XLOC_032917 (lrrc7)


Basic Information

Item Value
gene id XLOC_032917
gene name lrrc7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 30124197 ~ 30210378 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00063950
ATGACGACTAAGAGGAAGATCATCGGCCGCCTGGTGCCCTGTCGATGTTTCCGGGGGGAGGAGGAGGTCATCTCAGTTCTGGATTATTCCCACTGTAGCCTGCAGCAGGTCCCCAAGGAGATCTTCAGCTTCGAGCGCACGCTGGAGGAGCTTTACCTGGACGCCAACCAGATTGAGGAGCTGCCTAAGcaaCTCTTCAACTGTCAAGCGCTCAAGAAGCTGAGCATGCCTGACAATGACCTCTCCAACCTGCCAACCACCATTGCCAGCCTTGTGAATCTGAAAGAGTTAGATATTAGTAAAAATGGTATTCAAGAGTTTCCAGACAACATCAAATGCTGTAAATGTCTATCAGTTGTGGAGGCCAGTGTAAATCCTATAGCCAAGCTCCCGGAAGGCTTCACCCAGCTTCTAAACCTGACACAGCTCTTCTTAAATGATGCCTTCCTTGAATACCTGCCTGCCAATTTTGGGAGATTGTCAAAATTACGGATCTTGGAACTTCGTGAGAATCACCTGAAAACTATGCCAAAGTCAATTCATAGGCTGTCGCAACTGGAGCGGTTAGACTTGGGAAGCAATGAATTCTCTGAACTGCCAGAAGTGCTGGAGCAGATCCATAGTCTAAAAGAGCTGTGGCTGGACAACAATTCATTACAAACTATACCAGGGtcTATTGGGAAACTGAGGCAGCTGCGGTATCTAGACTTGGCGAAGAACAGGATTGAGAGTCTAGATGCAGATATCTCTGGCTGCGAGTCCTTAGAGGACCTTCTCCTCTCCGCCAACATGCTGCAACAGTTACCTGATTCAATAGGAAAGTTGAAAAAGTTGACAACATTAAAAGTTGATGACAACCAGCTCACCTCACTGCCTAACACCATTGGAAGTTTATCACTTTTAGAGGAGTTTGACTGTAGCTGCAATGAACTGGAATCTCTGCCTCCCACCATTGGCTACTTGCACAGTCTTCGGACATTTGCAGCCGATGAGAACTTCTTGTCTGATCTGCCCAGAGAGATTGGAAACTGCAGGAATGTCACGGTCATGTCCTTGCGCTCCAATAAACTGGAGTTTCTGCCTGATGAAATTGGACAGATGACAAAGCTACGTGTTCTCAATCTAAGTGACAATAGGTTAAAGAATCTTCCCTTCACTTTCACTAAATTGAAAGATCTTGCTGCACTCTGGTTATCTGACAATCAGTCCAAGGCCCTTATCCCCCTTCAAACAGAGGCTCATCCTGAGACCAAACAGAGAGTCTTGACCAACTACATGTTCCCTCAGCAGCCCAGGCATGATGAGGATTACCAGTCTGACACTGACAGCTTTAATCCCACTCTCTGGGAGGAGCAGAGACAACAAAGGATGACGGTGGCGTTTGAGTTCGAGGACAAGAAGGAGGAAGAGGACAACTCAGGAAAAGTGAAGGTTGAGATTAATTTAAAGCGTTATCCCACCCCGTACCCAGAAGACCTCAAGAACATGGTAAAGTCAGTGCAGAACCTGGTGGGTAAAACCACTCACCCCCTAAACACTGAGAAATGCTCTTCTGGGACCAATATGGAGCTCCACAGCCAAGACAAGTATGAGCCCAAGTGGCCCATTGCTCCAAAGGAGGACTCCATGGGAGGCTCCCCAAATGATATCCGAATCTCTGACATGAGACCAACTTTGGTAGAGCCACCAATGTACAAACCAAAAGTTGTGTTACTGGGCAAGGAAAAGAAAGagTCAACAGATGAGTCTGAACCAGACAAAATGCATTGTTTGAACAACAGCGGATCATCTGCCACTTATTCAGACTACTCACCCTCCCAGGGATCATCTGGCTCCTCCAACCCACCTGGAAATGTCGGCAATCTGCAAACATCTGGGAAAGAGGGGTCATCACAGACTCACTGGACCAACAGGCTGGCTCAGTCTTTCCCAAAGCCCATTGAAACCAAGCCTCTTCTAAGCCAGAGGGAAACACCTCCTTCCAGCACGCTGCAGCAGCGAGGTGAGAGGCGGCCACTCAGCGACACCTTCGACAGCTGGAACGATGCCCCCCACTATGATAACACAGGTTTTGTTGCCGAGGAGATGCCTCTTGACACTCCGAGCAGCAGTGCTGGAAACCCCATGCTAGGCTCAAAGCCCCGGAGTGCATCGACAGCACATGGGCGACGGCCTCTCATGAGACAAGACCGCATCGTTGGAGTTCCCCTAGAGCTCGATCAGACACAACAAACTTTCCACACAGTTCGCAACACCCCTGACACTGAAGTGCCTGCTCCTTCAAACCCCTGGCAAAACTGGACAAGGACTCCCAGTCCTTTTGAGGACAGGACAGCTTTCCCTTCCAAGTTGGAAATTACCCCAGCCAACAGCCCTAATCCTGACCGTAAGGACTTTGAGCAGGAGATGGGAGAAATACCCGGCACTTTCCCCTCAACTGGAGCCTGGGGGTTTCTGGACTCTACAGACTCAGGGACGGGACGAGGTCATCCCAACGTTTATACGCACATCCAGGTTGGGAAAGAACCAAATAAGGGAAACACTATGGTTCTTAGCAAAAGTTCTGAAAGACTTTCACCAATGATGAAGGAGGTAAAAGCAAAATTTAAGAAATCCCAGAGCATAGATGAAATCGATACCGGGTCATACAAGGTCTATAGCATCCCTATGGACAGCTACAGTTCTAGCATAGAAAATCAGGGAAGTGTTGATCGAGCAGACTTTCCTATACCTCTAGAACAGAGCATGTCCAGGAGCCAGTCAGCTCCAATGCTGGATGATGATCTGGATGGCTACGGTTTGAATAAAAGCTCTCAGCAGCAGAAGCCCGCCATCCCAAAGAAAGTTTACCATTTTGACCAAAGCTTCAACCCACAAGGAGCCATGGATGTTTTGAAAGCAGAGAGGAGGGTTCCTCCACCATTCCCCAACACCCCTGAATATGTGAACCAGCCTGGGAAGACTTTGCCAAAGGAACTAGTCAGTCCAAGGGGCTATCGAGGTTATCCGCAGATGGAACAAGTCTTTTCATTTGCTCCGAATGCCACTGATGATTCTCACAATCAACAACTCTCTGTCCAGCCCCAACGCTCCAGGCCGGGTTTCCTGAGGCGAGCGGACTCTTTAGTAAGTTCGACGGAGATGGCGCTGTTCCGCAGAGTGGCTGAGAACCATGAACTCCAGCTGGCAGAGCACTACAGCAGACCTCAACAAATAAAGAGCATGCTGGAGCAACAGAACAGCTTGTCTACCATGGCTGACACTCAGTTCCACAAGAGGAATGGTAGGTATGATGAAGATTACTCATCTTATCAAGAACCCAAAAAGCCCATCATGGGTTATCCCACCAAGAGTCTGACACAACGTCGCCCCCTGTCTGCACGGAGCTACAGCACAGAGACATACGGGGCATCTCAGGCAAGGCCAGTGTCTGCCCGGCCCACAATGGCTGCTCTTCTAGAGAAATTGCCTTCAGATTACAATCTTAGTACATGCACTGAGAAAAGCCCTGAAGCCGACATGAACCTGAGACCTGTCCCTCAGAAACAAGAGGACCTGACCTCCAAAATGCCAGTAGACTGGAGACAGCAGCTGCTTAGACACATAGAAGCGAAGAGACTAGACCGGAGCGCTGTCCTTAAGCACAACACAGTAAACTTCGGCATGCTGTACTCTGGAGGCTATGCTGCACCGCATGCCAGCAGAAGCATGACAATAAACTTTTACAATAACACAAAGCATGAAAACCAAACAACTCAGTGGCTACCTCTACCAAATACACCTTCACAACAGAGCAATATTTTAGATAATGGACAAGAGGTCATGTCCCCGAGTAGCCAGTGGGCGCCGTATTCACTGGGACGAAGAGATGTGCCACCAGAGAACATGAATATCATCAAAAAGCCTGGAGTTCACAATCCCCATCAACAACAGACGATGATGATCACTTCAGCCCCCCCACCCCACCGGACGGCCCGCGACCAGCAGTATGAGGGTGCCATCAACAAGGTGTCCATCCAGCAGTACCAGTCCCCGCTGCCCATgcccatcaccaccaccagcccCCGGCCCCAGAGTGCCCGCTGCTTCATTCAGACTAAAGGCCAGAAGAGCATGGATGGCTTTCCAGAACAGCTCTGTGTGAGAATCGAGAAGAACCCTGGCCTTGGTTTCAGCATCTCAGGGGGAATCAGTGGACAAGGGAACCCCTTCAAGCCCTCGGACATGGGTATCTTTGTTACTAGGGTACAGCCTGATGGACCAGCCTCCAACGTTCTTCGACCAGGGGACAAAATTCTGAAGGCCAACGGACATAGTTTCTTACACATGGAGCATGAAACCGCAGTGTCTCTTCTGAAGAATTTCCCGAAAACTGTGGACTTGGTAATCTTAAGGGAGagcacaatataaatatttttatagctTATAAAGACTTCTCACCCCGACGGAACACAGGAACTTGTACATCATCTTTTTATCTAGGAAGAATTTTGCCAATTGCTGGACCAATGGCAAATTCCAGTGCCAAATGTACACTAGAGGACATATCTAATAACGTTATATACGGCTTACACATTCTGCACCGACATACATTGGTTGAAATCTTTGGTTGATGTTGTTGATATTCTTTATCTCAGCCTGTGGCTGTGAGTgggtgcatttttttttcttctttttcctgcTTATTTATATGGCGTATTATTTTGTACCTATTTTTCCTAGCAGCTTTTCGGTTTGAGCATGAAAGCACATCTGCTTTTAAGGACATTTACCCACCATAACACTGCCTCAACTTTGTAAATGCCTtgtgtaaatatatacatttacaacTCAAATGTGATTAGAGCATAGAATGTGAATGAAAGACACACTGATGACTTTTCTAACACATCCACCAgtttttataacaaatttaaCAAGGGTTACGATTTAGGGAaaacgacaa
>TCONS_00063951
ATGACGACTAAGAGGAAGATCATCGGCCGCCTGGTGCCCTGTCGATGTTTCCGGGGGGAGGAGGAGGTCATCTCAGTTCTGGATTATTCCCACTGTAGCCTGCAGCAGGTCCCCAAGGAGATCTTCAGCTTCGAGCGCACGCTGGAGGAGCTTTACCTGGACGCCAACCAGATTGAGGAGCTGCCTAAGcaaCTCTTCAACTGTCAAGCGCTCAAGAAGCTGAGCATGCCTGACAATGACCTCTCCAACCTGCCAACCACCATTGCCAGCCTTGTGAATCTGAAAGAGTTAGATATTAGTAAAAATGGTATTCAAGAGTTTCCAGACAACATCAAATGCTGTAAATGTCTATCAGTTGTGGAGGCCAGTGTAAATCCTATAGCCAAGCTCCCGGAAGGCTTCACCCAGCTTCTAAACCTGACACAGCTCTTCTTAAATGATGCCTTCCTTGAATACCTGCCTGCCAATTTTGGGAGATTGTCAAAATTACGGATCTTGGAACTTCGTGAGAATCACCTGAAAACTATGCCAAAGTCAATTCATAGGCTGTCGCAACTGGAGCGGTTAGACTTGGGAAGCAATGAATTCTCTGAACTGGTAAGAAAGATGCTCTCCTCTGTTAGCGCACTCAGCATGGATTTTGGCTTTAGCAGGGAAtcTATTGGGAAACTGAGGCAGCTGCGGTATCTAGACTTGGCGAAGAACAGGATTGAGAGTCTAGATGCAGATATCTCTGGCTGCGAGTCCTTAGAGGACCTTCTCCTCTCCGCCAACATGCTGCAACAGTTACCTGATTCAATAGGAAAGTTGAAAAAGTTGACAACATTAAAAGTTGATGACAACCAGCTCACCTCACTGCCTAACACCATTGGAAGTTTATCACTTTTAGAGGAGTTTGACTGTAGCTGCAATGAACTGGAATCTCTGCCTCCCACCATTGGCTACTTGCACAGTCTTCGGACATTTGCAGCCGATGAGAACTTCTTGTCTGATCTGCCCAGAGAGATTGGAAACTGCAGGAATGTCACGGTCATGTCCTTGCGCTCCAATAAACTGGAGTTTCTGCCTGATGAAATTGGACAGATGACAAAGCTACGTGTTCTCAATCTAAGTGACAATAGGTTAAAGAATCTTCCCTTCACTTTCACTAAATTGAAAGATCTTGCTGCACTCTGGTTATCTGACAATCAGTCCAAGGCCCTTATCCCCCTTCAAACAGAGGCTCATCCTGAGACCAAACAGAGAGTCTTGACCAACTACATGTTCCCTCAGCAGCCCAGGCATGATGAGGATTACCAGTCTGACACTGACAGCTTTAATCCCACTCTCTGGGAGGAGCAGAGACAACAAAGGATGACGGTGGCGTTTGAGTTCGAGGACAAGAAGGAGGAAGAGGACAACTCAGGAAAAGTGAAGGTTGAGATTAATTTAAAGCGTTATCCCACCCCGTACCCAGAAGACCTCAAGAACATGGTAAAGTCAGTGCAGAACCTGGTGGGTAAAACCACTCACCCCCTAAACACTGAGAAATGCTCTTCTGGGACCAATATGGAGCTCCACAGCCAAGACAAGTATGAGCCCAAGTGGCCCATTGCTCCAAAGGAGGACTCCATGGGAGGCTCCCCAAATGATATCCGAATCTCTGACATGAGACCAACTTTGGTAGAGCCACCAATGTACAAACCAAAAGTTGTGTTACTGGGCAAGGAAAAGAAAGagTCAACAGATGAGTCTGAACCAGACAAAATGCATTGTTTGAACAACAGCGGATCATCTGCCACTTATTCAGACTACTCACCCTCCCAGGGATCATCTGGCTCCTCCAACCCACCTGGAAATGTCGGCAATCTGCAAACATCTGGGAAAGAGGGGTCATCACAGACTCACTGGACCAACAGGCTGGCTCAGTCTTTCCCAAAGCCCATTGAAACCAAGCCTCTTCTAAGCCAGAGGGAAACACCTCCTTCCAGCACGCTGCAGCAGCGAGGTGAGAGGCGGCCACTCAGCGACACCTTCGACAGCTGGAACGATGCCCCCCACTATGATAACACAGGTTTTGTTGCCGAGGAGATGCCTCTTGACACTCCGAGCAGCAGTGCTGGAAACCCCATGCTAGGCTCAAAGCCCCGGAGTGCATCGACAGCACATGGGCGACGGCCTCTCATGAGACAAGACCGCATCGTTGGAGTTCCCCTAGAGCTCGATCAGACACAACAAACTTTCCACACAGTTCGCAACACCCCTGACACTGAAGTGCCTGCTCCTTCAAACCCCTGGCAAAACTGGACAAGGACTCCCAGTCCTTTTGAGGACAGGACAGCTTTCCCTTCCAAGTTGGAAATTACCCCAGCCAACAGCCCTAATCCTGACCGTAAGGACTTTGAGCAGGAGATGGGAGAAATACCCGGCACTTTCCCCTCAACTGGAGCCTGGGGGTTTCTGGACTCTACAGACTCAGGGACGGGACGAGGTCATCCCAACGTTTATACGCACATCCAGGTTGGGAAAGAACCAAATAAGGGAAACACTATGGTTCTTAGCAAAAGTTCTGAAAGACTTTCACCAATGATGAAGGAGGTAAAAGCAAAATTTAAGAAATCCCAGAGCATAGATGAAATCGATACCGGGTCATACAAGGTCTATAGCATCCCTATGGACAGCTACAGTTCTAGCATAGAAAATCAGGGAAGTGTTGATCGAGCAGACTTTCCTATACCTCTAGAACAGAGCATGTCCAGGAGCCAGTCAGCTCCAATGCTGGATGATGATCTGGATGGCTACGGTTTGAATAAAAGCTCTCAGCAGCAGAAGCCCGCCATCCCAAAGAAAGTTTACCATTTTGACCAAAGCTTCAACCCACAAGGAGCCATGGATGTTTTGAAAGCAGAGAGGAGGGTTCCTCCACCATTCCCCAACACCCCTGAATATGTGAACCAGCCTGGGAAGACTTTGCCAAAGGAACTAGTCAGTCCAAGGGGCTATCGAGGTTATCCGCAGATGGAACAAGTCTTTTCATTTGCTCCGAATGCCACTGATGATTCTCACAATCAACAACTCTCTGTCCAGCCCCAACGCTCCAGGCCGGGTTTCCTGAGGCGAGCGGACTCTTTAGTAAGTTCGACGGAGATGGCGCTGTTCCGCAGAGTGGCTGAGAACCATGAACTCCAGCTGGCAGAGCACTACAGCAGACCTCAACAAATAAAGAGCATGCTGGAGCAACAGAACAGCTTGTCTACCATGGCTGACACTCAGTTCCACAAGAGGAATGGTAGGTATGATGAAGATTACTCATCTTATCAAGAACCCAAAAAGCCCATCATGGGTTATCCCACCAAGAGTCTGACACAACGTCGCCCCCTGTCTGCACGGAGCTACAGCACAGAGACATACGGGGCATCTCAGGCAAGGCCAGTGTCTGCCCGGCCCACAATGGCTGCTCTTCTAGAGAAATTGCCTTCAGATTACAATCTTAGTACATGCACTGAGAAAAGCCCTGAAGCCGACATGAACCTGAGACCTGTCCCTCAGAAACAAGAGGACCTGACCTCCAAAATGCCAGTAGACTGGAGACAGCAGCTGCTTAGACACATAGAAGCGAAGAGACTAGACCGGAGCGCTGTCCTTAAGCACAACACAGTAAACTTCGGCATGCTGTACTCTGGAGGCTATGCTGCACCGCATGCCAGCAGAAGCATGACAATAAACTTTTACAATAACACAAAGCATGAAAACCAAACAACTCAGTGGCTACCTCTACCAAATACACCTTCACAACAGAGCAATATTTTAGATAATGGACAAGAGGTCATGTCCCCGAGTAGCCAGTGGGCGCCGTATTCACTGGGACGAAGAGATGTGCCACCAGAGAACATGAATATCATCAAAAAGGTACAGATTAAAACGATGATGATCACTTCAGCCCCCCCACCCCACCGGACGGCCCGCGACCAGCAGTATGAGGGTGCCATCAACAAGGTGTCCATCCAGCAGTACCAGTCCCCGCTGCCCATgcccatcaccaccaccagcccCCGGCCCCAGAGTGCCCGCTGCTTCATTCAGACTAAAGGCCAGAAGAGCATGGATGGCTTTCCAGAACAGCTCTGTGTGAGAATCGAGAAGAACCCTGGCCTTGGTTTCAGCATCTCAGGGGGAATCAGTGGACAAGGGAACCCCTTCAAGCCCTCGGACATGGGTATCTTTGTTACTAGGGTACAGCCTGATGGACCAGCCTCCAACGTTCTTCGACCAGGGGACAAAATTCTGAAGGGCTTTGCATGTGGCATTAAATGTGAAGTGTGTATGCGTGTAccgtatgtgagtgtgtgtctcaAGTAA

Function

symbol description
lrrc7 Predicted to enable signaling receptor binding activity. Predicted to be involved in several processes, including cellular response to tumor necrosis factor; negative regulation of NF-kappaB transcription factor activity; and positive regulation of Ras protein signal transduction. Predicted to be active in basolateral plasma membrane. Orthologous to human LRRC7 (leucine rich repeat containing 7).

GO:

id name namespace
GO:0032088 negative regulation of NF-kappaB transcription factor activity biological_process
GO:0046579 positive regulation of Ras protein signal transduction biological_process
GO:0071356 cellular response to tumor necrosis factor biological_process
GO:0007165 signal transduction biological_process
GO:0016323 basolateral plasma membrane cellular_component
GO:0005102 signaling receptor binding molecular_function

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-130530-876 Predicted to enable signaling receptor binding activity. Predicted to be involved in several processes, including cellular response to tumor necrosis factor; negative regulation of NF-kappaB transcription factor activity; and positive regulation of Ras protein signal transduction. Predicted to be active in basolateral plasma membrane. Orthologous to human LRRC7 (leucine rich repeat containing 7).

Ensembl:

ensembl_id ENSDARG00000079670

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00063950 False 4945 mRNA 0.48 24 30124197 30210378
TCONS_00063951 True 4338 mRNA 0.49 24 30129983 30210378

Neighbor

gene id symbol gene type direction distance location
XLOC_032916 NA coding downstream 38595 30083946 ~ 30085602 (-)
XLOC_032915 NA coding downstream 263345 29851193 ~ 29860852 (-)
XLOC_032914 NA coding downstream 275350 29846493 ~ 29848847 (-)
XLOC_032913 NA coding downstream 293010 29826454 ~ 29831187 (-)
XLOC_032912 NA coding downstream 334072 29771367 ~ 29790125 (-)
XLOC_032919 FP236850.1 coding upstream 11456 30221834 ~ 30221970 (-)
XLOC_032920 NA coding upstream 241909 30452287 ~ 30459015 (-)
XLOC_032921 zgc:153311 coding upstream 273627 30484005 ~ 30485009 (-)
XLOC_032922 lurap1 coding upstream 415567 30625945 ~ 30658848 (-)
XLOC_032923 ttc4 coding upstream 466617 30676995 ~ 30683637 (-)
XLOC_032927 CR847887.1 non-coding upstream 859152 31069530 ~ 31147255 (-)
XLOC_032933 NA non-coding upstream 1534913 31745291 ~ 31749784 (-)
XLOC_032940 NA non-coding upstream 1985430 32195808 ~ 32196825 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_04086574_04090310 NA coding CI01000340 null 4086230 ~ 4090310 (-)
bowfin (Amia calva) AMCG00004847 NA coding CM030140.1 CM030140.1 5657744 ~ 5707951 (+)