XLOC_003275


Basic Information

Item Value
gene id XLOC_003275
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 11833344 ~ 11871147 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008555
CAGCAAAGGATCTTGAGGCGGAAGACGTGTGTCCATTGCGGAGAGGTGGAGGTGGAGGAGGCGCATGTGCTGAAGACTGACGTCCAGAAGAGGACAGAGGAGGAGCCTTCGAACGACTCGGGGGCTCAGAGGAGGTCTGTGGGCCACCGCGGTAAGGAGGCGGAGGAGGTGGTGTTTCCCGAATACCATTACGAGATATAGGAGGAGGAACCTGAGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008555 True 217 lncRNA 0.59 2 11833344 11871147

Neighbor

gene id symbol gene type direction distance location
XLOC_003273 NA coding upstream 10190 11809223 ~ 11823154 (+)
XLOC_003272 pimr93 coding upstream 28624 11797026 ~ 11804720 (+)
XLOC_003271 CR848705.1 coding upstream 37045 11792408 ~ 11796299 (+)
XLOC_003270 jupa coding upstream 51433 11719575 ~ 11781911 (+)
XLOC_003269 CR556712.1 coding upstream 242668 11588078 ~ 11590676 (+)
XLOC_003278 NA coding downstream 20093 11891240 ~ 11903510 (+)
XLOC_003279 zgc:64002 coding downstream 103561 11974708 ~ 11979854 (+)
XLOC_003280 si:ch211-156l18.8 coding downstream 181644 12052791 ~ 12092178 (+)
XLOC_003282 NA coding downstream 295339 12166486 ~ 12166790 (+)
XLOC_003284 si:ch211-156l18.7 coding downstream 304015 12175162 ~ 12184543 (+)
XLOC_003267 BX324177.19 misc upstream 370742 11462306 ~ 11462602 (+)
XLOC_003266 BX324177.20 misc upstream 372242 11460806 ~ 11461102 (+)
XLOC_003265 BX324177.12 misc upstream 382902 11450155 ~ 11450442 (+)
XLOC_003264 BX324177.22 misc upstream 391588 11441460 ~ 11441756 (+)
XLOC_003262 BX324177.15 misc upstream 403655 11429393 ~ 11429689 (+)
XLOC_003281 BX469912.12 misc downstream 291605 12162752 ~ 12163048 (+)
XLOC_003283 BX469912.14 misc downstream 300148 12171295 ~ 12171591 (+)
XLOC_003285 BX469912.9 misc downstream 316159 12187306 ~ 12187602 (+)
XLOC_003286 BX469912.6 misc downstream 318578 12189725 ~ 12190024 (+)
XLOC_003287 BX469912.15 misc downstream 337762 12208909 ~ 12209205 (+)
XLOC_003268 NA non-coding upstream 319359 11504014 ~ 11513985 (+)
XLOC_003252 BX324177.5 non-coding upstream 452457 11353459 ~ 11380887 (+)
XLOC_003302 NA non-coding downstream 595619 12466766 ~ 12467060 (+)
XLOC_003304 NA non-coding downstream 622725 12493872 ~ 12494177 (+)
XLOC_003307 NA non-coding downstream 651623 12522770 ~ 12523029 (+)

Expression


Co-expression Network