XLOC_003302


Basic Information

Item Value
gene id XLOC_003302
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 12466766 ~ 12467060 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008393
GCCGGGTTCAGTGGCGCGCGCCTGTAATCCAAGCTACTGGGAGGCTGAGGCTGCGGATCGCTTGAGCTCAGGGTTTCTGGACTGCAGTGGACTATGTCGATCGGGTATCCGCACTAAGTTCGGTATCGATATGGTGCTCCTGGGTGAGCTTGGGACCGCCAGGTCGTTTAAGGAGGAGTGAACCGGCCCAGGTTGGAAACGGAGCAGGTCAAAGCTCCCGTGCCGATCAGTAGTGGGATCGTGCCTGTGAATAGACACTTCAGTTCAACCTGAgcgacacagagagacgcagact

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044451 obsolete nucleoplasm part cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:1902494 catalytic complex cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008393 True 295 lncRNA 0.58 1 12466766 12467060

Neighbor

gene id symbol gene type direction distance location
XLOC_003284 si:ch211-156l18.7 coding upstream 282223 12175162 ~ 12184543 (+)
XLOC_003282 NA coding upstream 299976 12166486 ~ 12166790 (+)
XLOC_003280 si:ch211-156l18.8 coding upstream 374588 12052791 ~ 12092178 (+)
XLOC_003279 zgc:64002 coding upstream 486912 11974708 ~ 11979854 (+)
XLOC_003278 NA coding upstream 563256 11891240 ~ 11903510 (+)
XLOC_003304 NA coding downstream 26812 12493872 ~ 12494177 (+)
XLOC_003307 NA coding downstream 55710 12522770 ~ 12523029 (+)
XLOC_003319 NA coding downstream 251049 12718109 ~ 12718402 (+)
XLOC_003320 ap1s2 coding downstream 252884 12719944 ~ 12728353 (+)
XLOC_003321 rbb4l coding downstream 277515 12744575 ~ 12770546 (+)
XLOC_003301 BX000700.13 misc upstream 25814 12440656 ~ 12440952 (+)
XLOC_003300 BX000700.15 misc upstream 34501 12431978 ~ 12432265 (+)
XLOC_003299 BX000700.2 misc upstream 60751 12405730 ~ 12406015 (+)
XLOC_003298 BX000700.3 misc upstream 77919 12388547 ~ 12388847 (+)
XLOC_003297 BX000700.9 misc upstream 92804 12373666 ~ 12373962 (+)
XLOC_003303 BX000700.1 misc downstream 8382 12475442 ~ 12475702 (+)
XLOC_003305 BX000700.11 misc downstream 35491 12502551 ~ 12502847 (+)
XLOC_003306 BX000700.25 misc downstream 49873 12516933 ~ 12517229 (+)
XLOC_003308 BX000700.26 misc downstream 69224 12536284 ~ 12536580 (+)
XLOC_003309 BX000700.4 misc downstream 74979 12542039 ~ 12542334 (+)
XLOC_003276 NA non-coding upstream 590636 11839827 ~ 11876130 (+)
XLOC_003275 NA non-coding upstream 595619 11833344 ~ 11871147 (+)
XLOC_003274 NA non-coding upstream 612320 11820364 ~ 11854446 (+)
XLOC_003322 NA non-coding downstream 315155 12782215 ~ 12785059 (+)
XLOC_003329 CR847923.1 non-coding downstream 684859 13151919 ~ 13152385 (+)

Expression


Co-expression Network