XLOC_032961 (fam183a)


Basic Information

Item Value
gene id XLOC_032961
gene name fam183a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 34138386 ~ 34141935 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064050
GACTCAACCCTCAGCTTTGAGTGACTCTGTGTTCAGACTAACACACATTAGCATCCGAAAAACATTTTAACAGCTTAAATATGGCAAAACTTAAAGAAAAAGAACCATTGGACATAGTTCACCAGAATGCTATTCATGTCGAGACAATAATGAAGGAGTTGAGACACCAGAAGCTTTACACGGAGTTTAACATCAATCCCTTTAAGAAACTGCACGTTTTGACTGACAAACCAATGTCCAGTATCGCCCACAAAAAGGAGGAGGGGGATCCTGCTTTCCTTCAGGCTGTACATAATGCCCACCTGGAGCCAACAAAGAAGTACACTCACCCTCAGACTGAATCACAGGAGATAGGATGGTTATCTAGTCCTCTGCTCGTCACAGATCGCAGTGACAGAAGATTAAACTTTCCACGGCAGAACTCGGAAATCACTAAATACATGGATGCTGCCTGGCGGCTGAAGGAGCAGACACAAAATATGAGATAACAATTTGAGCTTTTTTTTCTTGATGCCATATAACAAAAATTTGGATAAACAAGCCTTGACTGCATATGTGGGCATTCTTTGTCATTACCAATAAATACTAACTGCATAAATACAGCTGTGTTTTAG

Function

symbol description
fam183a Predicted to be active in ciliary base. Orthologous to several human genes including FAM183A (family with sequence similarity 183 member A).

GO:

id name namespace
GO:0097546 ciliary base cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-111103-1 Predicted to be active in ciliary base. Orthologous to several human genes including FAM183A (family with sequence similarity 183 member A).

Ensembl:

ensembl_id ENSDARG00000087144

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064050 True 614 mRNA 0.41 4 34138386 34141935

Neighbor

gene id symbol gene type direction distance location
XLOC_032960 mpl coding downstream 129485 33949280 ~ 34008901 (-)
XLOC_032959 prpf38a coding downstream 206690 33926829 ~ 33931696 (-)
XLOC_032958 akr1a1b coding downstream 212954 33918813 ~ 33925432 (-)
XLOC_032957 nasp coding downstream 221598 33911154 ~ 33916788 (-)
XLOC_032956 tmem69 coding downstream 259721 33875137 ~ 33878665 (-)
XLOC_032962 NA coding upstream 16682 34158617 ~ 34177898 (-)
XLOC_032963 dmrt2b coding upstream 72036 34213971 ~ 34220641 (-)
XLOC_032964 CR385041.1 coding upstream 502318 34644253 ~ 34644370 (-)
XLOC_032965 NA coding upstream 507860 34649795 ~ 34652139 (-)
XLOC_032966 NA coding upstream 675248 34817183 ~ 34818189 (-)
XLOC_032955 CR855206.1 non-coding downstream 412238 33726047 ~ 33726148 (-)
XLOC_032953 CR933860.1 non-coding downstream 694931 33443334 ~ 33443455 (-)
XLOC_032952 NA non-coding downstream 927998 33190582 ~ 33210388 (-)
XLOC_032946 NA non-coding downstream 1451000 32687002 ~ 32687386 (-)
XLOC_032945 LO017955.2 non-coding downstream 1545594 32573996 ~ 32592792 (-)
XLOC_032973 NA non-coding upstream 943097 35085032 ~ 35090195 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_06374920_06376111 FAM183A coding CI01000340 null 6374811 ~ 6377845 (-)