XLOC_003272 (pimr93)


Basic Information

Item Value
gene id XLOC_003272
gene name pimr93
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 11797026 ~ 11804720 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006453
TGAAAACAAGCGCAGCCCGGTTTACCTCAGCTCCGATGACGCAAGAAATAGAATGTCTGGAACACATGCAGTACATGACGTAGTGCTTCTCTAGCTCTGAATTTTCTACACGCGCATCATTATTTGTTCAGTTGTAGAGCTGTAAAACATGTCTATGGAGCGAAAACGGAGTTCTCACAGCTATCAGGTGTATGGTTTCCGTACACCCCCAATACCCGGCACGAACGAGGCTGCGTTTCATCCCGTTTGTGTCGGTGAGGGATATGAGAAGAGTAGGAGAGAGGACGAGTGTTTGGATAGGAGGCCAAGCAGGAAACGAAAGATGGAGGAGATTTCTGCTGAAGAGCCTCCAAGAAAGAGAATGAAAGAGTTTTTTAAGGGATGTGAGAGAAAGAGGAAAATAGAGGACGGTCTTGATGAGGGAccagagagaaaaagaagaaaatatgaGTATTTAGATAGGAGGCCAAACAGGAAAAGAAAGATGGAGGAGATTTCTGCTGAAGAGCCTCCAAGAAAGAGAATGAAAGAGTTTTTTAAGGGGTGTGAGAGAAAGAGGAAAATAGAGGACGGTCTTGATGAGGGAccagagagaaaaagaagaaaatatgaGTATTTAGATAGGAGGCCAAACAGGAAACGAAAGATGGAGGAGATTTCTGCTGAAGAGCCTCCAAGAAAGAGAATGAAACAGCTTTTTAAGGGTTCTGAGAGAAAAATGAATGGGGAAGACAGTTTGTCTTTTTCTAGTTTGCCTATTAGGAGGCTAAGCAGAAAAAGAAAGTGGGAAGAGAGTTCTGCTGAAGAGCCTCCGACAAAGATAAGCAGGACAGAGTATTTTATTAAGGGGTTTAAGAGAAAAAGGAAAATGGAGGATATATTTGAAGAGGGACCCGAGAGAAAAAGgagaaaatatgaatatttagagTGTTTAAATAGGAGGCAACCCAGAAAAAGAAAGAGGGGTGAGATTTTTGGTGAAGAGCCTCTCAGAAAAAGGAAAGAGGATCACTATTTTGATGGGGGgttaaaaagtaaaagaaaaagggAAGAGATTTATTTTGAAGAGTCTTCTAGAAAGATAGAGGATGTTGATATGGGGTCAGAGACAAAGAGGAAAAGGGAGGAGGGTTTTGATGAGGGACCAGAAAGAAAAAGGAGAATGTATTTTGATTGGAGGCCGAACAGAACAAGAAAGAGAGAGGAGAGTTTTGTTGAAGAGCCTTTAAGAAAAAGGAGAAAATCAGAGTATTTTGATAGGAGGCCGAACAGAAAAAGGAAGCCGGAAGACAGTTCTGTTGTAGTGTCTCTGAGGAAAAGGAGAAAGGATGAGTATTTTGATAGTGGGCCGAACagtaaaagaaagaaggaagaaagtTCTGCTGAACATCCGGAAATGTGGAGAATGTTGGAGAGCTTTAAAAAGCTGACCACTTTTTACTCCAGTCCAACAATTGAATTAATGGATGTCCAGAGTTCTTCCAGCCATTCTGATTCGGTTCAAGCACACCACAGTCCAACCAGTGATATTCTGAGGCGGTATGAAGTCAGAAGAATTCTCTGTAGGAGAGGATCTGACACCATCTACGAGGGCAGGCGTATGACCGATAACCTCAAGGTGGCAGTGAAAGTTGTAAGAAAGTTTTGGGAGGTGACATGCATAGTGccTGGTCATCCTGTAGCCCTTCCATTAGAAGTCGGTCTATTAGCCCTTGTTAATAAGAGCCTCAGAGGTCCAAAGACCATTCAGCTGCTGGACTGGCAGGATCTGCCTGATTATTACACCATTATCTTGGAGTGTCCATCACCACGGGTTTGCCGTGAAGCCAACTTGAGTCAACAGAGCAACGGAACAATATCAACAATTGCAGGAAAGTCCAACAGCTCTGGGCTGTATGATACCGATCAAAGTGCAACATCAGTATCCAGTTCCAGTACAGATGATGAGCCAGCGAGAAACATGAGGATGACAGCCAATATAGATTTTGTACTTCTCTGGACCCAGAACAGAGAAGACAAACTGCTACAACCGATTAGCGTTGAGATGGTGTCCGCTCAGTCGGTAAAGCAGCCTGCTGTGCCAGTACATCTAAGACCCGCTGGACCTGCTGGAAATGGACAAAACATTTTGAATGGGTTTGAATTAATAAGAATGGTTGTCCATGGAACATTTGGCACCGTCTATGAAGGGAAACGCAGACGAGATGGCCTTAAGGTGGCAGTAAAATTCACCAGAAAACGCAGGAGCATGCAGTACATCAACATTCCTGGACATTTTGCACCCGTTCCATTAGAGGTGGCCAGGTTACTCATGACTAAAAAGGACCCAACAGTTCCACAGAAGTTTAAGCTGCTGGACTGGCAGGACAAGCCCGATTACTACATTATGGTCCTGAAGCGTGCCTCATCGTGGAAAGATGCAAAATCAACAACTGCACCGCAAGAAAAGAACCTGCTACAACCGATTACTGTTGAGATGGTGTCTGCCTTGTCATCGATGAAACAGTGTACTCTGCCAATATATCAGGGCCCTGCTAGAAATGGACAGAAAAGGTTGAGGGGGTTTGTATTAAAGAGAATGATTGGCCAGGGAGGATTTGGAAGAGTCTATAAAGGGACCCGCATACACGATGGCAGAAAGGTGGCAGTAAAGTTCATCAAGAAGTGGGCGACCATGCAGTACATCAatattCCGAGACATTTTGCACCTGTTCCATTAGAGGTTGCCCTGATGCTCATGGTTAATAAGAGCCCCAGGGTTCCAGAGATCATTCGGCTCCTGGACTGGGAGGACTATCCTGACCACTACATCTTGGTTTTGGAACTTTCCACACCCTGTGAAGATCTGAGCGTCTATGTTAAACGCTCTGGAGGATTCCTCAATGAAACCAAAGCACGGGTTATCATGGGGCAGACGATACGGGCCGCTCAAGTGTGCTGTGCTCGCGGAGTCTTTCACCGTGACATAAAGCTGGAGAACCTGCTGATCAACCCACAAACACTCCGGGTCAAACTGATTGACTTTGGGTGCGGGGACCTCCTGAAGGATTCTGCGTATCATCACTACAGTGGGACGAGACAGTATTCCCCTCCTGAGTTTAACATGATGAGACGGTACCATGGGAAACCTGCCACTGTGTGGTCATTGGGAATCCTGTTATATGTACTGCTGTGTGGACGCCTTCCACGATCCAGGATTTTGCTGCGGATGAATTCAAGCTGTTGGTCCAGTTCTCGCTTGTCACATGACTGTTGTGATCTGATGTGCTGCCTCCTGCAACAAGATCCATCTAAGCGGATCAGTTTAGAAGACATCCTGCATCATCCATGGtttaagGTCACCAAATGTAGCAGCTTGCCAAAGAGAAATGCTGCACAGCAGAGGAAGATCAGGCCACTACATGAGAACGAGAGGGAAACACCGAAGGGAATCAAAGTAGGAT

Function

symbol description
pimr93 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm.

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0006468 protein phosphorylation biological_process
GO:0007346 regulation of mitotic cell cycle biological_process
GO:0046777 protein autophosphorylation biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141216-82 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm.

Ensembl:

ensembl_id ENSDARG00000056838

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006453 True 3443 mRNA 0.45 12 11797026 11804720

Neighbor

gene id symbol gene type direction distance location
XLOC_003271 CR848705.1 coding upstream 727 11792408 ~ 11796299 (+)
XLOC_003270 jupa coding upstream 15115 11719575 ~ 11781911 (+)
XLOC_003269 CR556712.1 coding upstream 206350 11588078 ~ 11590676 (+)
XLOC_003268 NA coding upstream 283041 11504014 ~ 11513985 (+)
XLOC_003263 si:dkey-23f9.11 coding upstream 364547 11430552 ~ 11432479 (+)
XLOC_003273 NA coding downstream 4503 11809223 ~ 11823154 (+)
XLOC_003274 NA coding downstream 15644 11820364 ~ 11854446 (+)
XLOC_003275 NA coding downstream 28624 11833344 ~ 11871147 (+)
XLOC_003276 NA coding downstream 35107 11839827 ~ 11876130 (+)
XLOC_003277 pimr94 coding downstream 38004 11842724 ~ 11849995 (+)
XLOC_003267 BX324177.19 misc upstream 334424 11462306 ~ 11462602 (+)
XLOC_003266 BX324177.20 misc upstream 335924 11460806 ~ 11461102 (+)
XLOC_003265 BX324177.12 misc upstream 346584 11450155 ~ 11450442 (+)
XLOC_003264 BX324177.22 misc upstream 355270 11441460 ~ 11441756 (+)
XLOC_003262 BX324177.15 misc upstream 367337 11429393 ~ 11429689 (+)
XLOC_003281 BX469912.12 misc downstream 358032 12162752 ~ 12163048 (+)
XLOC_003283 BX469912.14 misc downstream 366575 12171295 ~ 12171591 (+)
XLOC_003285 BX469912.9 misc downstream 382586 12187306 ~ 12187602 (+)
XLOC_003286 BX469912.6 misc downstream 385005 12189725 ~ 12190024 (+)
XLOC_003287 BX469912.15 misc downstream 404189 12208909 ~ 12209205 (+)
XLOC_003252 BX324177.5 non-coding upstream 416139 11353459 ~ 11380887 (+)
XLOC_003253 NA non-coding upstream 437311 11359421 ~ 11359715 (+)
XLOC_003278 NA non-coding downstream 86520 11891240 ~ 11903510 (+)

Expression


Co-expression Network