XLOC_033091 (tex264a)


Basic Information

Item Value
gene id XLOC_033091
gene name tex264a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 42145626 ~ 42290259 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064303
TTGGCTCGTTCACGCAATCCCTCTGAGTCACAGTCACATGTTGCAACCAGGAAGCAATGCGCTCAATGTTTTGTGCAAAGGATAAACAAAAATTCAGCTGTGTCAATACATAACTAAACTTACCTAACAGTAAAGCCTCAACACTGTAAATGTAACATCTGCCGAGCGACACGCGAGCAAACAAGCCAATTCGCATGCTGAAGGActgattttgtgtttgttttccctGTAGCTGAGGATTATTTATACACGTTGACCGTTTCTGAGCGTGATTTTGTGAAGCCGGGCAAACAAAAATGTCGGACTTTATCATTTTACTGCTAATTCTGTTTTTGATCATCTGTCTGATCGTGACTCTGGTGGGCTTCGTTTTTTACACCGGTCTTTTCTCGGAAGTCGTGATTCGGACTGGATCTCCTCCGGTGAAAAACATCACGATTGCATACAAGTTCTGGAAGAGCTCGTACAAGGCCAGCGGAGCCGCTTTCACGGAGAGCTGCAGCATCGGACCGAAGCTCTCGTCTGTCGGGGTGTTTTACGATGACCCCAATCAGACTCCAGCAGATCAGTGTCGGTATGTTGTAGGCAGTATACTGTGTGAAAATGAAGAGAAACCCGACGAAGAACTCCAGCGTCTATATGAGAAGTTTGGCTACAAGGTGGTGTCCTTCCCAGAGGTCACATGTGCCGTAACGTCCACGTTTCCAAACAGATGCACTCTGTCCCCTGTCTGCGGTGCTTACAGAGTCTATCCTGAACTACAACAGTATATAAAGGAGAGGAGTCTAAATGCGTGCCCATTCCTGGAGATATGCAGAGGAGGTCTGATCCATTACATGTGTCCTCTGGAGAAGCAGGAGGAATTCTGTGTGCCTGAACTTCTGGAGAAGAAAGCATCTGATGACACAGAGGAAACAGTGGAGTGTGAAGAAGCTGATGTCACAGAGATGGTGTCAgGCGAGCCAGAGCAGAAGTCCACCTCAGAGACCCCGGAAGTAGTTGAAGAGAGCCGAGATGCTGTGGAGGCCTCGGCCCCGCTGCTGGAGAGCCCTCAGTCAGCTCTGCCTGAAGAAGAGGCTCGCAGTGAGGATGGAGAACAGGTGGAGAAAGCATCCAGTGATTCTGTAGGCAGCGGCTCCTCCTTTGAAGAACTAGACCTGGAAGTTGAAGAGGAGAAGCAAAGCGAAGCAGACGAAGAAGACCATAATGGACAGCAGAAGCCTGTGGTGATGGGAGAAACAATGGGCAACAGGGAAGAGTGAGGGATGAAGTGGATTAGAGAGAATGTGGATGAAtgatgagtgcatgtgtgagaaagagagagaaaggttGTCTTTGAAATCGTCAAAGGCTCCCCCCCTTCATTAATCTTTGGAATTAACATCTCTAAATATCCTAAAAGTTACTTCTTTGTTATCAGCAAACAAGCAATTATCCCCTTTAGAAGCTTCTATTAAAGACTTAATGAAATGCACATTATATTTTTCGGCTTTGTATTTATTTCCGAGGAAACAAATTGTTTATGTTGCTTTAGCGTTTGTTTTTCCACGGTGATCTGCATTCAGGCGAGTAAATCAGGTGCAGATTGAAGACGAGGATACACTGTTAATGCAACTAAATGAAGCTTAATCAGAGATTTGATTTCATTAACATGTCCTACAGATGATGTGTTCACTAGTGTTTGCTTTAAAACATGATTAGCTCATTCCAAATGCTGTCTTTCGCTGTAGACTAGAAGTGGGAGAAgagtgagattttttttaaaaagtgcatgatGATATTAGTGGTTGGAGTGTGCTTAATATGAGCTGCTTATACTATTTTGtgcatttaattaattagtaTTGTTTTCTACACTTCTGTACTTTGAGTATGGGTCACAAATGAAAggtttcaagcatcaaaacaataaaagtgtaacAGCTTTA

Function

symbol description
tex264a Predicted to be involved in protein-DNA covalent cross-linking repair and reticulophagy. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in several cellular components, including autophagosome membrane; endoplasmic reticulum membrane; and replication fork. Orthologous to human TEX264 (testis expressed 264, ER-phagy receptor).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1885 Predicted to be involved in protein-DNA covalent cross-linking repair and reticulophagy. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in several cellular components, including autophagosome membrane; endoplasmic reticulum membrane; and replication fork. Orthologous to human TEX264 (testis expressed 264, ER-phagy receptor).

Ensembl:

ensembl_id ENSDARG00000092154

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064303 True 1928 mRNA 0.44 4 42145626 42290259

Neighbor

gene id symbol gene type direction distance location
XLOC_033090 grm2a coding downstream 33435 42051480 ~ 42112191 (-)
XLOC_033089 parp3 coding downstream 96276 42038358 ~ 42049350 (-)
XLOC_033088 gpr61l coding downstream 108941 42031836 ~ 42036685 (-)
XLOC_033087 cav3 coding downstream 141846 41996066 ~ 42003780 (-)
XLOC_033086 hemk1 coding downstream 609303 41510135 ~ 41536323 (-)
XLOC_033092 fancd2 coding upstream 1049 42291308 ~ 42336995 (-)
XLOC_033093 usp4 coding upstream 54746 42345005 ~ 42369186 (-)
XLOC_033094 emc3 coding upstream 79740 42369999 ~ 42377307 (-)
XLOC_033095 sec61a1l coding upstream 87652 42377911 ~ 42388608 (-)
XLOC_033096 ip6k2a coding upstream 118823 42409082 ~ 42418225 (-)
XLOC_033085 NA non-coding downstream 692738 41451670 ~ 41452888 (-)
XLOC_033077 NA non-coding downstream 1177285 40963686 ~ 40968341 (-)
XLOC_033076 CR293534.1 non-coding downstream 1199151 40946357 ~ 40946475 (-)
XLOC_033074 NA non-coding downstream 1281548 40856139 ~ 40864078 (-)
XLOC_033070 CR450814.1 non-coding downstream 1325860 40795898 ~ 40819766 (-)
XLOC_033102 NA non-coding upstream 767203 43057462 ~ 43072882 (-)
XLOC_033106 BX927362.1 non-coding upstream 1056670 43346929 ~ 43349086 (-)
XLOC_033111 NA non-coding upstream 1689452 43979711 ~ 44002542 (-)
XLOC_033118 NA non-coding upstream 3633683 45923942 ~ 45929175 (-)
XLOC_033121 BX005101.1 non-coding upstream 3877758 46168017 ~ 46251940 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_10557213_10612562 NA coding CI01000340 null 10557213 ~ 10612562 (-)