XLOC_033089 (parp3)


Basic Information

Item Value
gene id XLOC_033089
gene name parp3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 42038358 ~ 42049350 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064300
AGTCTGCAGACAGTGTCGAACAGTGAGAGTGAATCTGCAAACTTTCCCTGTACCGCCAGTATCAGAGGACAAAGATGGCACCCAAGAGAAGGGCAGCATCGAGCACCAAAGCTGGAGGGAAGAAAGTCAAGCAGGAGACGCAGCCTGAAGCTCCACCCAAGGACAAATTCACTTCCGCCAAAGAGGCCCTGAAGGCAACAGGATCGCAGGTGAAGGGCACAAGGAACCCAGACAGCGTATGTCATCTGTCAAATGCTGAGGTTCACGAGGATTACGACTGTATGCTTAACCAAACCAACAtaggaaacaacaacaacaaattctaTGTAATCCAGGTCTTAGTGTCTGGAGGGAAGTACTACTGCTGGACAAGATGGGGAAGAGTGGGAGAGTCGGGCCAAAACGCTTTAGCTGGTCCATCTGCCGCTGATGCAGCCATTAAGAGTTTTGAGAAGAAATTCAAAGAGAAGACCAAGAATAATTGGAGCGACCGAGAAAACTTTGTCTCACATTCTGGGAAATACACATTGATAGAAGTGGACGGGGACCAAGATGCAGAAGTGAAGGTGGACTCTGTGGATGGTGGAGCTGTGAAGGTGAAAAGAGAACAAAATGTTTTGCCTTGTACATTGGATGCTGAAACTCAAAGACTCATGCGATTCATCTTCGACAATGACATGTTCAAAGAAGCCATGACCAGCATGGACCTAGATATTAAGAAGATGCCCTTGGGGAAACTCAGCAAGCAGCAGATAGCCAAAGGCTTTGAGGCTTTGGAGGAAATTGAAGCTGCAATAAAGAAAAGTGAACGGAGCAAGTTTGAAGAACTCACCAACAAATTCTTTACCATAATTCCTCATAACTTTGGCCGCAACAGACCCCCTGTCATTTCTGATGATTCTGTTCTTCAGAGCAAGAAGGAGATGCTTTTGGTTCTTGCAGATATTGAGGTTGCCCAGAGTCTTAAAGCTGAATCTGAGAAAGCCAAGGAAGAGATGGAGGACACTGTGCCTCATCCAGTTGACCAAAATTACCAGTCTCTGAAATGCAGTCTGAATCTGGTGGATAAGAAGTCAAAGGAATATAAGATCATTGAGAAGTACTTGAAGGCCACTGGACAAGAAGGACTCACTCTCGTGGATGTATGGGAAGTTGACAGAGAAACAGAGgctgaACGCTTCAGGGAAAATGATGCATTGGAGAACCGGAAGCTGCTTTGGCATGGAACAAATGTGGCAGTGGTTGCAGCCATTCTGAAGAGTGGTCTTCGCATCATGCCTCATTCTGGTGGACGTGTGGGCAGGGGAATCTATTTTGCCTCTGAAAACAGTAAATCTGCTGGCTATGTGCGTCCATCAAACAAAATTGGCATCATGTTTCTAAATGAAGTTGCTTTGGGAAAGGAGTACACCATCACACGGGACGATCCCAGCTTAAGAAAGGCACCCGCTGGCTATGACAGTGTAATTGCACGTGGAAACCAAGAAccagATCCTTCAAAAGATGTCTTCATTGAACTTGATGGTAAAAAGGTGGTGGTTCCTCAGGGAAAAGCCATAAAACAGCAGCAATACGAGGGAAGTCATTTCTACAACAGTGAGTACCTCATCTATAAGGAAAGCCAGTGCCGCATCCGATACCTCTTGGAGTTGAAGTTTAATTATTACTAGAGATGCAAATCAAGAAACTGTATCTACATACAGCACAGCCACttataaaagccacttctgatatgtGGTTTCGCTCGTATAAAGTGCTGAATGTTTGAGGTAATTACTGAGTTGGAAATTCATTGAAGTTCTGTTTTTGAAAGCTACAGTACACAACAACGTTTTTATGTACTGTAAACCTTAGTGTGATCTTACAATATGTTTGCTCATTTTGTCATATCCCTGAGTGAAGTTTAAATgtcttttatcatttattttctgcAATATCTTATTCAAGTTCAAAACAGATTTACTGGTTTCAGTAGTGTCAGAACAACAAGTTATTACATGTGTTTAAACATCTTTAAGCATTTATAAAAACTTGAGTCAGGgagcatatatgtatatatacatatatctatagtAATTTAGGGGGAAATGAAGAcagataaaatattgtaattgttttttgtttttaaagtttaattttgcaCTAATCAATACAGTAATGTGCATGTGACTTGCTGACTCATTGCTGAAAAGCATAGCTTGTGAAGGTAATGTGATGCTCTGGACCCTTATATATTTGCTTGATGTTAAAGGAAAGGTCTTATACATGCACAAATGCAACATACTGTATTGTTTGTTTATAGTTATCTTTTCTTATATACTTATACTTAAAGTTACTTATCTTCatagttatcttttttttttacatcttatgGTGAGTTTTGAAGTTCCAACATAAATGTTAATGTGAGGACTTGGCACTTAAACAATCTGAAGATAATAAATCATTATACTTAT

Function

symbol description
parp3 Predicted to enable NAD+ ADP-ribosyltransferase activity and protein ADP-ribosylase activity. Acts upstream of or within ectodermal placode development and regulation of neural crest formation. Predicted to be located in nucleus. Predicted to be active in nucleolus and site of double-strand break. Is expressed in axis and notochord. Orthologous to human PARP3 (poly(ADP-ribose) polymerase family member 3).

GO:

id name namespace
GO:0006302 double-strand break repair biological_process
GO:0090299 regulation of neural crest formation biological_process
GO:0006471 protein ADP-ribosylation biological_process
GO:0071696 ectodermal placode development biological_process
GO:0070212 protein poly-ADP-ribosylation biological_process
GO:0035861 site of double-strand break cellular_component
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component
GO:0016740 transferase activity molecular_function
GO:1990404 protein ADP-ribosylase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0003950 NAD+ ADP-ribosyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-7435 Predicted to enable NAD+ ADP-ribosyltransferase activity and protein ADP-ribosylase activity. Acts upstream of or within ectodermal placode development and regulation of neural crest formation. Predicted to be located in nucleus. Predicted to be active in nucleolus and site of double-strand break. Is expressed in axis and notochord. Orthologous to human PARP3 (poly(ADP-ribose) polymerase family member 3).

Ensembl:

ensembl_id ENSDARG00000003961

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064300 True 2456 mRNA 0.41 11 42038358 42049350

Neighbor

gene id symbol gene type direction distance location
XLOC_033088 gpr61l coding downstream 1673 42031836 ~ 42036685 (-)
XLOC_033087 cav3 coding downstream 34578 41996066 ~ 42003780 (-)
XLOC_033086 hemk1 coding downstream 502035 41510135 ~ 41536323 (-)
XLOC_033085 NA coding downstream 585470 41451670 ~ 41452888 (-)
XLOC_033084 synpr coding downstream 808571 41223204 ~ 41229787 (-)
XLOC_033090 grm2a coding upstream 2130 42051480 ~ 42112191 (-)
XLOC_033091 tex264a coding upstream 96276 42145626 ~ 42290259 (-)
XLOC_033092 fancd2 coding upstream 241958 42291308 ~ 42336995 (-)
XLOC_033093 usp4 coding upstream 295655 42345005 ~ 42369186 (-)
XLOC_033094 emc3 coding upstream 320649 42369999 ~ 42377307 (-)
XLOC_033077 NA non-coding downstream 1070017 40963686 ~ 40968341 (-)
XLOC_033076 CR293534.1 non-coding downstream 1091883 40946357 ~ 40946475 (-)
XLOC_033074 NA non-coding downstream 1174280 40856139 ~ 40864078 (-)
XLOC_033070 CR450814.1 non-coding downstream 1218592 40795898 ~ 40819766 (-)
XLOC_033102 NA non-coding upstream 1008112 43057462 ~ 43072882 (-)
XLOC_033106 BX927362.1 non-coding upstream 1297579 43346929 ~ 43349086 (-)
XLOC_033111 NA non-coding upstream 1930361 43979711 ~ 44002542 (-)
XLOC_033118 NA non-coding upstream 3874592 45923942 ~ 45929175 (-)
XLOC_033121 BX005101.1 non-coding upstream 4118667 46168017 ~ 46251940 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_10497000_10501726 PARP3 coding CI01000340 null 10496636 ~ 10502577 (-)