XLOC_003304


Basic Information

Item Value
gene id XLOC_003304
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 12493872 ~ 12494177 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006480
GCCGGGGAGAGCACATCGTCGTCCGACCAATGTTTACTGGGAAGCTACTGGGAGGCTGAGGCTGCGGatcgcttgagctcagggcttctggACTGCAGTGGACTATGTCGATCGGGTATCCGCACTAAGTTCGGTATCGATATGGTGCTCCCGGGTGAGCTCGGGACCGCCAGGTCGTTTAAGGAGGAGTGAACCGGCCCAGGTCGGAAACGGAGCAGTTCAAAGCTCCCGTGCCGATCAGTAGTGGGATCGTGCCTGTGAATAGACACTGCAGTTCAGCCTGAGCGACACAGAGAGATGCTTACt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006480 True 306 lncRNA 0.58 1 12493872 12494177

Neighbor

gene id symbol gene type direction distance location
XLOC_003302 NA coding upstream 26812 12466766 ~ 12467060 (+)
XLOC_003284 si:ch211-156l18.7 coding upstream 309329 12175162 ~ 12184543 (+)
XLOC_003282 NA coding upstream 327082 12166486 ~ 12166790 (+)
XLOC_003280 si:ch211-156l18.8 coding upstream 401694 12052791 ~ 12092178 (+)
XLOC_003279 zgc:64002 coding upstream 514018 11974708 ~ 11979854 (+)
XLOC_003307 NA coding downstream 28593 12522770 ~ 12523029 (+)
XLOC_003319 NA coding downstream 223932 12718109 ~ 12718402 (+)
XLOC_003320 ap1s2 coding downstream 225767 12719944 ~ 12728353 (+)
XLOC_003321 rbb4l coding downstream 250398 12744575 ~ 12770546 (+)
XLOC_003322 NA coding downstream 288038 12782215 ~ 12785059 (+)
XLOC_003303 BX000700.1 misc upstream 18170 12475442 ~ 12475702 (+)
XLOC_003301 BX000700.13 misc upstream 52920 12440656 ~ 12440952 (+)
XLOC_003300 BX000700.15 misc upstream 61607 12431978 ~ 12432265 (+)
XLOC_003299 BX000700.2 misc upstream 87857 12405730 ~ 12406015 (+)
XLOC_003298 BX000700.3 misc upstream 105025 12388547 ~ 12388847 (+)
XLOC_003305 BX000700.11 misc downstream 8374 12502551 ~ 12502847 (+)
XLOC_003306 BX000700.25 misc downstream 22756 12516933 ~ 12517229 (+)
XLOC_003308 BX000700.26 misc downstream 42107 12536284 ~ 12536580 (+)
XLOC_003309 BX000700.4 misc downstream 47862 12542039 ~ 12542334 (+)
XLOC_003310 CABZ01022569.4 misc downstream 73810 12567987 ~ 12568283 (+)
XLOC_003278 NA non-coding upstream 590362 11891240 ~ 11903510 (+)
XLOC_003276 NA non-coding upstream 617742 11839827 ~ 11876130 (+)
XLOC_003275 NA non-coding upstream 622725 11833344 ~ 11871147 (+)
XLOC_003329 CR847923.1 non-coding downstream 657742 13151919 ~ 13152385 (+)
XLOC_003332 NA non-coding downstream 699546 13193723 ~ 13194597 (+)

Expression


Co-expression Network