XLOC_033084 (synpr)


Basic Information

Item Value
gene id XLOC_033084
gene name synpr
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 41223204 ~ 41229787 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064296
ACTCAGTATCTCTGGGTTTGGCTGGCAGAGGAGCTCAACACTccttcacagacacacacacaggctgatGCTCCATCCGTTTCATCAATGTGCATGGTCATATTTGCTCCGCTTTTTGCTGTTTTAGCATTTGCAACATGTGGCGGATATTCTGGCCAGATAATGGTTAAAGTAGAATGTTTGGACAAAACCCAAAACAACATCAGCATTAGTTTCAACTACCCCTTCAGATTGCAACAGGTTCACTTCACTGCTCCTCTGTGTGAAAAAACCAGGAAAGAGACTCTTTTTCTGGAAGGCGATTATGCTTCGTCCGCGCAGTTCTTTGTCTCTGTGTCAGTCCTGGCTTTTCTCTATTCCCTTTTGGCCACTATTGTTTACTTCTTCTACCAGAACAAATACAGAGAGAAGAACAGAGGTCCAGTAGTTGATTTCTTGGTGACTTTAGCTTTCTCTAGCATGTGGCTAGTGAGCTCAATTGCCTGGGCTAAAACTCTGTCTGGGGTAAAAACGGCCACTGATGTGCACCAAATCATGCTGTTAATGTCTGCATGCAGAGCCCAGGAGAACACATGTGAGGTCCTGCAGGAACCCATCTGGACCAatctcaacatgtctgctGCCTTTGGTTTTTTGAACTTCTTACTTTGGGCTGGTAATATCTGGTTTGCCTATAAAGAGACGGGTCTGCATAAGTCTTTCCAGCGGTATCCCTCCAGAACGCCCTCTGAGAAGCGCGGTAGCTTCAGGCAGTTCAGTCAGACCAGCTTTGATCAGTCCGGAGCCGGTTTTGGTCAGAGGCTCTACAACCAGGGAAGTTTTGACTTGTCCAGCGGAGGCTTCAGTCTCCCACAAACCAGTCTGGGACAGCCGATGCTGTACCGACAGATGGGGAGTCCCACATCCAGAGGCCCTCTCATATTTGTTAATGAGATGTGAGACAGAAATACTCAGTAGTAACACAGGTAATTTGTCattgtgcatttatatttctatCATGTCATATACTGTATTGTGACAAAGATATGTCTTTACCGTAGCTATAATTAAGTCCTGCTGAATTATAAACTGATATATTGTAGTATATAACCTCTTTTTATCTTTAAATCTTTTTATCTTTGCATATAAAGAAATAATTTACCATTTCAGATGTAATATTTTGTGATATTGCTCCAGTATTTGTATGGCGTTTAGCATAGCATACCTATATTCAAACAGtctatattttgtgtttaaatatatcaaaacatatttcaatttttaaatatagacTTTAATTTGAAATGGTGTTTTTGCATTTTCCAAGGAACTTATTGATAAATGTGGTATACTATATGTACTATTATATATGTTACTATTATCTTTGTTTCTGtcactgaataaaaaaagtaaCTGACGTTTAGCCAACAA

Function

symbol description
synpr Predicted to be located in membrane and synaptic vesicle. Predicted to be integral component of membrane. Predicted to be active in synaptic vesicle membrane. Is expressed in epiphysis; female organism; forebrain; and male organism. Orthologous to human SYNPR (synaptoporin).

GO:

id name namespace
GO:0030672 synaptic vesicle membrane cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0017075 syntaxin-1 binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030616-625 Predicted to be located in membrane and synaptic vesicle. Predicted to be integral component of membrane. Predicted to be active in synaptic vesicle membrane. Is expressed in epiphysis; female organism; forebrain; and male organism. Orthologous to human SYNPR (synaptoporin).

Ensembl:

ensembl_id ENSDARG00000044278

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064296 True 1410 mRNA 0.40 5 41223204 41229787

Neighbor

gene id symbol gene type direction distance location
XLOC_033083 slc6a22.1 coding downstream 84349 41118910 ~ 41138855 (-)
XLOC_033082 srsf3a coding downstream 131756 41080003 ~ 41091448 (-)
XLOC_033081 rab44 coding downstream 143995 41057943 ~ 41079209 (-)
XLOC_033080 trub2 coding downstream 194506 41023580 ~ 41028698 (-)
XLOC_033079 hdhd3 coding downstream 201324 41014791 ~ 41021880 (-)
XLOC_033085 NA coding upstream 221883 41451670 ~ 41452888 (-)
XLOC_033086 hemk1 coding upstream 280348 41510135 ~ 41536323 (-)
XLOC_033087 cav3 coding upstream 766279 41996066 ~ 42003780 (-)
XLOC_033088 gpr61l coding upstream 802049 42031836 ~ 42036685 (-)
XLOC_033089 parp3 coding upstream 808571 42038358 ~ 42049350 (-)
XLOC_033077 NA non-coding downstream 254863 40963686 ~ 40968341 (-)
XLOC_033076 CR293534.1 non-coding downstream 276729 40946357 ~ 40946475 (-)
XLOC_033074 NA non-coding downstream 359126 40856139 ~ 40864078 (-)
XLOC_033070 CR450814.1 non-coding downstream 403438 40795898 ~ 40819766 (-)
XLOC_033062 CR450814.2 non-coding downstream 555741 40667347 ~ 40667463 (-)
XLOC_033102 NA non-coding upstream 1827675 43057462 ~ 43072882 (-)
XLOC_033106 BX927362.1 non-coding upstream 2117142 43346929 ~ 43349086 (-)
XLOC_033111 NA non-coding upstream 2749924 43979711 ~ 44002542 (-)
XLOC_033118 NA non-coding upstream 4694155 45923942 ~ 45929175 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_10117381_10122090 SYNPR coding CI01000340 null 10116722 ~ 10122090 (-)
tiger barb (Puntius tetrazona) G46840 synpr,LOC107658112,LOC107673482,LOC107584506,LOC107712113,LOC107567085,LOC108436247 unknown NC_056704.1 CM032073.1 20161440 ~ 20166279 (-)