-coding upstream 1605384 9898513 ~ 9898630 (+)
XLOC_003274 NA non-coding downstream 306379 11820364 ~ 11854446 (+)
XLOC_003275 NA non-coding downstream 319359 11833344 ~ 11871147 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G82096 NA non-coding NC_056709.1 CM032078.1 15424417 ~ 15429408 (+)